Carg19288 (gene) Silver-seed gourd

Overview
NameCarg19288
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDEAD-box ATP-dependent RNA helicase 1
LocationCucurbita_argyrosperma_scaffold_137 : 167366 .. 170480 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGAAGCAGAAGCGCAAGAGCATCCCTGTTCTACCATGGATGCGAAGCCCTGTCGACGTCTCTTTATTCGAGGAATGCCTCTTTGAGATCCTCCCCTTGCTCGACCCCCCCGCCAATTTCCTATTTATTCTGAATCATTTGAATGGTTAATGCCTTCCTATCATCGAGCTTTTCTTTTGTTTATGCATCAAATCGATTTCTGTATCTTTCTATTTGATATTTGTCATTTATTGCACTCCGTTGGAAACAAATGAATCCATGGTGGATATCTCATTGAAGATTTAACAAGCTGCAAAATGTGTTCATATTTAGAAGAGCATTGAGCTGTGATATATCTGTTAATTGTATCACATGTAATTGAAATTTTGGTTATGCACCATATGGCTCGAGATTTGCTGAATTGCATGAAATATGCTCACGGCTATTTTCAATCCGGTTAAAGAAGAGGTTCTTACTGCGGTTGCGCCTGCTGTGGGCTTATCTGTAGGTCTGCCTGTTGGTCAATCCTCCATAGCAGATGAAATTCTGAGCTCATCAAGGGACCTAAGCTCAAGGCCGGCATCTGTTATGATCCCGAATATTTTTTGGTGAGCTACCGAGCGTGGACATATTGGTGGCAACACCTGGAAGATTGATGGACAATATTAACTTCACAAAGGAATTGCAAGTTCTACTTCTTGTAGCTATGGCTATACTGTTGAAGTTTTGTTCACCATTGTTATAATTAATCCTCATAACTTTTTTTACTGGCATGTTCTTTTTGGTTTACCTCAAAATTATAGTGCTGACTGCATATACTGTTTGGATTCATGCAGTGGTGTTGATGGGGGGTTTTAAGGGTCAACCTTACCGAAGGCTTGCAAAGATGGTTCTCTCTGCAATGCCTAACAGGCTCCAGGCAAGCTTGCTCAGCTTGATTTGCATCACGCTCTATTCTTAACCACTGGGAAAAGAAGATATAAACTTCCGGAGTAATTAGAATCATACATGATGGTAAATTGGCCTGTCTCTTAATTAGTGTGCGATCAAATCATATCTTAGGTGTAGAAACCTCTCCCTACTCAAGTGTAGAAACCTCTCCCTAGTAGACACATTTTAAAAACTTGAGGGAAAGTCCGGAAGAGAAAACTCAAAAAAGACAATATCTGCTAGTGATAGATTTGGGCGGTTACAGTTTGTTTATGGTTAAAAGAAGTTAGAGATGAATAATTGAGCAATATGTCGTTGTCCAACTTGCTTACTCTTAGATTCTTATGTTTCAGGTTAGGCGTTTCAAGAGATTGCTACACGGATTGATAATGATTCTTGCCCAATACATTCCCTACCTTCCAGTTCAATTAAGTTGCTCCAGCCTACTTATGTCTCTGGTAACACCTCGTTCCTTTTGACTGTACGGAAAAACTGCCCTAACTAGCCTAAATAATTTAAATTTTTGGGCTTCATACATACATACATACATACATACATACATACATATATATATATATATATTTAAATAGAGGGATTAGGTTAAACTTTAAAAACCAGTTGTGGTAAATTCCTTTGATCCGTGCATCAAATCGGCTCTGCTCTTTCCTCATTATCCAAAAGTAAAGAAGGTTGCTGGGTTAATTTGTTGGGAAGGATTGTTGTTTCCAGCGAAGCTGTTACATAAATAAATAAATAATCCTCTATTATTTTTGTTCATATAGATGTTCTCCATACATTTTTCTTATTTTGATTTGTAATGATTAACAGTCCTAGAGAAACTGAAGGAAAAGGTTGAATCAGAAAGAAAGCACATTCATGTCTTCCAGAGTGCGCAAACGAAAAGATATGAACTCCTCCAAAGAAAAAGGTTGGTACTAACAAACAAGTCCCTCTGAGAGTTTAATGTCCCATTTCATAACATATGAAAAACTCGTTTAGGCCGTGTAGGGAAAGATTAATTGGCAGGCATGATTTGAATGTTTAATCTTGCATGTTCTGTTGACTAATCTGCGTTGAAACTGTTGGACTGAATGACAGTATTCTTATGCATTTTAACATTACAAATTCCTCATTTCAAACTCGACAAACTATACATAAGATTGCATTAGTCTTTTAGCAAGTTCACTGGATACTGTGCGAGCACAAATTTCAGGAACTCATCCCACAACGACATGAAAATTCAACTACAGGATATGGTGATGAAGCCTCAAAGGCCCAATTTTCACTCCAGACAACAAATTATTCAATCATTGAGTTTGGAGAAAGATCTATTTATGTTTCTGACGAAGTACATAGAATTGGCACTAACAACCATAGGCGCAGGGGTTGTTGATGATGGTAGGCTTCTTGGAGAAGCAGGATACTCATTCTTGCTGCCATCTCTCTCCTCTTCACTGATGGTATCCAACACTTTTGACGTTCGGCGTCTCATGACACTGATAATCTGTGGTGGCGCGACCTCGGTAACGAACCTTGCTATACGGGAATTTGCCATTACTTTTGAAGGATGATGGTTGAGAAAACTAATGCTCTAGGAGGTCAGATTGGTTGGGTTGAGCGTGAATGCAAGCCTTTGGGTGATATTTATGAGAATCTGCGTAGACTAAGAATTGAATGAAAGTCCTGTGCCGAGGGGGGATACTTGAAATCAATATTTTTGGCTATGTTGGTGCTGCTTAGTACACATCTTCTATTGATATTTATTGCAGTTTTCAAATGTCTGATCTCTTTCCCCGACCTTTCTAGGAGATTAACATGTGGTGTTTAGAGGTATATCCCAAAATCTGCTGGGACCAATAGCTTTTGCATTTGCCCTCTTCAAAATTTAACCATGATTGGCAAATCCATATGCCACGTTTCTTAATTTTCTGGTATGTTAATGTTGACAAAATTTTCTATTGGTTTCTAACATTTGTGTTAATTTTTCTGACAAGTGTCACAGGTTTCAAGGAACAGAATTGCTGTCCTAATTGAACAACAAAATTTATGGAGGTTTGGAGGATCCCAATGGAATATAAAATATCTGTATTGAATTATTGGTTCGCCTTTAATTTTGATTTTTTTTTTTTCCAGAAAAGGAAAACTTGCAGCTTATGATTATCGATCAGTTTTAACCGATTGTGTTAAACTAATAAAATAA

