Carg19282 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19282
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transcription factor TCP2-like
Location	Cucurbita_argyrosperma_scaffold_137 : 144821 .. 150434 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTGGTGGATAATATACAAGAACAACCGCGCAAGTTCCCAAGGTTAGCAACTGGCAGAAGTAGCGACTCCAATAAGATAGGATTAAAAGGGATTGAGAACATTCAACCGGAGGATGAAGAAGACAAAGAATCAAAAAGGGTTGGTGGTAGCACCGCGTTAGTGGGCAGTGGAGGTGTAGGAGGAGATGATGATGATGGTAATCGGCTTCGTGGATGGCACCACTCCCGGATTATTAGGGTTTCTCGAGCTTCGGGCGGGAAGGACAGGCATAGCAAGGTGTGGACTTCAAAGGGACTTAGAGATCGAAGGGTTCGATTATCGGTAGCGACGGCGATTCAGTTCTACGATCTTCAAGATCGGTTGGGTTTTGATCAACCAAGCAAGGCTATCGAGTGGCTGATCAAAGCGGCCGCGGATGCAATAGCAGAGTTGCCTTCGCTGAACGCCTCTTTTCCGGAAACTCCAAAACAGCTGAGTGGGGAAAAGATTAGTGTCACTGATGAACCCGGGTCGTTAGACCCAGTCGAGCAGAATCAGAGCCAATTACATGTTTCCTTGTCCAAATCTGCTTGCAGTAGTAACTCCGAAACCAGTAAGGGTTCAGGTTTGTCTCTCTCGCGATCTGAGGTTCGCGTGAACCGCCTCAAAGCTCGCGAAAGGGCGAAGGAGAGAGCACAAAAGGAAAAGGAAAAAGAACAGGACTCTTCTCGCATCGCCGATCATAATCTCACCTCCATGGCCCCAAATTCATCTTTCACCCAGCTACTCTCTGGCGGTGCTGCAACGGTTTCAGCTCATCGGGACGCCGGCGTGGCTGTAGAAAGGCAGTGGCAGTCATCGACCGTTGCTATGGATTACTTCAGCTCGGGAATTCTTGAGTCGTCCACTTCTAGAACTCACCACTCTTCGGGATTTTCCGAACAAATGAATTTGGGAACTCCGTTGCCACAAACCATGTCAAGCACTCCATTATTTAGCAGCGTCTCAGCTAGTGACAATAATGCGGAGCAGCTTCATCATTTCTCATTTGTTCACGATGGCAATATAATTCCCGTGGCCACAACTCAACCGGCGGGTGGCAGCGACTACAACCTCAACTTCACCATTGCTTCCAACCTTCCGGGTTATTATAGGGGGACCCTTCAGTCCAATTCATCACTTTTGCCTCATATCCAGAGGTTTTCTCCTGTTGACGGATCCAATTTACCTTTCCTCTTCGGAGCTGCGACTTCTTCGGCTGCTCCACAAATGGAAAATCATCATCATTACCAGTTTTCGCCTGCATTTGACGGTCGTTTGCAACTCTGCTATGGAGGCGGAAGCCGGCAGTCGGAACAGAAAGGAAAAGAAAAGAAATGAACTCTTTGTACAGCATATTCCTCTCAGCCTATCTTCTTCCTGGTAAGCTTCAAAACTTAACAATACTCTTTTTTTTTTTTTCCTTTTTTCGTACGGTTCTCTTTTCCTTTTCTTTTTCGTTTGGGTTATTGTTAATTGCATTAGCTGCTTGATTTCTTCGTAGACTTCAAAAAAAGTAGAGCATTGGGCCAAGGTTTGGTTATTGTTTCAAAAATAAAAAATAAAAAAATAAACCCAATAATTTTTCGATTGCTGTGAAGTGGGTCCGGTTGGCTGTGGCCTAAGTTGCTTCTCTCCTCTCTTCTCATTAGCAACGAGAAGGGCTAGGCTTTCTATTCGCTGTGCCATGTGTAACTCAGTTTGAGGAAATACCGCACTTGAATAATGGAGCGGATTTCGCTTTCCACTTACAAACGGCCGTTAATTGGCAATGCTGACACCTCGGGCTCAGCTAATGTTAGCGCCTCTTCTCGAATGGTTAGATTAGGTCTTGACTTTGGGAAACAAATGCTCTTTCCTTTTGTCTTCGGATTTGAATTTGAGAATTACGACAACCTGACTTAATACCCTAGAAGCTCCATACACACATGGATTTAGAAATGACTGCTTTCTACAGAGAACAGCAAATGACAAAAACTTACAAACCCTCTATTTTTAATTATTTTACTCCATATTAGTTGAAATCAATTTGTGATCTTGCTTTGACCGTCAGTTATCACAGTTGATGAGATATTTCTTTGTATCATAACTCAAATTTTGAAGACACTGCTATTAGAAAAATAATTATATATAAAAAAAAGAAGTGTTATATTTGGCCAATAAAAATAGAAGTTGCACCTTTTTTGTGATGAACCAAGGAAGTTTGATGCATAACTTGATAGTTGTCGTCTCCTCAACATATATATATTTTTTTTCTAATGTTAGTATATTGAAATGTTCTTTATGTCTGAGTGTGTGGTTCTTTTCACTAATTTTAAATACAATCTAACAGTGTATTTACTTCTTTTAGAGTAAATTATCTAATACTTGGTGTAACAGTTTGGTTGTACTAATAACATTTATTATTTTTTCTTATTTGAGTATTGCAATGTTAATAGGGTAAGAATTTCAACCTCATTGGAGAATGCCATGTTATTGTTATTTGGACTAAACTATGTTAAATTCACCAATATTCTAGTTCAATTGAACTCTTCTTTTTTTCTCCTTTTAATTAAATGAATGGTGTCAAGTTTCCTCGTTTGAATATGGTTTAAATTAGGGAATCCTGTTAATTAAATAATAAATTTGTTGTTGCATCATACATACCAATTAGTTTGATTTTTCTTTAGTGCATTATAGATCATGGAGCCTAATTTTCTTTTTTCTTTTTCATAAAGAAACTCCATGCTGCTAAGTATGTTATTATCAATTTTTTGAGTAATATTATACGTGCAGCTGTTCAGAAAAAACAGATTATCTAGAAATAGCTTGCATGCTATCTTACTTTCTAAATGGTCATGCTTACATCTTTAATGAACCTTTTGTGAGTGTTTGTGGAAGTTCAAGCAAACCTGTTATAAGGACATTTCAACAGCATTTAGAGATTAGACCCTTCGACGATGGAAGGTATTTGTCTAAGGTTTAGGTTTAGATATATTGTTTATTTGTACTATTTCTTAAATTTAAGCTAAGCACGTTCAAATGGGAGAAAGAGACGGTACCTAAAAACTTAAGCAAGCTCAAGATGGACTGTTGGGGAGATGGGATGCCTAGAAACTTTTTTTTGGGTACTTTTGTTACATTAAGAAATAATATTCTAACCAAGTTTGCTCATCAACAACTTGAGTTGATCAGTAATCATGGGGGTTGATATTATAAAATTACTGAAGTTCTAATTAATATTCTATGCGAACAAGTCTTTTATTCCAAATAATTATGAAAGATCATGTCCGTCCAAAAGGAAAAATCATAGGAGAGAAGAAATATATGTAATACTCGAATTATAGAACAGGTCAGAGTAATGCTAAACATAGGAGAAAATCTATAGTTTCTTAATCTTCTCGTTTGATATGGAACAAAAGATTAAAAGAAGCATAATATATTGGAACCATAACCTAATTGTATAAATTATTGATGTTAAAGAATTTCTCGGCTCCTTCCTATTAAAAGTTAAACCTCGACCTTGGCCCTGACCCTGACCCTGTGTTTAATAGCGTGGTTCTTTGTAACATGGTCAATTATCTGAAACCTGAAAAGAAAGAATGAGGTGTTGGGTAGTTGGATTCACTCCAACATCAAAGCTACTTTAACTCTCTGAGTGAGGAAGAAGCTATAGATGAGTAGGTAATTTGACAGACGACACAATCCTTAACTTTCGCAGGTAGAAATGGTGGACTGTAACATGCCCCAACATAATAATGAAAAGGGATTCGGAATGAGTCGTCAATGGAGTTTTGTAATCCTTGGCAATTGTTGTCAGTCGAGCTTGATATATCGTGTCAAGCTTAAAATGTGCTGTGGAATTAGCACAATTTGTGTCATGAAGAAACTACATAACATGTTACTTAGAGGGGGTGGTTCAACCAAGCAGTGTAGGATGCAATAGTAACAATGCTTCTTCGAGGGTTGAGTATGCTAGGAGAGCTGATTGATGCTTTCAGGATGCTATTCAAAGACTATGAAGAATAATACAAAAAATATGTTTTCAAATTTCTTTGACAAAACCTGTGGTTTCATGTGAAATTCGTAGTTCTGGAGTTATCTGTAGTGATATCCAGTATATTGAATTTGCTCAGGAGCCCAAGATTGTTCAATTTTCTCCTATCTGTAGGCTCTTTTTCATGAAGGGCTGCATTAGGAATAGACGTCCCATTTACCTAACTTCTTCAACTTGATTCATGCTTAGTCACTAACATCGAATAGCCACTTAGAACGACTATTAAGGTGGATATCAGGACAGATATACTTTTCCTTATGCTGCAATTGAAGAATTGAGTTCATTGATTTGTGGACTGCTCCATTTCAATAAACTGGACCGTTAGAATAATAAATTAGAATTGGTTGATTAGACACTTTTCCTTGAAGCGGTTACTTGTTCATATATCCTGTGGTTGGATCTATTTAGAAGAATTGAATATAGTCTCCAATATAGCATTTTAGAGACGACTTGAAGTGGTTACTTAGAAAGCTGCTAGATCTCTTTTAACTTGTGGACCTTCCCCGTGTCTTGTTTCTGATTGCATATTACAAGCTTTCCTATTTTCTACTTACCAAGAAGAAAAGCAACCAAAAGGCATAATGAAAATAATGTTTGAATCATAGGAATATGAAAGCGCAAGAAGGAAGAGTGAGTAGAAGCTGAGGCAGGTACTGTTCAACTCTGTTGGTTCTGTTATTTGGTTGCTGCACAGGAGAGGTCTGAATTTAAAGCACAAAGTATTTGCTGTCTGGAGAATTCTTTTCCAAGTTTTGATTGTAATTTCCCTTATTGTTTCACACGTGGTGTTTAAAATCTTTTGATAGCCTTGCTTTGATAGCTGTTGTGTGCAGTGTTTTGAGCACTAGCAGTTTTTCCCGTATAATTTTCCCCTTCATTTGTGGATCTGTTTTGTATTGCCTTCTTGTTGGAATAAAAATCCCATCGTAAAAAAAAAACGTTTTCCTTTCGTAATCTTGATTAATATGTGTGCTTTTCTGGAAGATAGTTGGATTTTGTTTTTAATTTTCTATTTTTAAAATTTCTAAGTTACTATCTTTTAGTTTTCAAAATTTGACTCAATTTTTTATAAACCATTGGTAATGAATAACAAAACAAACTTTTTTAGGAAGCAATCGTTTTTACAAGTTTAGTATAGAAACACCAAAAATCTGAAATGGAATAGCTACAGAATGTCCTGAGATTGAATAAGCTGAATAGCGACCTCAGAACGATAGAAGCCATAGTTGAGTTGCTTGGCTTTGATATTTAATAAATAAATAAATAAGCACTTCAGCTACAAACAATTTGATGAAAAGTGCTTAATACACATTCTTATGGACTTGTGTATTTTACAGATGAACTCTCCTGTTGTAGAACTTAATCTATTTTTGGCCTTGTTTAGAGTCTTTACCAACGTTCACGTCCGGGTTTAATGTATAATGAACACTAACCATGTGTGGCTGAAGGAAATGGCCAAAACATTCATCTGTCTTTTGCTTGCAGGCACAGGGTTTGAAAAACAGTAAGCATCATGGATCAACAGTTAAGAAGCAGAGCAGCATGGGAAGAAGC

