Carg19078 (gene) Silver-seed gourd

Overview
NameCarg19078
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein translation factor SUI1 homolog
LocationCucurbita_argyrosperma_scaffold_112 : 77826 .. 80340 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAAGGTTTGTGTGGCTTTCCAAATTTCTCTCTTATATATAATCCTCATTTTGACTTCCAGCCATTCAGTTTCACGTCTCTTCGCTCCGGATTCACACCTTTTTCTCCTGGTAAATTCTTGTTCATCGCTCTCTCCTTCATTTCATCTATGAAAGAAACCAATCCAATGTTTTTCATTTCTGTCCTTATTTTTTTTGTTTGGGTTTTTTTTCGTTTTTTTTTCACCCAAGGGTTCCTGTGCTTTTTTTCCCCAAAAATTCCATTTGTTTGTGGTTAGCGTTTTTTTTATATATATTTTTTTTTTGTTCTTTTTTTTAGCATGATCGAAGCACCAACACTAATCAGAGCTTACTTTCTGGGATTTTTCTGAGATGTAAGTGTTTTGATGTTTCTTAATCGAACCTTATACCTGGTTTGATTGTTATTGAGTGGCTTCTGTTTCTTTTAATATTTAATTTATGCACATTATTTTGATCCTCAATTTGGTTCTTCTGTCTGATAGGTTGCTTATGATTGTGTGTGTTTGGGTGTTTTTCTGTATTCTTAGCGAGATATTGGTAGAATTATTACCTTCTAATTTAGGTTGCGAAGACATGATTGGTTATCGGGTTCTTTTAATTGTTTGATCCCTTATAGAGCTTAAATTTCTTCAATTTGTTACCGTGGATTTGTAGAAAATTCATAAGTAGTGTAGTGAAAGTCTATCAACTTTGCTTTTATTGTTCATAACCTATGTTTTAATCTGCTAAGTTTTGGTTTCTGTTACTTTTATGATTGAGGTTTTGAATTGTTGAGTGTATGCGCTTTTGATCTTTGACAAAGAAGTCTGTATGGGCTGTGGGGATCGGGAGGATCAAAAATTGAAAACAGGACTTGGAGATATATGTAGATCATGGGTGGATCATATTGGTGCTTCGGTGTCTGCGGTTTCATTTCTGTTTCTTTTGTCTTTTGCAGTTTTGAGCGGCTTAATTGAGAGCGCATAATTTTTTTGCTGGTTACCTGTGTTCTACTACGGACAGCCAAGTTTCATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGGTAACGTCACAACTCCCTGTTCTTGGTTTTTACTTTTTAGTAAGTTTCATCGGTTGGTTTGATAATTTATTAATTGTATTTGATGGTCAGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTTCAAGGATTGAAGAAGGAATTTAGTTATAACAAAATACTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTCCGGTCTCCATCTCCCTCCTTAAAATGATTTGTATTTATGCACCTAACATAAAAACTAAAAGAGACTAATAGTTTTCGATTTTGGATAATGTGGAGAGAAGGGTCATGTTGGGGTTAGTGTTAGAACTTAGAACAAATGGGGGAGCAAGAATAATGGTAAAAACAAACGAATCCAGGGCTCCCCAAACTAAGATAACCGAACGGGGTCCATTAGGCTTCTCCGAACAGACAATACAAACTTGCTTACTCTACCTCACTTGTCTTTCCTCGTGTATGTTAAGTGTCACAATCACACTTTGCTATGCCTATTTGCTTAGAGAAGGTATAGCATGACTGCGTGCGAATAGGCATAGCATACACGAGGGCAAACCAATATTGGTGGTTTGCTATGCCATCACGAACAAGAATTCTGAAGGTGTTATTAGCACTGCTACATATTGTGCGGTAATAGGATTTTGTCTCTTTTCATCTTTTCATTGAAAAGTTGGTTTCTTGCTTTTTAAAGAACACAATGGTAGGAACGCTTAGATGCATATACTTTTCTTTTTGCGGGGAAAATAAAAGTATCATCCCACTCCACAATCAATGACATCACTTGTAATGGAGTAGCTTTCTTTTATCAAATCTACTTGTTTTCCTTCCTCTTTCATTTGAATTTCCAAATCAGGTCCCGGCTACATGTCCTTTGGACTCTTTGCTTAGAAGTGGATTCGAACAACTGTGTGACAAGTATTTTCACTTTATGCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGTAATGAATGATTGAATATTATATAGTTGAGATGAGAGTGAATGATTGAGTATTATATATTGGTTCTCTTTTGTTTCCGCATTGTGATGATAGGCTGGGATTGTGAAGAAGGAAAATATAAAGATTCACGGTTTCTAAAGAGCTTCAAGGTTGAGAATTCTATTACTGTTTACAGCAGCTTAACTGACAGTAGTGGACATAATATATATATATATATATATATATATATATATATATATGATAGAACTACGTTTAGAAGTTGTGAGTGCATGTTACAACTCTGGATGCTTTGGTTTGTTGTTATGCAGACAGACCAAGTCATGGATTATTGTTATCATTATCATTA