mRNA sequence

ATGGCGGAGAAGCAGAAGCGCAAGAGCATCCCTGTTCTACCATGGATGCGAAGCCCTGTCGACGTCTCTTTATTCGAGGAATGCCTCTTTGAGATCCTCCCCTTGCTCGACCCCCCCGCCAATTTCCTATTTATTCTGAATCATTTGAATGTCCTAGAGAAACTGAAGGAAAAGGTTGAATCAGAAAGAAAGCACATTCATGTCTTCCAGAGTGCGCAAACGAAAAGATATGAACTCCTCCAAAGAAAAAGAAAAGGAAAACTTGCAGCTTATGATTATCGATCAGTTTTAACCGATTGTGTTAAACTAATAAAATAA

Coding sequence (CDS)

ATGGCGGAGAAGCAGAAGCGCAAGAGCATCCCTGTTCTACCATGGATGCGAAGCCCTGTCGACGTCTCTTTATTCGAGGAATGCCTCTTTGAGATCCTCCCCTTGCTCGACCCCCCCGCCAATTTCCTATTTATTCTGAATCATTTGAATGTCCTAGAGAAACTGAAGGAAAAGGTTGAATCAGAAAGAAAGCACATTCATGTCTTCCAGAGTGCGCAAACGAAAAGATATGAACTCCTCCAAAGAAAAAGAAAAGGAAAACTTGCAGCTTATGATTATCGATCAGTTTTAACCGATTGTGTTAAACTAATAAAATAA

Protein sequence

MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDPPANFLFILNHLNVLEKLKEKVESERKHIHVFQSAQTKRYELLQRKRKGKLAAYDYRSVLTDCVKLIK
Homology
[Close]
BLAST of Carg19288 vs. NCBI nr
Match: XP_022146668.1 (DEAD-box ATP-dependent RNA helicase 1 isoform X2 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 1  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP 39
          M EKQKRKSIPVLPWMRSPVDVSLFEEC  EILPLLDP
Sbjct: 1  MGEKQKRKSIPVLPWMRSPVDVSLFEECPLEILPLLDP 38