mRNA sequence

ATGGAGGTGGTGGATAATATACAAGAACAACCGCGCAAGTTCCCAAGGTTAGCAACTGGCAGAAGTAGCGACTCCAATAAGATAGGATTAAAAGGGATTGAGAACATTCAACCGGAGGATGAAGAAGACAAAGAATCAAAAAGGGTTGGTGGTAGCACCGCGTTAGTGGGCAGTGGAGGTGTAGGAGGAGATGATGATGATGGTAATCGGCTTCGTGGATGGCACCACTCCCGGATTATTAGGGTTTCTCGAGCTTCGGGCGGGAAGGACAGGCATAGCAAGGTGTGGACTTCAAAGGGACTTAGAGATCGAAGGGTTCGATTATCGGTAGCGACGGCGATTCAGTTCTACGATCTTCAAGATCGGTTGGGTTTTGATCAACCAAGCAAGGCTATCGAGTGGCTGATCAAAGCGGCCGCGGATGCAATAGCAGAGTTGCCTTCGCTGAACGCCTCTTTTCCGGAAACTCCAAAACAGCTGAGTGGGGAAAAGATTAGTGTCACTGATGAACCCGGGTCGTTAGACCCAGTCGAGCAGAATCAGAGCCAATTACATGTTTCCTTGTCCAAATCTGCTTGCAGTAGTAACTCCGAAACCAGTAAGGGTTCAGGTTTGTCTCTCTCGCGATCTGAGGTTCGCGTGAACCGCCTCAAAGCTCGCGAAAGGGCGAAGGAGAGAGCACAAAAGGAAAAGGAAAAAGAACAGGACTCTTCTCGCATCGCCGATCATAATCTCACCTCCATGGCCCCAAATTCATCTTTCACCCAGCTACTCTCTGGCGGTGCTGCAACGGTTTCAGCTCATCGGGACGCCGGCGTGGCTGTAGAAAGGCAGTGGCAGTCATCGACCGTTGCTATGGATTACTTCAGCTCGGGAATTCTTGAGTCGTCCACTTCTAGAACTCACCACTCTTCGGGATTTTCCGAACAAATGAATTTGGGAACTCCGTTGCCACAAACCATGTCAAGCACTCCATTATTTAGCAGCGTCTCAGCTAGTGACAATAATGCGGAGCAGCTTCATCATTTCTCATTTGTTCACGATGGCAATATAATTCCCGTGGCCACAACTCAACCGGCGGGTGGCAGCGACTACAACCTCAACTTCACCATTGCTTCCAACCTTCCGGGGGGACCCTTCAGTCCAATTCATCACTTTTGCCTCATATCCAGAGGTTTTCTCCTGTTGACGGATCCAATTTACCTTTCCTCTTCGGAGCTGCGACTTCTTCGGCTGCTCCACAAATGGAAAATCATCATCATTACCAGTTTTCGCCTGCATTTGACGGTCGTTTGCAACTCTGCTATGGAGGCGGAAGCCGGCAGTCGGAACAGAAAGGAAAAGAAAAGAAATGAACTCTTTGTACAGCATATTCCTCTCAGCCTATCTTCTTCCTGGAATATGAAAGCGCAAGAAGGAAGAGCACAGGGTTTGAAAAACAGTAAGCATCATGGATCAACAGTTAAGAAGCAGAGCAGCATGGGAAGAAGC

