Carg19213 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19213
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Wound-responsive family protein
Location	Cucurbita_argyrosperma_scaffold_099 : 275853 .. 276131 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTACCTGAACAGAGTTGGAATGGCGGCGAGCGTGGCAGTGGCTCAAGGCCACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTCTTCGACAAGGTCGGAGACTTTTGTCTTCCGGTGAAAATCCGGCAGATCTCCGGCCTCTTTCCAGTTTAGTCGGATCGGAAGGTCCCGGAGCTGTCCGGAGCTTAGACGCCGACGAGAGGATGGCACAAACGGAGGATTCTCTCCGGCGAGTCATGTACTTGAACTGTTGGGGCCAGGGATGA

mRNA sequence

ATGAGTTACCTGAACAGAGTTGGAATGGCGGCGAGCGTGGCAGTGGCTCAAGGCCACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTCTTCGACAAGGTCGGAGACTTTTGTCTTCCGGTGAAAATCCGGCAGATCTCCGGCCTCTTTCCAGTTTAGTCGGATCGGAAGGTCCCGGAGCTGTCCGGAGCTTAGACGCCGACGAGAGGATGGCACAAACGGAGGATTCTCTCCGGCGAGTCATGTACTTGAACTGTTGGGGCCAGGGATGA

Coding sequence (CDS)

ATGAGTTACCTGAACAGAGTTGGAATGGCGGCGAGCGTGGCAGTGGCTCAAGGCCACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTCTTCGACAAGGTCGGAGACTTTTGTCTTCCGGTGAAAATCCGGCAGATCTCCGGCCTCTTTCCAGTTTAGTCGGATCGGAAGGTCCCGGAGCTGTCCGGAGCTTAGACGCCGACGAGAGGATGGCACAAACGGAGGATTCTCTCCGGCGAGTCATGTACTTGAACTGTTGGGGCCAGGGATGA

Protein sequence

MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEGPGAVRSLDADERMAQTEDSLRRVMYLNCWGQG

Homology

[Close]

BLAST of Carg19213 vs. NCBI nr
Match: KGN43581.1 (hypothetical protein Csa_7G046690 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 4.9e-40
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PGAVRSLDADERMAQTEDSLRRVMYLNCWGQG 93
           G+VRS D DER+AQ+EDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of Carg19213 vs. NCBI nr
Match: PLY83836.1 (hypothetical protein LSAT_3X40041 [Lactuca sativa])

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 55/91 (60.44%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV M A VAV  GHT+ GHK KSG+KS +QG++  +S  +PADLRPLS +V S+ 
Sbjct: 1  MSYLNRVWMTAGVAVVNGHTDQGHKLKSGIKSFQQGKKAFTSSTDPADLRPLSGVVSSDV 60

Query: 61 PGAVRSLDADERMAQTEDSLRRVMYLNCWGQ 92
           G V     +ERM Q++DSLR+VMYLNCWGQ
Sbjct: 61 GGFV---GGEERMKQSDDSLRQVMYLNCWGQ 88

[Close]

BLAST of Carg19213 vs. NCBI nr
Match: XP_020238544.1 (uncharacterized protein LOC109817636 [Cajanus cajan] >XP_020215110.1 uncharacterized protein LOC109799042 [Cajanus cajan] >KYP43466.1 hypothetical protein KK1_035112 [Cajanus cajan] >KYP68979.1 hypothetical protein KK1_022629 [Cajanus cajan])

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ GHK K+ L S+   R  L SG   +DLRPLS +VGS+ 
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGHKCKTALTSIHHNRSRLFSGGPLSDLRPLSGVVGSDV 60

Query: 61 PGAVR-SLDADERMAQTEDSLRRVMYLNCWGQG 93
           GAV  S D D R+ Q +DSLR+VMYL+CWGQG
Sbjct: 61 AGAVAGSSDVDNRVRQADDSLRKVMYLSCWGQG 93

[Close]

BLAST of Carg19213 vs. NCBI nr
Match: XP_017424955.1 (PREDICTED: uncharacterized protein LOC108333943 [Vigna angularis] >BAT92247.1 hypothetical protein VIGAN_07093200 [Vigna angularis var. angularis])

HSP 1 Score: 109.0 bits (271), Expect = 8.7e-21
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ G+K K+ L S+   R  L SG   +DLRPLS +VGS+G
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGYKCKTALNSIHHNRSRLFSGGALSDLRPLSGVVGSDG 60

Query: 61 PGAVR-SLDADERMAQTEDSLRRVMYLNCWGQG 93
           GAV  S D  +R+ Q ++SLR+VMYL+CWGQG
Sbjct: 61 AGAVAGSSDVQKRVTQADESLRKVMYLSCWGQG 93

[Close]

BLAST of Carg19213 vs. NCBI nr
Match: XP_016169946.1 (uncharacterized protein LOC107612740 [Arachis ipaensis] >XP_025673461.1 uncharacterized protein LOC112772702 [Arachis hypogaea])

HSP 1 Score: 109.0 bits (271), Expect = 8.7e-21
Identity = 56/94 (59.57%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ GHK K+ +KS+   R  L S  + +DLRPLS L+GS+ 
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGHKCKTAVKSIHNNRTRLFSAGSLSDLRPLSGLMGSDV 60

Query: 61 PGAV--RSLDADERMAQTEDSLRRVMYLNCWGQG 93
           GA       AD+R  QT+DSLR+VMYL+CWGQG
Sbjct: 61 AGAATGNGSSADDRRGQTDDSLRKVMYLSCWGQG 94

[Close]