[Close]
BLAST of Carg19288 vs. NCBI nr
Match: XP_022146667.1 (DEAD-box ATP-dependent RNA helicase 1 isoform X1 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 1  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP 39
          M EKQKRKSIPVLPWMRSPVDVSLFEEC  EILPLLDP
Sbjct: 1  MGEKQKRKSIPVLPWMRSPVDVSLFEECPLEILPLLDP 38

[Close]
BLAST of Carg19288 vs. NCBI nr
Match: XP_022926614.1 (DEAD-box ATP-dependent RNA helicase 1 [Cucurbita moschata] >XP_022926615.1 DEAD-box ATP-dependent RNA helicase 1 [Cucurbita moschata])

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 1  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP 39
          M EKQKRKSIPVLPWMRSPVDVSLFEEC  EILP LDP
Sbjct: 1  MVEKQKRKSIPVLPWMRSPVDVSLFEECPLEILPSLDP 38

[Close]
BLAST of Carg19288 vs. NCBI nr
Match: XP_023003461.1 (DEAD-box ATP-dependent RNA helicase 1 [Cucurbita maxima])

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 1  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP 39
          M EKQKRKSIPVLPWMRSPVDVSLFEEC  EILP LDP
Sbjct: 1  MVEKQKRKSIPVLPWMRSPVDVSLFEECPLEILPSLDP 38

[Close]
BLAST of Carg19288 vs. NCBI nr
Match: XP_023517664.1 (DEAD-box ATP-dependent RNA helicase 1 [Cucurbita pepo subsp. pepo] >XP_023517665.1 DEAD-box ATP-dependent RNA helicase 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 1  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP 39
          M EKQKRKSIPVLPWMRSPVDVSLFEEC  EILP LDP
Sbjct: 1  MVEKQKRKSIPVLPWMRSPVDVSLFEECPLEILPSLDP 38

[Close]
BLAST of Carg19288 vs. TrEMBL
Match: tr|A0A1S3AZ50|A0A1S3AZ50_CUCME (DEAD-box ATP-dependent RNA helicase 1 OS=Cucumis melo OX=3656 GN=LOC103484346 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-08
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLD 38
          MAEKQKRK IPVLPWMRSPVDVSL EEC  EILP+LD
Sbjct: 1  MAEKQKRKHIPVLPWMRSPVDVSLIEECPLEILPMLD 37

[Close]
BLAST of Carg19288 vs. TrEMBL
Match: tr|A0A0A0KNZ7|A0A0A0KNZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524090 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-08
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1  MAEKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLD 38
          MA+KQKRK IPVLPWMRSPVDVSL EEC  EILP+LD
Sbjct: 1  MADKQKRKRIPVLPWMRSPVDVSLIEECPLEILPMLD 37

[Close]
BLAST of Carg19288 vs. TrEMBL
Match: tr|A0A1U7YW73|A0A1U7YW73_NELNU (DEAD-box ATP-dependent RNA helicase 1 OS=Nelumbo nucifera OX=4432 GN=LOC104588479 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 3  EKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDP 39
          E  K+KS+PVLPWMRSP+DVSLFEEC   +LP LDP
Sbjct: 2  ENSKQKSVPVLPWMRSPIDVSLFEECPLNLLPCLDP 37

[Close]
BLAST of Carg19288 vs. TrEMBL
Match: tr|A0A2P2KIR3|A0A2P2KIR3_RHIMU (DEAD-box ATP-dependent RNA helicase 1 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 3  EKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDPPAN 42
          +K+K +S+PVLPWMRSPVDVSL EEC  E+LP LDP  N
Sbjct: 9  KKRKSESVPVLPWMRSPVDVSLVEECPLELLPCLDPRLN 47

[Close]
BLAST of Carg19288 vs. TrEMBL
Match: tr|A0A2P2KIR8|A0A2P2KIR8_RHIMU (DEAD-box ATP-dependent RNA helicase 1 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 3  EKQKRKSIPVLPWMRSPVDVSLFEECLFEILPLLDPPAN 42
          +K+K +S+PVLPWMRSPVDVSL EEC  E+LP LDP  N
Sbjct: 9  KKRKSESVPVLPWMRSPVDVSLVEECPLELLPCLDPRLN 47