Coding sequence (CDS)

ATGGAGGTGGTGGATAATATACAAGAACAACCGCGCAAGTTCCCAAGGTTAGCAACTGGCAGAAGTAGCGACTCCAATAAGATAGGATTAAAAGGGATTGAGAACATTCAACCGGAGGATGAAGAAGACAAAGAATCAAAAAGGGTTGGTGGTAGCACCGCGTTAGTGGGCAGTGGAGGTGTAGGAGGAGATGATGATGATGGTAATCGGCTTCGTGGATGGCACCACTCCCGGATTATTAGGGTTTCTCGAGCTTCGGGCGGGAAGGACAGGCATAGCAAGGTGTGGACTTCAAAGGGACTTAGAGATCGAAGGGTTCGATTATCGGTAGCGACGGCGATTCAGTTCTACGATCTTCAAGATCGGTTGGGTTTTGATCAACCAAGCAAGGCTATCGAGTGGCTGATCAAAGCGGCCGCGGATGCAATAGCAGAGTTGCCTTCGCTGAACGCCTCTTTTCCGGAAACTCCAAAACAGCTGAGTGGGGAAAAGATTAGTGTCACTGATGAACCCGGGTCGTTAGACCCAGTCGAGCAGAATCAGAGCCAATTACATGTTTCCTTGTCCAAATCTGCTTGCAGTAGTAACTCCGAAACCAGTAAGGGTTCAGGTTTGTCTCTCTCGCGATCTGAGGTTCGCGTGAACCGCCTCAAAGCTCGCGAAAGGGCGAAGGAGAGAGCACAAAAGGAAAAGGAAAAAGAACAGGACTCTTCTCGCATCGCCGATCATAATCTCACCTCCATGGCCCCAAATTCATCTTTCACCCAGCTACTCTCTGGCGGTGCTGCAACGGTTTCAGCTCATCGGGACGCCGGCGTGGCTGTAGAAAGGCAGTGGCAGTCATCGACCGTTGCTATGGATTACTTCAGCTCGGGAATTCTTGAGTCGTCCACTTCTAGAACTCACCACTCTTCGGGATTTTCCGAACAAATGAATTTGGGAACTCCGTTGCCACAAACCATGTCAAGCACTCCATTATTTAGCAGCGTCTCAGCTAGTGACAATAATGCGGAGCAGCTTCATCATTTCTCATTTGTTCACGATGGCAATATAATTCCCGTGGCCACAACTCAACCGGCGGGTGGCAGCGACTACAACCTCAACTTCACCATTGCTTCCAACCTTCCGGGGGGACCCTTCAGTCCAATTCATCACTTTTGCCTCATATCCAGAGGTTTTCTCCTGTTGACGGATCCAATTTACCTTTCCTCTTCGGAGCTGCGACTTCTTCGGCTGCTCCACAAATGGAAAATCATCATCATTACCAGTTTTCGCCTGCATTTGACGGTCGTTTGCAACTCTGCTATGGAGGCGGAAGCCGGCAGTCGGAACAGAAAGGAAAAGAAAAGAAATGAACTCTTTGTACAGCATATTCCTCTCAGCCTATCTTCTTCCTGGAATATGAAAGCGCAAGAAGGAAGAGCACAGGGTTTGAAAAACAGTAAGCATCATGGATCAACAGTTAAGAAGCAGAGCAGCATGGGAAGAAGC

Protein sequence

MEVVDNIQEQPRKFPRLATGRSSDSNKIGLKGIENIQPEDEEDKESKRVGGSTALVGSGGVGGDDDDGNRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDEPGSLDPVEQNQSQLHVSLSKSACSSNSETSKGSGLSLSRSEVRVNRLKARERAKERAQKEKEKEQDSSRIADHNLTSMAPNSSFTQLLSGGAATVSAHRDAGVAVERQWQSSTVAMDYFSSGILESSTSRTHHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPAGGSDYNLNFTIASNLPGGPFSPIHHFCLISRGFLLLTDPIYLSSSELRLLRLLHKWKIIIITSFRLHLTVVCNSAMEAEAGSRNRKEKKRNELFVQHIPLSLSSSWNMKAQEGRAQGLKNSKHHGSTVKKQSSMGRS

Homology

[Close]

BLAST of Carg19282 vs. NCBI nr
Match: XP_023544104.1 (transcription factor TCP2-like [Cucurbita pepo subsp. pepo] >XP_023544105.1 transcription factor TCP2-like [Cucurbita pepo subsp. pepo] >XP_023544106.1 transcription factor TCP2-like [Cucurbita pepo subsp. pepo] >XP_023544107.1 transcription factor TCP2-like [Cucurbita pepo subsp. pepo] >XP_023544108.1 transcription factor TCP2-like [Cucurbita pepo subsp. pepo] >XP_023544109.1 transcription factor TCP2-like [Cucurbita pepo subsp. pepo] >XP_023544110.1 transcription factor TCP2-like [Cucurbita pepo subsp. pepo] >XP_023544111.1 transcription factor TCP2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 556.6 bits (1433), Expect = 8.5e-155
Identity = 358/377 (94.96%), Postives = 361/377 (95.76%), Query Frame = 0


Query: 1   MEVVDNIQEQPRKFPRLATGRSSDSNKIGLKGIENIQPEXXXXXXXXXVGGSTALVXXXX 60
           MEVVDNIQEQPRKFPRLATGRSSDSNKIGLKGIENIQPE  XXXX   VGGSTALV    
Sbjct: 1   MEVVDNIQEQPRKFPRLATGRSSDSNKIGLKGIENIQPEDEXXXXSKRVGGSTALVGSGV 60

Query: 61  XXXXXXXGNRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120
                  GN+LRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ
Sbjct: 61  VVGDDDDGNQLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120

Query: 121 DRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDEPGSLDPVEQN 180
           DRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTD+PGSLDPVEQN
Sbjct: 121 DRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDQPGSLDPVEQN 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240

Query: 241 ADHNLTSMAPNSSFTQLLSGGAATVSAHRDAGVAVERQWQSSTVAMDYFSSGILESSTSR 300
           ADHNLTSMAPNSSFT+LLSGGAATVSAHRDAGVAVERQWQSSTVAMDYFSSGILESSTSR
Sbjct: 241 ADHNLTSMAPNSSFTELLSGGAATVSAHRDAGVAVERQWQSSTVAMDYFSSGILESSTSR 300

Query: 301 THHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPA 360
           THHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPA
Sbjct: 301 THHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPA 360

Query: 361 GGSDYNLNFTIASNLPG 378
           GGSDYNLNFTIASNLPG
Sbjct: 361 GGSDYNLNFTIASNLPG 377

[Close]

BLAST of Carg19282 vs. NCBI nr
Match: KGN49410.1 (hypothetical protein Csa_6G524000 [Cucumis sativus])

HSP 1 Score: 554.7 bits (1428), Expect = 3.2e-154
Identity = 368/476 (77.31%), Postives = 389/476 (81.72%), Query Frame = 0


Query: 1   MEVVDNIQEQPRKFPRLATGRSSDSNKIGLKGIENIQPEXXXXXXXXXVGGSTALVXXXX 60
           MEVVDNIQEQPRKFPRLA GRSSDSN+IGLKG+ENI             GG TA V    
Sbjct: 1   MEVVDNIQEQPRKFPRLANGRSSDSNEIGLKGVENIHTGDEKDKESKRDGGITAGVGGGG 60

