Carg19211 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19211
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Wound-responsive family protein
Location	Cucurbita_argyrosperma_scaffold_099 : 272718 .. 272975 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGTCGAGAAGAGCTTGGGTTGTAGCGGCCAGTGTCGGAGTGGTGGAGGCCTTAAAAGATCAAGGGGTTTGCCGGTGGAATCATACGATTAAATCGGTTCAGCAGTACGCCAAAAACCACGTTAGATCGGTTTCTCAGGCGAAGAAGCTTTCTTCTCCGTCGACTGCGGCGGTTTCCGATCAGAAATGGAAGCAGTCGGAGGAGTCTTTGAGGACTGTCATGTACTTGAGCTGTTGGGGGCCCAATAACTGA

mRNA sequence

ATGAGTTCGTCGAGAAGAGCTTGGGTTGTAGCGGCCAGTGTCGGAGTGGTGGAGGCCTTAAAAGATCAAGGGGTTTGCCGGTGGAATCATACGATTAAATCGGTTCAGCAGTACGCCAAAAACCACGTTAGATCGGTTTCTCAGGCGAAGAAGCTTTCTTCTCCGTCGACTGCGGCGGTTTCCGATCAGAAATGGAAGCAGTCGGAGGAGTCTTTGAGGACTGTCATGTACTTGAGCTGTTGGGGGCCCAATAACTGA

Coding sequence (CDS)

ATGAGTTCGTCGAGAAGAGCTTGGGTTGTAGCGGCCAGTGTCGGAGTGGTGGAGGCCTTAAAAGATCAAGGGGTTTGCCGGTGGAATCATACGATTAAATCGGTTCAGCAGTACGCCAAAAACCACGTTAGATCGGTTTCTCAGGCGAAGAAGCTTTCTTCTCCGTCGACTGCGGCGGTTTCCGATCAGAAATGGAAGCAGTCGGAGGAGTCTTTGAGGACTGTCATGTACTTGAGCTGTTGGGGGCCCAATAACTGA

Protein sequence

MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAVSDQKWKQSEESLRTVMYLSCWGPNN

Homology

[Close]

BLAST of Carg19211 vs. NCBI nr
Match: XP_023554652.1 (uncharacterized protein LOC111811840 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60
          MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SDQKWKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of Carg19211 vs. NCBI nr
Match: XP_022952158.1 (uncharacterized protein LOC111454919 [Cucurbita moschata])

HSP 1 Score: 169.9 bits (429), Expect = 3.8e-39
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60
          MSSSRRAWVVAASVGVVEALKDQGVCRWNH IKSVQQYAKNHVRSVSQAKKLSSPSTAAV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHAIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SDQKWKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of Carg19211 vs. NCBI nr
Match: XP_022969311.1 (uncharacterized protein LOC111468355 [Cucurbita maxima])

HSP 1 Score: 168.7 bits (426), Expect = 8.5e-39
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60
          MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSS STAAV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SDQKWKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of Carg19211 vs. NCBI nr
Match: XP_008455355.1 (PREDICTED: uncharacterized protein LOC103495542 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 2.0e-35
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60
          MS SR+ WVVAASVGVVEALKDQG+CRWNHTI+S+QQYAKNHVRS+SQAKKLSSPS A V
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAATV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SD +WKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHRWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of Carg19211 vs. NCBI nr
Match: XP_023531405.1 (uncharacterized protein LOC111793656 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.5 bits (397), Expect = 2.0e-35
Identity = 76/85 (89.41%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60
          MSSSR AWVVAASVGVVEALKDQGVCRWNHTI+SVQQYAK+H RS SQ KKLSSPS+AAV
Sbjct: 8  MSSSRTAWVVAASVGVVEALKDQGVCRWNHTIRSVQQYAKSHARSASQVKKLSSPSSAAV 67

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SDQKWKQS+ESLRTVM+LSCWGPNN
Sbjct: 68 SDQKWKQSQESLRTVMFLSCWGPNN 92

[Close]

BLAST of Carg19211 vs. TAIR10
Match: AT4G10265.1 (Wound-responsive family protein)

HSP 1 Score: 109.8 bits (273), Expect = 8.5e-25
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQ-GVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAA 60
          MSS+ + W+VAAS+G VEALKDQ GVCRWN+ I+S  QY +N++RSVSQAKKLSS S   
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query: 61 VSDQKWKQSEESLRTVMYLSCWGPN 85
           +  K KQ+EESLRTVMYLSCWGP+
Sbjct: 61 TN--KTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of Carg19211 vs. TAIR10
Match: AT4G10270.1 (Wound-responsive family protein)

HSP 1 Score: 106.7 bits (265), Expect = 7.2e-24
Identity = 54/90 (60.00%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQ-GVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAA 60
          MSS+ +AW VA S+G VEALKDQ G+CRWN+ ++SV Q+ +N+VRSVSQ K+ SS S +A
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 V-----SDQKWKQSEESLRTVMYLSCWGPN 85
                  +K K++EESLRTVMYLSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of Carg19211 vs. TAIR10
Match: AT4G33560.1 (Wound-responsive family protein)