BLAST of Carg19213 vs. TAIR10
Match: AT4G28240.1 (Wound-responsive family protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-12
Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSS--LVGS 60
          MSYLN+V MAAS    QG+ + G K KSGL S  + +R LSS     DLRPL++  L G 
Sbjct: 1  MSYLNKVWMAASFVAVQGNADHGVKLKSGLTSAHRLQRRLSS-----DLRPLAAADLTGD 60

Query: 61 EGPGAVRSLDADERMAQTEDSLRRVMYLNCWGQG 93
            P   R   +    +  ++SLR+VMYLNCW QG
Sbjct: 61 SLPSEERRRTSS---STPDESLRQVMYLNCWAQG 86

[Close]

BLAST of Carg19213 vs. TrEMBL
Match: tr|A0A0A0K6Z3|A0A0A0K6Z3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.2e-40
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PGAVRSLDADERMAQTEDSLRRVMYLNCWGQG 93
           G+VRS D DER+AQ+EDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of Carg19213 vs. TrEMBL
Match: tr|A0A2N9HZV9|A0A2N9HZV9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.6e-23
Identity = 56/92 (60.87%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA VAV QG T+ GHKWKSG+KS++  ++ L SG + +DLRPLS ++GS+ 
Sbjct: 1  MSYLNRVWMAAGVAVVQGKTDQGHKWKSGIKSVQLRKQKLFSGNDTSDLRPLSGMIGSDF 60

Query: 61 PGAVRSLDADERMAQTEDSLRRVMYLNCWGQG 93
           G + + DADER    ++SLRRVMYLNCWGQG
Sbjct: 61 QGFLGNSDADERPMHADESLRRVMYLNCWGQG 92

[Close]

BLAST of Carg19213 vs. TrEMBL
Match: tr|A0A2J6L919|A0A2J6L919_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_3X40041 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 55/91 (60.44%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV M A VAV  GHT+ GHK KSG+KS +QG++  +S  +PADLRPLS +V S+ 
Sbjct: 1  MSYLNRVWMTAGVAVVNGHTDQGHKLKSGIKSFQQGKKAFTSSTDPADLRPLSGVVSSDV 60

Query: 61 PGAVRSLDADERMAQTEDSLRRVMYLNCWGQ 92
           G V     +ERM Q++DSLR+VMYLNCWGQ
Sbjct: 61 GGFV---GGEERMKQSDDSLRQVMYLNCWGQ 88

[Close]

BLAST of Carg19213 vs. TrEMBL
Match: tr|A0A151RLL3|A0A151RLL3_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_022629 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-21
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ GHK K+ L S+   R  L SG   +DLRPLS +VGS+ 
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGHKCKTALTSIHHNRSRLFSGGPLSDLRPLSGVVGSDV 60

Query: 61 PGAVR-SLDADERMAQTEDSLRRVMYLNCWGQG 93
           GAV  S D D R+ Q +DSLR+VMYL+CWGQG
Sbjct: 61 AGAVAGSSDVDNRVRQADDSLRKVMYLSCWGQG 93

[Close]

BLAST of Carg19213 vs. TrEMBL
Match: tr|A0A0S3SHH3|A0A0S3SHH3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G093200 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.8e-21
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ G+K K+ L S+   R  L SG   +DLRPLS +VGS+G
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGYKCKTALNSIHHNRSRLFSGGALSDLRPLSGVVGSDG 60

Query: 61 PGAVR-SLDADERMAQTEDSLRRVMYLNCWGQG 93
           GAV  S D  +R+ Q ++SLR+VMYL+CWGQG
Sbjct: 61 AGAVAGSSDVQKRVTQADESLRKVMYLSCWGQG 93

The following BLAST results are available for this feature:

BLAST of Carg19213 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43581.1	4.9e-40	92.39	hypothetical protein Csa_7G046690 [Cucumis sativus]	[more]
PLY83836.1	2.3e-21	60.44	hypothetical protein LSAT_3X40041 [Lactuca sativa]	[more]
XP_020238544.1	3.0e-21	62.37	uncharacterized protein LOC109817636 [Cajanus cajan] >XP_020215110.1 uncharacter...	[more]
XP_017424955.1	8.7e-21	60.22	PREDICTED: uncharacterized protein LOC108333943 [Vigna angularis] >BAT92247.1 hy...	[more]
XP_016169946.1	8.7e-21	59.57	uncharacterized protein LOC107612740 [Arachis ipaensis] >XP_025673461.1 uncharac...	[more]

BLAST of Carg19213 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28240.1	1.4e-12	46.81	Wound-responsive family protein	[more]

BLAST of Carg19213 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19213 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6Z3\|A0A0A0K6Z3_CUCSA	3.2e-40	92.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1	[more]
tr\|A0A2N9HZV9\|A0A2N9HZV9_FAGSY	1.6e-23	60.87	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1	[more]
tr\|A0A2J6L919\|A0A2J6L919_LACSA	1.5e-21	60.44	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_3X40041 PE=4 SV=1	[more]
tr\|A0A151RLL3\|A0A151RLL3_CAJCA	2.0e-21	62.37	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_022629 PE=4 SV=1	[more]
tr\|A0A0S3SHH3\|A0A0S3SHH3_PHAAN	5.8e-21	60.22	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19213-RA	Carg19213-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 9..91 e-value: 6.9E-16 score: 58.9
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 1..92
None	No IPR available	PANTHER	PTHR33090:SF1	SUBFAMILY NOT NAMED	coord: 1..92

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19213	Carg13562	Silver-seed gourd	carcarB036
Carg19213	Carg19100	Silver-seed gourd	carcarB590

The following block(s) are covering this gene:

None