Query: 61  XXXXXXXGNRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120
                   NRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ
Sbjct: 61  LGGADDETNRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120

Query: 121 DRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDEPGSLDPVEQN 180
           DRLGF+QPSKA+EWLIKAAADAI ELPSLNASFPETPKQLSGEKISVTD PG LD VEQ 
Sbjct: 121 DRLGFEQPSKAVEWLIKAAADAIKELPSLNASFPETPKQLSGEKISVTDRPGPLDSVEQX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240

Query: 241 ADHNLTSMAPNSSFTQLLSGGAATVSAHRDAGVAVERQWQSSTVAMDYFSSGILESSTSR 300
            DHNL+SM  NSSFT+LL+GGAA+VSAHRDAGVA ERQWQSSTVAMDYFSSGILE STSR
Sbjct: 241 TDHNLSSMTRNSSFTELLAGGAASVSAHRDAGVAAERQWQSSTVAMDYFSSGILEPSTSR 300

Query: 301 THHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPA 360
           THHSSGFS+QMNLGT LPQTMSSTPLFSSVS  D+NAEQLH FSFVHDGNI+PVATTQP 
Sbjct: 301 THHSSGFSDQMNLGTSLPQTMSSTPLFSSVSTGDSNAEQLHQFSFVHDGNIVPVATTQPG 360

Query: 361 GGSDYNLNFTIASNLPGGPFSPIHHFCLISRGFLLLTDPIYLSSSELRLLRLLHKWKIII 420
           GG+DY+LNFTI+SNLPG             RG L        S+S L    L H      
Sbjct: 361 GGNDYSLNFTISSNLPG-----------YYRGTL-------QSNSSL----LPH------ 420

Query: 421 ITSFRLHLTVVCNSAMEAEAGSRNRKEKKRNELFVQHIPLSLSSSWNMKAQEGRAQ 477
           + SFRLHLT VCN AMEA  GSRNRKEK+R E FVQHIPL LSSSWN+K +EG+ +
Sbjct: 421 LQSFRLHLTAVCNFAMEAGTGSRNRKEKERTEFFVQHIPLGLSSSWNIKGKEGKTR 448

[Close]

BLAST of Carg19282 vs. NCBI nr
Match: XP_022925921.1 (transcription factor TCP2-like [Cucurbita moschata] >XP_022925922.1 transcription factor TCP2-like [Cucurbita moschata] >XP_022925923.1 transcription factor TCP2-like [Cucurbita moschata] >XP_022925924.1 transcription factor TCP2-like [Cucurbita moschata] >XP_022925925.1 transcription factor TCP2-like [Cucurbita moschata] >XP_022925926.1 transcription factor TCP2-like [Cucurbita moschata])

HSP 1 Score: 548.5 bits (1412), Expect = 2.3e-152
Identity = 369/377 (97.88%), Postives = 372/377 (98.67%), Query Frame = 0


Query: 1   MEVVDNIQEQPRKFPRLATGRSSDSNKIGLKGIENIQPEXXXXXXXXXVGGSTALVXXXX 60
           MEVVDNIQEQPRKFPRLATGRSSDSNKIGLKG+ENIQPE XXXXXXXXVGGST   XXXX
Sbjct: 1   MEVVDNIQEQPRKFPRLATGRSSDSNKIGLKGVENIQPEDXXXXXXXXVGGSTXXXXXXX 60

Query: 61  XXXXXXXGNRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120
           XXXXXXXGNRLRGWHHSRIIRVS+ASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ
Sbjct: 61  XXXXXXXGNRLRGWHHSRIIRVSQASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120

Query: 121 DRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDEPGSLDPVEQN 180
           DRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTD+P SLDPVEQN
Sbjct: 121 DRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDQPRSLDPVEQN 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240

Query: 241 ADHNLTSMAPNSSFTQLLSGGAATVSAHRDAGVAVERQWQSSTVAMDYFSSGILESSTSR 300
           ADHNLTSMAPNSSFTQLLSGGAATVSAHRDAGVAVERQWQSSTVAMDYFSSGILESSTSR
Sbjct: 241 ADHNLTSMAPNSSFTQLLSGGAATVSAHRDAGVAVERQWQSSTVAMDYFSSGILESSTSR 300

Query: 301 THHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPA 360
           THHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPA
Sbjct: 301 THHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPA 360

Query: 361 GGSDYNLNFTIASNLPG 378
           GGSDYNLNFTIASNLPG
Sbjct: 361 GGSDYNLNFTIASNLPG 377

[Close]

BLAST of Carg19282 vs. NCBI nr
Match: XP_022978832.1 (transcription factor TCP2-like [Cucurbita maxima] >XP_022978833.1 transcription factor TCP2-like [Cucurbita maxima] >XP_022978834.1 transcription factor TCP2-like [Cucurbita maxima] >XP_022978835.1 transcription factor TCP2-like [Cucurbita maxima] >XP_022978836.1 transcription factor TCP2-like [Cucurbita maxima] >XP_022978837.1 transcription factor TCP2-like [Cucurbita maxima] >XP_022978839.1 transcription factor TCP2-like [Cucurbita maxima])

HSP 1 Score: 528.5 bits (1360), Expect = 2.5e-146
Identity = 361/377 (95.76%), Postives = 365/377 (96.82%), Query Frame = 0


Query: 1   MEVVDNIQEQPRKFPRLATGRSSDSNKIGLKGIENIQPEXXXXXXXXXVGGSTALVXXXX 60
           MEVVDNIQEQPRKFPRLAT RSSDSNKIGLKGIENIQPEXXXXXXXXX        XXXX
Sbjct: 1   MEVVDNIQEQPRKFPRLATSRSSDSNKIGLKGIENIQPEXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXGNRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120
           XXXXXXX  RLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ
Sbjct: 61  XXXXXXXXXRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120

Query: 121 DRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDEPGSLDPVEQN 180
           DRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTD+PGSLDPVEQN
Sbjct: 121 DRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDQPGSLDPVEQN 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240

Query: 241 ADHNLTSMAPNSSFTQLLSGGAATVSAHRDAGVAVERQWQSSTVAMDYFSSGILESSTSR 300
           ADHNLTSMAPNSSFT+LLSGG+ATVSAHRDAG+AVERQWQSSTVAMDYFSSGILESSTSR
Sbjct: 241 ADHNLTSMAPNSSFTELLSGGSATVSAHRDAGMAVERQWQSSTVAMDYFSSGILESSTSR 300

Query: 301 THHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPA 360
           THHSSGFSEQMNLGTPLPQTMS TPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPA
Sbjct: 301 THHSSGFSEQMNLGTPLPQTMSITPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPA 360

Query: 361 GGSDYNLNFTIASNLPG 378
           GGSDYNLNFTIASNLPG
Sbjct: 361 GGSDYNLNFTIASNLPG 377

[Close]

BLAST of Carg19282 vs. NCBI nr
Match: XP_004134620.1 (PREDICTED: transcription factor TCP2-like [Cucumis sativus])

HSP 1 Score: 490.3 bits (1261), Expect = 7.5e-135
Identity = 320/377 (84.88%), Postives = 334/377 (88.59%), Query Frame = 0


Query: 1   MEVVDNIQEQPRKFPRLATGRSSDSNKIGLKGIENIQPEXXXXXXXXXVGGSTALVXXXX 60
           MEVVDNIQEQPRKFPRLA GRSSDSN+IGLKG+ENI             GG TA V    
Sbjct: 1   MEVVDNIQEQPRKFPRLANGRSSDSNEIGLKGVENIHTGDEKDKESKRDGGITAGVGGGG 60