The following BLAST results are available for this feature:
BLAST of Carg19288 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022146668.13.5e-1092.11DEAD-box ATP-dependent RNA helicase 1 isoform X2 [Momordica charantia][more]
XP_022146667.13.5e-1092.11DEAD-box ATP-dependent RNA helicase 1 isoform X1 [Momordica charantia][more]
XP_022926614.11.8e-0989.47DEAD-box ATP-dependent RNA helicase 1 [Cucurbita moschata] >XP_022926615.1 DEAD-... [more]
XP_023003461.11.8e-0989.47DEAD-box ATP-dependent RNA helicase 1 [Cucurbita maxima][more]
XP_023517664.11.8e-0989.47DEAD-box ATP-dependent RNA helicase 1 [Cucurbita pepo subsp. pepo] >XP_023517665... [more]
BLAST of Carg19288 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg19288 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg19288 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AZ50|A0A1S3AZ50_CUCME1.7e-0886.49DEAD-box ATP-dependent RNA helicase 1 OS=Cucumis melo OX=3656 GN=LOC103484346 PE... [more]
tr|A0A0A0KNZ7|A0A0A0KNZ7_CUCSA3.7e-0883.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524090 PE=4 SV=1[more]
tr|A0A1U7YW73|A0A1U7YW73_NELNU1.6e-0672.22DEAD-box ATP-dependent RNA helicase 1 OS=Nelumbo nucifera OX=4432 GN=LOC10458847... [more]
tr|A0A2P2KIR3|A0A2P2KIR3_RHIMU2.1e-0669.23DEAD-box ATP-dependent RNA helicase 1 isoform X2 OS=Rhizophora mucronata OX=6114... [more]
tr|A0A2P2KIR8|A0A2P2KIR8_RHIMU2.1e-0669.23DEAD-box ATP-dependent RNA helicase 1 isoform X2 OS=Rhizophora mucronata OX=6114... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19288-RACarg19288-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19288Cp4.1LG10g06240Cucurbita pepo (Zucchini)carcpeB0413
Carg19288Bhi03G000101Wax gourdcarwgoB0385
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19288Carg14991Silver-seed gourdcarcarB328
The following block(s) are covering this gene:
GeneOrganismBlock
Carg19288Silver-seed gourdcarcarB327
Carg19288Cucumber (Gy14) v2carcgybB0312
Carg19288Cucumber (Gy14) v1carcgyB0350
Carg19288Cucurbita maxima (Rimu)carcmaB0415
Carg19288Cucurbita maxima (Rimu)carcmaB0411
Carg19288Cucurbita maxima (Rimu)carcmaB0412
Carg19288Cucurbita maxima (Rimu)carcmaB0413
Carg19288Cucurbita moschata (Rifu)carcmoB0406
Carg19288Cucurbita moschata (Rifu)carcmoB0407
Carg19288Cucurbita moschata (Rifu)carcmoB0408
Carg19288Cucurbita moschata (Rifu)carcmoB0410
Carg19288Cucurbita pepo (Zucchini)carcpeB0412
Carg19288Cucurbita pepo (Zucchini)carcpeB0415
Carg19288Cucurbita pepo (Zucchini)carcpeB0416
Carg19288Wild cucumber (PI 183967)carcpiB0332
Carg19288Cucumber (Chinese Long) v2carcuB0326
Carg19288Cucumber (Chinese Long) v3carcucB0332
Carg19288Bottle gourd (USVL1VR-Ls)carlsiB273
Carg19288Bottle gourd (USVL1VR-Ls)carlsiB274
Carg19288Melon (DHL92) v3.5.1carmeB0300
Carg19288Melon (DHL92) v3.5.1carmeB0301
Carg19288Melon (DHL92) v3.6.1carmedB0311
Carg19288Melon (DHL92) v3.6.1carmedB0312
Carg19288Watermelon (Charleston Gray)carwcgB0292
Carg19288Watermelon (Charleston Gray)carwcgB0293
Carg19288Watermelon (97103) v1carwmB0291
Carg19288Watermelon (97103) v1carwmB0292
Carg19288Watermelon (97103) v2carwmbB0307
Carg19288Watermelon (97103) v2carwmbB0309
Carg19288Wax gourdcarwgoB0386