mRNA sequence

TAGAAGGTTTGTGTGGCTTTCCAAATTTCTCTCTTATATATAATCCTCATTTTGACTTCCAGCCATTCAGTTTCACGTCTCTTCGCTCCGGATTCACACCTTTTTCTCCTGTTTTGAGCGGCTTAATTGAGAGCGCATAATTTTTTTGCTGGTTACCTGTGTTCTACTACGGACAGCCAAGTTTCATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTTCAAGGATTGAAGAAGGAATTTAGTTATAACAAAATACTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGGATTGTGAAGAAGGAAAATATAAAGATTCACGGTTTCTAAAGAGCTTCAAGGTTGAGAATTCTATTACTGTTTACAGCAGCTTAACTGACAGTAGTGGACATAATATAACTACGTTTAGAAGTTGTGAGTGCATGTTACAACTCTGGATGCTTTGGTTTGTTGTTATGCAGACAGACCAAGTCATGGATTATTGTTATCATTATCATTA

Coding sequence (CDS)

ATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTTCAAGGATTGAAGAAGGAATTTAGTTATAACAAAATACTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGGATTGTGAAGAAGGAAAATATAAAGATTCACGGTTTCTAA

Protein sequence

MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Homology
[Close]
BLAST of Carg19078 vs. NCBI nr
Match: XP_004144489.1 (PREDICTED: protein translation factor SUI1 homolog [Cucumis sativus] >XP_008455418.1 PREDICTED: protein translation factor SUI1 homolog [Cucumis melo] >XP_008455419.1 PREDICTED: protein translation factor SUI1 homolog [Cucumis melo] >XP_011658706.1 PREDICTED: protein translation factor SUI1 homolog [Cucumis sativus] >XP_022135675.1 protein translation factor SUI1 homolog [Momordica charantia] >XP_022135676.1 protein translation factor SUI1 homolog [Momordica charantia] >XP_022135677.1 protein translation factor SUI1 homolog [Momordica charantia] >XP_022135678.1 protein translation factor SUI1 homolog [Momordica charantia] >XP_022952138.1 protein translation factor SUI1 homolog [Cucurbita moschata] >XP_022930780.1 protein translation factor SUI1 homolog [Cucurbita moschata] >XP_022989018.1 protein translation factor SUI1 homolog [Cucurbita maxima] >XP_022969300.1 protein translation factor SUI1 homolog [Cucurbita maxima] >XP_023530208.1 protein translation factor SUI1 homolog [Cucurbita pepo subsp. pepo] >XP_023554643.1 protein translation factor SUI1 homolog [Cucurbita pepo subsp. pepo] >KGN43535.1 hypothetical protein Csa_7G044260 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of Carg19078 vs. NCBI nr
Match: XP_022989016.1 (protein translation factor SUI1 homolog [Cucurbita maxima] >XP_022989017.1 protein translation factor SUI1 homolog [Cucurbita maxima] >XP_023530206.1 protein translation factor SUI1 homolog [Cucurbita pepo subsp. pepo] >XP_023530207.1 protein translation factor SUI1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 227.3 bits (578), Expect = 2.7e-56
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAG+KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of Carg19078 vs. NCBI nr
Match: XP_022952139.1 (protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022952140.1 protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022952141.1 protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022952142.1 protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022969301.1 protein translation factor SUI1 homolog 2-like [Cucurbita maxima] >XP_022969302.1 protein translation factor SUI1 homolog 2-like [Cucurbita maxima] >XP_023554644.1 protein translation factor SUI1 homolog 2-like [Cucurbita pepo subsp. pepo] >XP_023554645.1 protein translation factor SUI1 homolog 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.9 bits (577), Expect = 3.5e-56
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAG KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGGKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of Carg19078 vs. NCBI nr
Match: XP_022930779.1 (protein translation factor SUI1 homolog [Cucurbita moschata])