Query: 61  XXXXXXXGNRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120
                   NRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ
Sbjct: 61  LGGADDETNRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120

Query: 121 DRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDEPGSLDPVEQN 180
           DRLGF+QPSKA+EWLIKAAADAI ELPSLNASFPETPKQLSGEKISVTD PG LD VEQ 
Sbjct: 121 DRLGFEQPSKAVEWLIKAAADAIKELPSLNASFPETPKQLSGEKISVTDRPGPLDSVEQX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240

Query: 241 ADHNLTSMAPNSSFTQLLSGGAATVSAHRDAGVAVERQWQSSTVAMDYFSSGILESSTSR 300
            DHNL+SM  NSSFT+LL+GGAA+VSAHRDAGVA ERQWQSSTVAMDYFSSGILE STSR
Sbjct: 241 TDHNLSSMTRNSSFTELLAGGAASVSAHRDAGVAAERQWQSSTVAMDYFSSGILEPSTSR 300

Query: 301 THHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPA 360
           THHSSGFS+QMNLGT LPQTMSSTPLFSSVS  D+NAEQLH FSFVHDGNI+PVATTQP 
Sbjct: 301 THHSSGFSDQMNLGTSLPQTMSSTPLFSSVSTGDSNAEQLHQFSFVHDGNIVPVATTQPG 360

Query: 361 GGSDYNLNFTIASNLPG 378
           GG+DY+LNFTI+SNLPG
Sbjct: 361 GGNDYSLNFTISSNLPG 377

[Close]

BLAST of Carg19282 vs. TAIR10
Match: AT4G18390.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2)

HSP 1 Score: 142.1 bits (357), Expect = 9.1e-34
Identity = 155/325 (47.69%), Postives = 184/325 (56.62%), Query Frame = 0


Query: 69  NRLRGWHH--SRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFD 128
           NRL  WHH  SRIIRVSRASGGKDRHSKV TSKG RDRRVRLSV+TA+QFYDLQDRLG+D
Sbjct: 21  NRLSRWHHNSSRIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYD 80

Query: 129 QPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDEPGSLDPVEQNXXXXXX 188
           QPSKA+EWLIKAA D+I+ELPSLN +   T  +    +   T    SL            
Sbjct: 81  QPSKAVEWLIKAAEDSISELPSLNNTHFPTDDENHQNQTLTTVAANSLS----------- 140

Query: 189 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIADHNLT 248
                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    DHN  
Sbjct: 141 ------------KSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHN-- 200

Query: 249 SMAPNSSFTQLLSGGAATVSAHRDAGVAVERQWQSSTVA---MDYFSSGILESSTSRTHH 308
               ++SFT LL+ G+  V+++        RQW +S  +   M+YFSSG++  S  +TH 
Sbjct: 201 ----HTSFTDLLNSGSDPVNSN--------RQWMASAPSSSPMEYFSSGLILGSGQQTH- 260

Query: 309 SSGFSEQMNLGTPLPQTMSSTPLFSSVS--ASDNNAEQLHHFSFVHDGNIIPVATTQPAG 368
                         P + +S P FSS+S              SFV D  I P  +   A 
Sbjct: 261 -------------FPISTNSHP-FSSISXXXXXXXXXXXXXXSFVPDHLISPAESNGGAF 293

Query: 369 GSDYNLNF-----TIASNLPGGPFS 382
             D+N++         S   GG FS
Sbjct: 321 NLDFNMSTPSGAGAAVSAASGGGFS 293

[Close]

BLAST of Carg19282 vs. TAIR10
Match: AT1G30210.1 (TEOSINTE BRANCHED 1, cycloidea, and PCF family 24)

HSP 1 Score: 137.5 bits (345), Expect = 2.2e-32
Identity = 68/85 (80.00%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 71  LRGWHH--SRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFDQP 130
           +R W++  SRIIRVSRASGGKDRHSKV TSKGLRDRR+RLSVATAIQFYDLQDRLGFDQP
Sbjct: 31  MRNWNNPSSRIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQP 90

Query: 131 SKAIEWLIKAAADAIAELPSLNASF 154
           SKA+EWLI AA+D+I +LP LN +F
Sbjct: 91  SKAVEWLINAASDSITDLPLLNTNF 115

[Close]

BLAST of Carg19282 vs. TAIR10
Match: AT3G02150.2 (plastid transcription factor 1)

HSP 1 Score: 110.2 bits (274), Expect = 3.8e-24
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 78  RIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLIK 137
           RI+RVSRA GGKDRHSKV T +GLRDRRVRLSV TAIQ YDLQ+RLG DQPSKA++WL+ 
Sbjct: 64  RIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLD 123

Query: 138 AAADAIAELPSLNASFPETPKQLS 162
           AA + I ELP L    P +P+  S
Sbjct: 124 AAKEEIDELPPL----PISPENFS 143

[Close]

BLAST of Carg19282 vs. TAIR10
Match: AT5G60970.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5)

HSP 1 Score: 106.7 bits (265), Expect = 4.2e-23
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 74  WHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIE 133
           + + RI+RVSR  GGKDRHSKV T +GLRDRR+RLSV TAIQ YDLQDRLG  QPSK I+
Sbjct: 49  FRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVID 108

Query: 134 WLIKAAADAIAELPSLNASFPETPKQL 161
           WL++AA D + +LP L   FP    Q+
Sbjct: 109 WLLEAAKDDVDKLPPL--QFPHGFNQM 133

[Close]

BLAST of Carg19282 vs. TAIR10
Match: AT5G08070.1 (TCP domain protein 17)

HSP 1 Score: 105.9 bits (263), Expect = 7.2e-23
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 74  WHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIE 133
           W++ RI+RVSRA GGKDRHSKV T +GLRDRR+RLSV TAIQ YDLQ+RLG  QPSK I+
Sbjct: 19  WNNPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVID 78

Query: 134 WLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDE-PGSLD 176
           WL++ A + +  LP L   FP    QL+     + +  PG  D
Sbjct: 79  WLLEVAKNDVDLLPPL--QFPPGFHQLNPNLTGLGESFPGVFD 119

[Close]

BLAST of Carg19282 vs. Swiss-Prot
Match: sp|Q93V43|TCP2_ARATH (Transcription factor TCP2 OS=Arabidopsis thaliana OX=3702 GN=TCP2 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.6e-32
Identity = 155/325 (47.69%), Postives = 184/325 (56.62%), Query Frame = 0


Query: 69  NRLRGWHH--SRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFD 128
           NRL  WHH  SRIIRVSRASGGKDRHSKV TSKG RDRRVRLSV+TA+QFYDLQDRLG+D
Sbjct: 21  NRLSRWHHNSSRIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYD 80

Query: 129 QPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDEPGSLDPVEQNXXXXXX 188
           QPSKA+EWLIKAA D+I+ELPSLN +   T  +    +   T    SL            
Sbjct: 81  QPSKAVEWLIKAAEDSISELPSLNNTHFPTDDENHQNQTLTTVAANSLS----------- 140

Query: 189 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRIADHNLT 248
                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    DHN  
Sbjct: 141 ------------KSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHN-- 200

Query: 249 SMAPNSSFTQLLSGGAATVSAHRDAGVAVERQWQSSTVA---MDYFSSGILESSTSRTHH 308
               ++SFT LL+ G+  V+++        RQW +S  +   M+YFSSG++  S  +TH 
Sbjct: 201 ----HTSFTDLLNSGSDPVNSN--------RQWMASAPSSSPMEYFSSGLILGSGQQTH- 260