HSP 1 Score: 51.6 bits (122), Expect = 2.8e-07
Identity = 31/88 (35.23%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 2  SSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSP--STAA 61
          +  + +W VA ++  VE LKDQGV RWN+  + + + A   VR+++   + S P  S++A
Sbjct: 3  AGKQASWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSA 62

Query: 62 VSDQKWKQS----EESLRTVMYLSCWGP 84
           S +    S    E S    M LSC+GP
Sbjct: 63 TSIRSKPLSTTPFETSFEKAMGLSCFGP 90

[Close]

BLAST of Carg19211 vs. TrEMBL
Match: tr|A0A1S3C0Q4|A0A1S3C0Q4_CUCME (uncharacterized protein LOC103495542 OS=Cucumis melo OX=3656 GN=LOC103495542 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-35
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60
          MS SR+ WVVAASVGVVEALKDQG+CRWNHTI+S+QQYAKNHVRS+SQAKKLSSPS A V
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAATV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SD +WKQSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHRWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of Carg19211 vs. TrEMBL
Match: tr|A0A0A0K3P5|A0A0A0K3P5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046670 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.9e-35
Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60
          MS  R+ WVVAASVGVVEALKDQG+CRWNHTI+S+QQYAKNHVRS+SQAKKLSSPS AAV
Sbjct: 1  MSCCRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SDQKWKQSEESLRTVMYLSCWGPNN 86
          SD KW QSEESLRTVMYLSCWGPNN
Sbjct: 61 SDHKWNQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of Carg19211 vs. TrEMBL
Match: tr|A0A0D2PKH2|A0A0D2PKH2_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G206000 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-28
Identity = 66/86 (76.74%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60
          MSS+ RAWVVAAS+G VEALKDQG+CRWN+T++SV Q+AKNHVRS SQAK LSS S+AA+
Sbjct: 1  MSSTSRAWVVAASIGAVEALKDQGICRWNYTVRSVVQHAKNHVRSASQAKNLSSQSSAAI 60

Query: 61 SD--QKWKQSEESLRTVMYLSCWGPN 85
          S    K+KQSEESLRTVMYLSCWGPN
Sbjct: 61 SKGLNKYKQSEESLRTVMYLSCWGPN 86

[Close]

BLAST of Carg19211 vs. TrEMBL
Match: tr|A0A1S3C1F8|A0A1S3C1F8_CUCME (uncharacterized protein LOC103495543 OS=Cucumis melo OX=3656 GN=LOC103495543 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.6e-28
Identity = 66/85 (77.65%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60
          MSSSRRAW+VAASVGVVEALKDQG+CRWNHTI+S  QYA+NHVRSV QA +L+  S A V
Sbjct: 1  MSSSRRAWIVAASVGVVEALKDQGICRWNHTIRSAHQYARNHVRSVPQATRLTGSSAAVV 60

Query: 61 SDQ-KWKQSEESLRTVMYLSCWGPN 85
          S + + KQSEESLRTVMYLSCWGPN
Sbjct: 61 SSKPQQKQSEESLRTVMYLSCWGPN 85

[Close]

BLAST of Carg19211 vs. TrEMBL
Match: tr|A0A0D2N5Q5|A0A0D2N5Q5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G205900 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.5e-28
Identity = 66/86 (76.74%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60
          MSSS RAW+VAAS+G VEALKDQG+CRWN+T++SV Q+AKNHVRS SQAK LSS S+AA+
Sbjct: 1  MSSSSRAWIVAASIGAVEALKDQGICRWNYTVRSVVQHAKNHVRSASQAKNLSSQSSAAI 60

Query: 61 SD--QKWKQSEESLRTVMYLSCWGPN 85
          S    K KQSEESLRTVMYLSCWGPN
Sbjct: 61 SKGLNKSKQSEESLRTVMYLSCWGPN 86

The following BLAST results are available for this feature:

BLAST of Carg19211 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554652.1	1.0e-39	100.00	uncharacterized protein LOC111811840 [Cucurbita pepo subsp. pepo]	[more]
XP_022952158.1	3.8e-39	98.82	uncharacterized protein LOC111454919 [Cucurbita moschata]	[more]
XP_022969311.1	8.5e-39	98.82	uncharacterized protein LOC111468355 [Cucurbita maxima]	[more]
XP_008455355.1	2.0e-35	87.06	PREDICTED: uncharacterized protein LOC103495542 [Cucumis melo]	[more]
XP_023531405.1	2.0e-35	89.41	uncharacterized protein LOC111793656 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg19211 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10265.1	8.5e-25	67.06	Wound-responsive family protein	[more]
AT4G10270.1	7.2e-24	60.00	Wound-responsive family protein	[more]
AT4G33560.1	2.8e-07	35.23	Wound-responsive family protein	[more]