HSP 1 Score: 224.6 bits (571), Expect = 1.7e-55
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFN QIPSAFDPFADANAEDSGAG+KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNGQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of Carg19078 vs. NCBI nr
Match: XP_012434403.1 (PREDICTED: protein translation factor SUI1 homolog 2-like [Gossypium raimondii] >XP_012434404.1 PREDICTED: protein translation factor SUI1 homolog 2-like [Gossypium raimondii] >XP_012462383.1 PREDICTED: protein translation factor SUI1 homolog 2-like [Gossypium raimondii] >XP_016728730.1 PREDICTED: protein translation factor SUI1 homolog 2-like [Gossypium hirsutum] >XP_016730248.1 PREDICTED: protein translation factor SUI1 homolog 2-like [Gossypium hirsutum] >XP_016730249.1 PREDICTED: protein translation factor SUI1 homolog 2-like [Gossypium hirsutum] >XP_016675941.1 PREDICTED: protein translation factor SUI1 homolog 2-like [Gossypium hirsutum] >XP_016705954.1 PREDICTED: protein translation factor SUI1 homolog 2-like [Gossypium hirsutum] >XP_017616466.1 PREDICTED: protein translation factor SUI1 homolog 2-like [Gossypium arboreum] >XP_017629438.1 PREDICTED: protein translation factor SUI1 homolog 2-like [Gossypium arboreum] >XP_022753170.1 protein translation factor SUI1 homolog 2 [Durio zibethinus] >KHG23747.1 hypothetical protein F383_10557 [Gossypium arboreum] >KJB45588.1 hypothetical protein B456_007G314200 [Gossypium raimondii] >KJB45589.1 hypothetical protein B456_007G314200 [Gossypium raimondii] >KJB45590.1 hypothetical protein B456_007G314200 [Gossypium raimondii] >KJB78391.1 hypothetical protein B456_013G163400 [Gossypium raimondii] >PPD91921.1 hypothetical protein GOBAR_DD11153 [Gossypium barbadense] >PPS15121.1 hypothetical protein GOBAR_AA05444 [Gossypium barbadense])

HSP 1 Score: 221.5 bits (563), Expect = 1.5e-54
Identity = 108/113 (95.58%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+ +VQIP+AFDPFADANAEDSGAGAKEYVH+RIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSDLDVQIPTAFDPFADANAEDSGAGAKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of Carg19078 vs. TAIR10
Match: AT1G54290.1 (Translation initiation factor SUI1 family protein)

HSP 1 Score: 210.7 bits (535), Expect = 4.7e-55
Identity = 100/113 (88.50%), Postives = 109/113 (96.46%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+  VQ+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY+KIL
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of Carg19078 vs. TAIR10
Match: AT4G27130.1 (Translation initiation factor SUI1 family protein)

HSP 1 Score: 209.5 bits (532), Expect = 1.1e-54
Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of Carg19078 vs. TAIR10
Match: AT5G54760.1 (Translation initiation factor SUI1 family protein)

HSP 1 Score: 208.0 bits (528), Expect = 3.1e-54
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADAN EDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of Carg19078 vs. TAIR10
Match: AT5G54940.1 (Translation initiation factor SUI1 family protein)

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-43
Identity = 83/113 (73.45%), Postives = 97/113 (85.84%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           M E ++QIPSA+DPFA+A   D+  GAKE +H+RIQQRNG+KSLTTVQGLKKE+SY +IL
Sbjct: 1   MVELDIQIPSAYDPFAEAKDSDA-PGAKENIHIRIQQRNGKKSLTTVQGLKKEYSYERIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKK+FCCNG VVQD ELG++IQLQGDQRK VS FLVQ GI KK+ IKIHGF
Sbjct: 61  KDLKKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112