Query: 309 SSGFSEQMNLGTPLPQTMSSTPLFSSVS--ASDNNAEQLHHFSFVHDGNIIPVATTQPAG 368
                         P + +S P FSS+S              SFV D  I P  +   A 
Sbjct: 261 -------------FPISTNSHP-FSSISXXXXXXXXXXXXXXSFVPDHLISPAESNGGAF 293

Query: 369 GSDYNLNF-----TIASNLPGGPFS 382
             D+N++         S   GG FS
Sbjct: 321 NLDFNMSTPSGAGAAVSAASGGGFS 293

[Close]

BLAST of Carg19282 vs. Swiss-Prot
Match: sp|Q9C758|TCP24_ARATH (Transcription factor TCP24 OS=Arabidopsis thaliana OX=3702 GN=TCP24 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.0e-31
Identity = 68/85 (80.00%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 71  LRGWHH--SRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFDQP 130
           +R W++  SRIIRVSRASGGKDRHSKV TSKGLRDRR+RLSVATAIQFYDLQDRLGFDQP
Sbjct: 31  MRNWNNPSSRIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQP 90

Query: 131 SKAIEWLIKAAADAIAELPSLNASF 154
           SKA+EWLI AA+D+I +LP LN +F
Sbjct: 91  SKAVEWLINAASDSITDLPLLNTNF 115

[Close]

BLAST of Carg19282 vs. Swiss-Prot
Match: sp|A2XMN1|PCF6_ORYSI (Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.0e-26
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 77  SRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLI 136
           SRI RV RA+GGKDRHSKV+T+KG+RDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLI
Sbjct: 42  SRIYRV-RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLI 101

Query: 137 KAAADAIAELPSLN-ASFPETP 158
            AA+ AI  LPSL+ A+F   P
Sbjct: 102 NAASPAIDTLPSLDPAAFAAIP 122

[Close]

BLAST of Carg19282 vs. Swiss-Prot
Match: sp|Q10CE8|PCF6_ORYSJ (Transcription factor PCF6 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF6 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.0e-26
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 77  SRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLI 136
           SRI RV RA+GGKDRHSKV+T+KG+RDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLI
Sbjct: 42  SRIYRV-RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLI 101

Query: 137 KAAADAIAELPSLN-ASFPETP 158
            AA+ AI  LPSL+ A+F   P
Sbjct: 102 NAASPAIDTLPSLDPAAFAAIP 122

[Close]

BLAST of Carg19282 vs. Swiss-Prot
Match: sp|A2ZMR9|PCF8_ORYSI (Transcription factor PCF8 OS=Oryza sativa subsp. indica OX=39946 GN=PCF8 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.6e-25
Identity = 60/80 (75.00%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 74  WHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIE 133
           W  SR+ R   A+GGKDRHSKV TS+GLRDRRVRLSV TAI FYD+QDRLG DQPSKAIE
Sbjct: 34  WRTSRVARA--AAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIE 93

Query: 134 WLIKAAADAIAELPSLNASF 154
           WLI+AAA AI  LPSL+ SF
Sbjct: 94  WLIRAAAAAIDALPSLDCSF 111

[Close]

BLAST of Carg19282 vs. TrEMBL
Match: tr|A0A0A0KI57|A0A0A0KI57_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524000 PE=4 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 2.1e-154
Identity = 368/476 (77.31%), Postives = 389/476 (81.72%), Query Frame = 0


Query: 1   MEVVDNIQEQPRKFPRLATGRSSDSNKIGLKGIENIQPEXXXXXXXXXVGGSTALVXXXX 60
           MEVVDNIQEQPRKFPRLA GRSSDSN+IGLKG+ENI             GG TA V    
Sbjct: 1   MEVVDNIQEQPRKFPRLANGRSSDSNEIGLKGVENIHTGDEKDKESKRDGGITAGVGGGG 60

Query: 61  XXXXXXXGNRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120
                   NRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ
Sbjct: 61  LGGADDETNRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120

Query: 121 DRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDEPGSLDPVEQN 180
           DRLGF+QPSKA+EWLIKAAADAI ELPSLNASFPETPKQLSGEKISVTD PG LD VEQ 
Sbjct: 121 DRLGFEQPSKAVEWLIKAAADAIKELPSLNASFPETPKQLSGEKISVTDRPGPLDSVEQX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240

Query: 241 ADHNLTSMAPNSSFTQLLSGGAATVSAHRDAGVAVERQWQSSTVAMDYFSSGILESSTSR 300
            DHNL+SM  NSSFT+LL+GGAA+VSAHRDAGVA ERQWQSSTVAMDYFSSGILE STSR
Sbjct: 241 TDHNLSSMTRNSSFTELLAGGAASVSAHRDAGVAAERQWQSSTVAMDYFSSGILEPSTSR 300

Query: 301 THHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPA 360
           THHSSGFS+QMNLGT LPQTMSSTPLFSSVS  D+NAEQLH FSFVHDGNI+PVATTQP 
Sbjct: 301 THHSSGFSDQMNLGTSLPQTMSSTPLFSSVSTGDSNAEQLHQFSFVHDGNIVPVATTQPG 360

Query: 361 GGSDYNLNFTIASNLPGGPFSPIHHFCLISRGFLLLTDPIYLSSSELRLLRLLHKWKIII 420
           GG+DY+LNFTI+SNLPG             RG L        S+S L    L H      
Sbjct: 361 GGNDYSLNFTISSNLPG-----------YYRGTL-------QSNSSL----LPH------ 420

Query: 421 ITSFRLHLTVVCNSAMEAEAGSRNRKEKKRNELFVQHIPLSLSSSWNMKAQEGRAQ 477
           + SFRLHLT VCN AMEA  GSRNRKEK+R E FVQHIPL LSSSWN+K +EG+ +
Sbjct: 421 LQSFRLHLTAVCNFAMEAGTGSRNRKEKERTEFFVQHIPLGLSSSWNIKGKEGKTR 448

[Close]

BLAST of Carg19282 vs. TrEMBL
Match: tr|A0A1S3AZT2|A0A1S3AZT2_CUCME (transcription factor TCP2-like OS=Cucumis melo OX=3656 GN=LOC103484355 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 3.9e-132
Identity = 321/377 (85.15%), Postives = 339/377 (89.92%), Query Frame = 0


Query: 1   MEVVDNIQEQPRKFPRLATGRSSDSNKIGLKGIENIQPEXXXXXXXXXVGGSTALVXXXX 60
           MEVVDNIQEQPRKFPRLA GRSSDSN+IGLKG EN++            GG T  V XXX
Sbjct: 1   MEVVDNIQEQPRKFPRLANGRSSDSNEIGLKGAENVRRGDEKDKESKRDGGITG-VGXXX 60

Query: 61  XXXXXXXGNRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120
           XXX     NRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ
Sbjct: 61  XXXADDETNRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQ 120

Query: 121 DRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDEPGSLDPVEQN 180
           DRLGF+QPSKA+EWLIKAAADAI ELPSLNASFPETPKQLSGEK SVTD+PG+LD VEQ 
Sbjct: 121 DRLGFEQPSKAVEWLIKAAADAIKELPSLNASFPETPKQLSGEKFSVTDQPGTLDSVEQX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRI 240

Query: 241 ADHNLTSMAPNSSFTQLLSGGAATVSAHRDAGVAVERQWQSSTVAMDYFSSGILESSTSR 300
            DHNL+SM  NSSFT+LL+GGAA+VS HRDAGVA ERQWQSSTVAMDYFSSGILE STSR
Sbjct: 241 TDHNLSSMTRNSSFTELLAGGAASVSTHRDAGVAAERQWQSSTVAMDYFSSGILEPSTSR 300