BLAST of Carg19211 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19211 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0Q4\|A0A1S3C0Q4_CUCME	1.3e-35	87.06	uncharacterized protein LOC103495542 OS=Cucumis melo OX=3656 GN=LOC103495542 PE=...	[more]
tr\|A0A0A0K3P5\|A0A0A0K3P5_CUCSA	2.9e-35	87.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046670 PE=4 SV=1	[more]
tr\|A0A0D2PKH2\|A0A0D2PKH2_GOSRA	2.0e-28	76.74	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G206000 PE=4 ...	[more]
tr\|A0A1S3C1F8\|A0A1S3C1F8_CUCME	2.6e-28	77.65	uncharacterized protein LOC103495543 OS=Cucumis melo OX=3656 GN=LOC103495543 PE=...	[more]
tr\|A0A0D2N5Q5\|A0A0D2N5Q5_GOSRA	4.5e-28	76.74	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G205900 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19211-RA	Carg19211-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..83 e-value: 1.3E-33 score: 115.7
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 1..84
None	No IPR available	PANTHER	PTHR33090:SF8	SUBFAMILY NOT NAMED	coord: 1..84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19211	MELO3C018766	Melon (DHL92) v3.5.1	carmeB0865
Carg19211	Cucsa.147980	Cucumber (Gy14) v1	carcgyB0997
Carg19211	MELO3C018766.2	Melon (DHL92) v3.6.1	carmedB0874

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19211	Wax gourd	carwgoB1021
Carg19211	Wax gourd	carwgoB1025
Carg19211	Wax gourd	carwgoB1026
Carg19211	Cucurbita pepo (Zucchini)	carcpeB1219
Carg19211	Silver-seed gourd	carcarB036
Carg19211	Silver-seed gourd	carcarB178
Carg19211	Silver-seed gourd	carcarB364
Carg19211	Silver-seed gourd	carcarB562
Carg19211	Silver-seed gourd	carcarB590
Carg19211	Silver-seed gourd	carcarB637
Carg19211	Cucumber (Gy14) v2	carcgybB0863
Carg19211	Cucumber (Gy14) v2	carcgybB0864
Carg19211	Cucumber (Gy14) v1	carcgyB0995
Carg19211	Cucurbita maxima (Rimu)	carcmaB1211
Carg19211	Cucurbita maxima (Rimu)	carcmaB1213
Carg19211	Cucurbita maxima (Rimu)	carcmaB1214
Carg19211	Cucurbita maxima (Rimu)	carcmaB1216
Carg19211	Cucurbita maxima (Rimu)	carcmaB1217
Carg19211	Cucurbita maxima (Rimu)	carcmaB1218
Carg19211	Cucurbita moschata (Rifu)	carcmoB1179
Carg19211	Cucurbita moschata (Rifu)	carcmoB1181
Carg19211	Cucurbita moschata (Rifu)	carcmoB1182
Carg19211	Cucurbita moschata (Rifu)	carcmoB1183
Carg19211	Cucurbita moschata (Rifu)	carcmoB1184
Carg19211	Cucurbita moschata (Rifu)	carcmoB1185
Carg19211	Cucurbita moschata (Rifu)	carcmoB1186
Carg19211	Cucurbita moschata (Rifu)	carcmoB1187
Carg19211	Cucurbita pepo (Zucchini)	carcpeB1218
Carg19211	Cucurbita pepo (Zucchini)	carcpeB1220
Carg19211	Cucurbita pepo (Zucchini)	carcpeB1222
Carg19211	Cucurbita pepo (Zucchini)	carcpeB1223
Carg19211	Cucurbita pepo (Zucchini)	carcpeB1225
Carg19211	Wild cucumber (PI 183967)	carcpiB0908
Carg19211	Wild cucumber (PI 183967)	carcpiB0910
Carg19211	Wild cucumber (PI 183967)	carcpiB0911
Carg19211	Cucumber (Chinese Long) v2	carcuB0888
Carg19211	Cucumber (Chinese Long) v2	carcuB0890
Carg19211	Cucumber (Chinese Long) v2	carcuB0891
Carg19211	Cucumber (Chinese Long) v3	carcucB0912
Carg19211	Cucumber (Chinese Long) v3	carcucB0914
Carg19211	Cucumber (Chinese Long) v3	carcucB0915
Carg19211	Bottle gourd (USVL1VR-Ls)	carlsiB794
Carg19211	Bottle gourd (USVL1VR-Ls)	carlsiB795
Carg19211	Bottle gourd (USVL1VR-Ls)	carlsiB797
Carg19211	Bottle gourd (USVL1VR-Ls)	carlsiB798
Carg19211	Melon (DHL92) v3.5.1	carmeB0866
Carg19211	Melon (DHL92) v3.6.1	carmedB0875
Carg19211	Watermelon (Charleston Gray)	carwcgB0849
Carg19211	Watermelon (Charleston Gray)	carwcgB0851
Carg19211	Watermelon (Charleston Gray)	carwcgB0853
Carg19211	Watermelon (97103) v1	carwmB0876
Carg19211	Watermelon (97103) v1	carwmB0879
Carg19211	Watermelon (97103) v1	carwmB0880
Carg19211	Watermelon (97103) v2	carwmbB0912
Carg19211	Watermelon (97103) v2	carwmbB0915