Query: 301 THHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNAEQLHHFSFVHDGNIIPVATTQPA 360
           THHSSGFS+QMNLGT LPQ+MSSTPLFSSVS  D+NAEQLH FSFVHDGNI+PVATTQP 
Sbjct: 301 THHSSGFSDQMNLGTSLPQSMSSTPLFSSVSTGDSNAEQLHQFSFVHDGNIVPVATTQPG 360

Query: 361 GGSDYNLNFTIASNLPG 378
           GG+DY+LNFTI+SNLPG
Sbjct: 361 GGNDYSLNFTISSNLPG 376

[Close]

BLAST of Carg19282 vs. TrEMBL
Match: tr|A0A061GDP3|A0A061GDP3_THECC (Teosinte branched 1, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_029442 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.3e-68
Identity = 254/401 (63.34%), Postives = 290/401 (72.32%), Query Frame = 0


Query: 4   VDNIQEQPRKFPRLATGRSSDSNKIGLKGIENIQPEXXXXXXXXXVGGSTALVXXXXXXX 63
           V+ IQ Q  KF R+  GR +DS+KIG K  +N  P+  XXXXXXX        XXXXXXX
Sbjct: 3   VEEIQTQACKFSRVGNGR-NDSSKIGQKVSDN-YPDDEXXXXXXXXXXXXXXXXXXXXXX 62

Query: 64  XXXXGNRLRGWHH-SRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDR 123
           XX   NRLRGWHH SRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSV TAIQFYDLQDR
Sbjct: 63  XXAGTNRLRGWHHSSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDR 122

Query: 124 LGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDEPGSLDPVE---- 183
           LG+DQPSKA+EWLIKAA+DAIAELPSLN+SFP+TPKQLS EK +        D  E    
Sbjct: 123 LGYDQPSKAVEWLIKAASDAIAELPSLNSSFPDTPKQLSDEKRASGGNEQGFDSAEVEXX 182

Query: 184 --QNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 243
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242

Query: 244 XSRIADH-NLTSMAPNSSFTQLLSGG---------AATVSAHRDAG--------VAVERQ 303
           X  IA H N+  ++ NSSFT+LL+GG         + T SAH++              RQ
Sbjct: 243 XXXIAHHQNVNPISQNSSFTELLTGGIGSVGNNNASPTASAHQNPNGEPDFFHKANTARQ 302

Query: 304 WQSSTVAMDYFSSGIL-ESSTSRTHHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNA 363
           W  +   MDYF+SG+L  SS+SR+HHSSGF  Q+ LG  LPQ++S +P     + S  N 
Sbjct: 303 WPGT--PMDYFTSGLLAPSSSSRSHHSSGFPGQIQLGNSLPQSISISPF----NVSGENH 362

Query: 364 EQLHHFSFV-HDGNIIPVATTQPAGGSDYNLNFTIASNLPG 378
           ++L HFSFV +  ++IPVATTQP  G DYNLNFTI+S L G
Sbjct: 363 QELQHFSFVPNPDHLIPVATTQPGPGGDYNLNFTISSGLAG 395

[Close]

BLAST of Carg19282 vs. TrEMBL
Match: tr|A0A061GKS6|A0A061GKS6_THECC (Teosinte branched 1, putative isoform 4 (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_029442 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 2.3e-68
Identity = 254/401 (63.34%), Postives = 290/401 (72.32%), Query Frame = 0


Query: 4   VDNIQEQPRKFPRLATGRSSDSNKIGLKGIENIQPEXXXXXXXXXVGGSTALVXXXXXXX 63
           V+ IQ Q  KF R+  GR +DS+KIG K  +N  P+  XXXXXXX        XXXXXXX
Sbjct: 3   VEEIQTQACKFSRVGNGR-NDSSKIGQKVSDN-YPDDEXXXXXXXXXXXXXXXXXXXXXX 62

Query: 64  XXXXGNRLRGWHH-SRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDR 123
           XX   NRLRGWHH SRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSV TAIQFYDLQDR
Sbjct: 63  XXAGTNRLRGWHHSSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDR 122

Query: 124 LGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDEPGSLDPVE---- 183
           LG+DQPSKA+EWLIKAA+DAIAELPSLN+SFP+TPKQLS EK +        D  E    
Sbjct: 123 LGYDQPSKAVEWLIKAASDAIAELPSLNSSFPDTPKQLSDEKRASGGNEQGFDSAEVEXX 182

Query: 184 --QNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 243
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242

Query: 244 XSRIADH-NLTSMAPNSSFTQLLSGG---------AATVSAHRDAG--------VAVERQ 303
           X  IA H N+  ++ NSSFT+LL+GG         + T SAH++              RQ
Sbjct: 243 XXXIAHHQNVNPISQNSSFTELLTGGIGSVGNNNASPTASAHQNPNGEPDFFHKANTARQ 302

Query: 304 WQSSTVAMDYFSSGIL-ESSTSRTHHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNA 363
           W  +   MDYF+SG+L  SS+SR+HHSSGF  Q+ LG  LPQ++S +P     + S  N 
Sbjct: 303 WPGT--PMDYFTSGLLAPSSSSRSHHSSGFPGQIQLGNSLPQSISISPF----NVSGENH 362

Query: 364 EQLHHFSFV-HDGNIIPVATTQPAGGSDYNLNFTIASNLPG 378
           ++L HFSFV +  ++IPVATTQP  G DYNLNFTI+S L G
Sbjct: 363 QELQHFSFVPNPDHLIPVATTQPGPGGDYNLNFTISSGLAG 395

[Close]

BLAST of Carg19282 vs. TrEMBL
Match: tr|A0A2I4EJY3|A0A2I4EJY3_9ROSI (transcription factor TCP2-like OS=Juglans regia OX=51240 GN=LOC108990257 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 3.4e-67
Identity = 243/402 (60.45%), Postives = 276/402 (68.66%), Query Frame = 0


Query: 1   MEVVDNIQEQPRKFPRLATGRSSDSNKIGLKGIENIQPEXXXXXXXXXVG-GSTALVXXX 60
           MEV D  Q    KFPR+  GR +DS KIG KG+ +  P+         VG GS A     
Sbjct: 1   MEVEDIQQATACKFPRIGNGR-NDSGKIGSKGVPDHYPDDEEDGELNRVGPGSDA----- 60

Query: 61  XXXXXXXXGNRLRGWHHSRIIRVSRASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDL 120
                    NRLRGW+HSRIIRV RASGGKDRHSKVWTSKGLRDRRVRLSV TAIQFYDL
Sbjct: 61  -----GGNVNRLRGWNHSRIIRVPRASGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDL 120

Query: 121 QDRLGFDQPSKAIEWLIKAAADAIAELPSLNASFPETPKQLSGEKISVTDEPGSLD---- 180
           QDRLG DQPSKA+EWLIKAAAD+IAELPSLN +FP+TPKQLS EK +        D    
Sbjct: 121 QDRLGVDQPSKAVEWLIKAAADSIAELPSLN-TFPDTPKQLSDEKRANGGTEQGFDSAAV 180

Query: 181 PVEQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
            ++ +    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 ELDGDPNFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXSRIADHNLTSMAPNSSFTQLLSGGAATV---------SAHRDAGV-------AVERQW 300
           XXSRIA  N+  ++ N+SFT+LL+GG ++V         SAH++ G        A  RQW
Sbjct: 241 XXSRIA-QNVNQISHNASFTELLTGGISSVNNNANSPTRSAHQNPGCEANLFHKAAARQW 300

Query: 301 QSSTVAMDYFSSGILESSTSRTHHSSGFSEQMNLGTPLPQTMSSTPLFSSVSASDNNAEQ 360
             ST  MDYF SG+L  S SR HHSSGFS Q++LG  LP TM S P F   + S +N  +
Sbjct: 301 TGST-PMDYFDSGLLGPS-SRAHHSSGFSGQIHLGNSLPMTM-SVPAF---NLSGDNHSE 360

Query: 361 LHHFSFVHDGNIIPV--ATTQPAGGS-DYNLNFTIASNLPGG 379
           L HFSFV D  +IPV  AT+QP GG  DYNLNFTI+S    G
Sbjct: 361 LQHFSFVPD-PLIPVASATSQPGGGPVDYNLNFTISSGQLAG 382

The following BLAST results are available for this feature:

BLAST of Carg19282 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544104.1	8.5e-155	94.96	transcription factor TCP2-like [Cucurbita pepo subsp. pepo] >XP_023544105.1 tran...	[more]
KGN49410.1	3.2e-154	77.31	hypothetical protein Csa_6G524000 [Cucumis sativus]	[more]
XP_022925921.1	2.3e-152	97.88	transcription factor TCP2-like [Cucurbita moschata] >XP_022925922.1 transcriptio...	[more]
XP_022978832.1	2.5e-146	95.76	transcription factor TCP2-like [Cucurbita maxima] >XP_022978833.1 transcription ...	[more]
XP_004134620.1	7.5e-135	84.88	PREDICTED: transcription factor TCP2-like [Cucumis sativus]	[more]

BLAST of Carg19282 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18390.1	9.1e-34	47.69	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2	[more]
AT1G30210.1	2.2e-32	80.00	TEOSINTE BRANCHED 1, cycloidea, and PCF family 24	[more]
AT3G02150.2	3.8e-24	67.86	plastid transcription factor 1	[more]
AT5G60970.1	4.2e-23	62.07	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5	[more]
AT5G08070.1	7.2e-23	55.34	TCP domain protein 17	[more]

BLAST of Carg19282 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93V43\|TCP2_ARATH	1.6e-32	47.69	Transcription factor TCP2 OS=Arabidopsis thaliana OX=3702 GN=TCP2 PE=1 SV=1	[more]
sp\|Q9C758\|TCP24_ARATH	4.0e-31	80.00	Transcription factor TCP24 OS=Arabidopsis thaliana OX=3702 GN=TCP24 PE=1 SV=1	[more]
sp\|A2XMN1\|PCF6_ORYSI	3.0e-26	79.27	Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV...	[more]
sp\|Q10CE8\|PCF6_ORYSJ	3.0e-26	79.27	Transcription factor PCF6 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF6 PE=2 ...	[more]
sp\|A2ZMR9\|PCF8_ORYSI	9.6e-25	75.00	Transcription factor PCF8 OS=Oryza sativa subsp. indica OX=39946 GN=PCF8 PE=4 SV...	[more]

BLAST of Carg19282 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KI57\|A0A0A0KI57_CUCSA	2.1e-154	77.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524000 PE=4 SV=1	[more]
tr\|A0A1S3AZT2\|A0A1S3AZT2_CUCME	3.9e-132	85.15	transcription factor TCP2-like OS=Cucumis melo OX=3656 GN=LOC103484355 PE=4 SV=1	[more]
tr\|A0A061GDP3\|A0A061GDP3_THECC	2.3e-68	63.34	Teosinte branched 1, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_029442...	[more]
tr\|A0A061GKS6\|A0A061GKS6_THECC	2.3e-68	63.34	Teosinte branched 1, putative isoform 4 (Fragment) OS=Theobroma cacao OX=3641 GN...	[more]
tr\|A0A2I4EJY3\|A0A2I4EJY3_9ROSI	3.4e-67	60.45	transcription factor TCP2-like OS=Juglans regia OX=51240 GN=LOC108990257 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017888	CYC/TB1_R_domain
IPR017887	TF_TCP_subgr
IPR005333	Transcription_factor_TCP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19282-RA	Carg19282-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 214..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 472..497
None	No IPR available	PANTHER	PTHR31072:SF2	TRANSCRIPTION FACTOR TCP24	coord: 5..373
None	No IPR available	PANTHER	PTHR31072	FAMILY NOT NAMED	coord: 5..373
IPR005333	Transcription factor, TCP	PFAM	PF03634	TCP	coord: 87..233 e-value: 8.0E-41 score: 140.1
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 88..146 score: 31.848
IPR017888	CYC/TB1, R domain	PROSITE	PS51370	R	coord: 213..231 score: 8.617

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19282	Cla019567	Watermelon (97103) v1	carwmB0291
Carg19282	Cla009785	Watermelon (97103) v1	carwmB0292
Carg19282	Csa6G524000	Cucumber (Chinese Long) v2	carcuB0326
Carg19282	MELO3C007121	Melon (DHL92) v3.5.1	carmeB0301
Carg19282	MELO3C002754	Melon (DHL92) v3.5.1	carmeB0300
Carg19282	ClCG01G024760	Watermelon (Charleston Gray)	carwcgB0292
Carg19282	ClCG03G006640	Watermelon (Charleston Gray)	carwcgB0293
Carg19282	CSPI06G36420	Wild cucumber (PI 183967)	carcpiB0332
Carg19282	Cucsa.047860	Cucumber (Gy14) v1	carcgyB0350
Carg19282	CmaCh07G000940	Cucurbita maxima (Rimu)	carcmaB0415
Carg19282	CmaCh18G004800	Cucurbita maxima (Rimu)	carcmaB0412
Carg19282	CmaCh03G014130	Cucurbita maxima (Rimu)	carcmaB0413
Carg19282	CmoCh03G014070	Cucurbita moschata (Rifu)	carcmoB0408
Carg19282	CmoCh18G004570	Cucurbita moschata (Rifu)	carcmoB0407
Carg19282	CmoCh07G000940	Cucurbita moschata (Rifu)	carcmoB0410
Carg19282	Lsi02G009060	Bottle gourd (USVL1VR-Ls)	carlsiB274
Carg19282	Lsi01G001330	Bottle gourd (USVL1VR-Ls)	carlsiB273
Carg19282	Cp4.1LG19g05900	Cucurbita pepo (Zucchini)	carcpeB0415
Carg19282	Cp4.1LG10g06230	Cucurbita pepo (Zucchini)	carcpeB0413
Carg19282	Cp4.1LG09g07500	Cucurbita pepo (Zucchini)	carcpeB0412
Carg19282	CsGy6G035770	Cucumber (Gy14) v2	carcgybB0312
Carg19282	MELO3C007121.2	Melon (DHL92) v3.6.1	carmedB0312
Carg19282	MELO3C002754.2	Melon (DHL92) v3.6.1	carmedB0311
Carg19282	CsaV3_6G051860	Cucumber (Chinese Long) v3	carcucB0332
Carg19282	Cla97C01G024700	Watermelon (97103) v2	carwmbB0307
Carg19282	Cla97C03G057940	Watermelon (97103) v2	carwmbB0309
Carg19282	Bhi03G000091	Wax gourd	carwgoB0385
Carg19282	Bhi08G001670	Wax gourd	carwgoB0386

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19282	Carg22548	Silver-seed gourd	carcarB327
Carg19282	Carg14997	Silver-seed gourd	carcarB328

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19282	Cucurbita maxima (Rimu)	carcmaB0411
Carg19282	Cucurbita moschata (Rifu)	carcmoB0406
Carg19282	Cucurbita pepo (Zucchini)	carcpeB0416