[Close]
BLAST of Carg19078 vs. Swiss-Prot
Match: sp|O48650|SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko OX=72444 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 3.8e-54
Identity = 102/113 (90.27%), Postives = 110/113 (97.35%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEF+  IP+AFDPFA+ANAEDSGAG K+YVHVR+QQRNGRKSLTTVQGLKK++SYNKIL
Sbjct: 1   MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of Carg19078 vs. Swiss-Prot
Match: sp|Q94JV4|SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g54290 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 8.5e-54
Identity = 100/113 (88.50%), Postives = 109/113 (96.46%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+  VQ+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY+KIL
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of Carg19078 vs. Swiss-Prot
Match: sp|P41568|SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4g27130 PE=1 SV=2)

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-53
Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of Carg19078 vs. Swiss-Prot
Match: sp|Q9SQF4|SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea OX=3712 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-52
Identity = 98/113 (86.73%), Postives = 108/113 (95.58%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++I+IHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113

[Close]
BLAST of Carg19078 vs. Swiss-Prot
Match: sp|A6MZM2|SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=GOS2 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-52
Identity = 102/115 (88.70%), Postives = 110/115 (95.65%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSG--AGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60
           MS+ ++QIP+AFDPFA+ANA DSG  AG+K+YVHVRIQQRNGRKSLTTVQGLKKEFSYNK
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKE+IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

[Close]
BLAST of Carg19078 vs. TrEMBL
Match: tr|A0A1S3C0V7|A0A1S3C0V7_CUCME (protein translation factor SUI1 homolog OS=Cucumis melo OX=3656 GN=LOC103495584 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 8.0e-57
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of Carg19078 vs. TrEMBL
Match: tr|A0A0A0K1M6|A0A0A0K1M6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044260 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 8.0e-57
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of Carg19078 vs. TrEMBL
Match: tr|A0A1U8ICK8|A0A1U8ICK8_GOSHI (protein translation factor SUI1 homolog 2-like OS=Gossypium hirsutum OX=3635 GN=LOC107895192 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 9.8e-55
Identity = 108/113 (95.58%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+ +VQIP+AFDPFADANAEDSGAGAKEYVH+RIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSDLDVQIPTAFDPFADANAEDSGAGAKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of Carg19078 vs. TrEMBL
Match: tr|A0A2P5RYP5|A0A2P5RYP5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA05444 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 9.8e-55
Identity = 108/113 (95.58%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+ +VQIP+AFDPFADANAEDSGAGAKEYVH+RIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSDLDVQIPTAFDPFADANAEDSGAGAKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of Carg19078 vs. TrEMBL
Match: tr|A0A0D2V773|A0A0D2V773_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G314200 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 9.8e-55
Identity = 108/113 (95.58%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+ +VQIP+AFDPFADANAEDSGAGAKEYVH+RIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSDLDVQIPTAFDPFADANAEDSGAGAKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

The following BLAST results are available for this feature:
BLAST of Carg19078 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144489.11.2e-56100.00PREDICTED: protein translation factor SUI1 homolog [Cucumis sativus] >XP_0084554... [more]
XP_022989016.12.7e-5699.12protein translation factor SUI1 homolog [Cucurbita maxima] >XP_022989017.1 prote... [more]
XP_022952139.13.5e-5699.12protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_02295214... [more]
XP_022930779.11.7e-5598.23protein translation factor SUI1 homolog [Cucurbita moschata][more]
XP_012434403.11.5e-5495.58PREDICTED: protein translation factor SUI1 homolog 2-like [Gossypium raimondii] ... [more]
BLAST of Carg19078 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G54290.14.7e-5588.50Translation initiation factor SUI1 family protein[more]
AT4G27130.11.1e-5488.50Translation initiation factor SUI1 family protein[more]
AT5G54760.13.1e-5487.61Translation initiation factor SUI1 family protein[more]
AT5G54940.11.1e-4373.45Translation initiation factor SUI1 family protein[more]
BLAST of Carg19078 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O48650|SUI1_SALBA3.8e-5490.27Protein translation factor SUI1 homolog OS=Salix bakko OX=72444 PE=3 SV=1[more]
sp|Q94JV4|SUI12_ARATH8.5e-5488.50Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
sp|P41568|SUI11_ARATH1.9e-5388.50Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4... [more]
sp|Q9SQF4|SUI1_BRAOL2.1e-5286.73Protein translation factor SUI1 homolog OS=Brassica oleracea OX=3712 PE=3 SV=1[more]
sp|A6MZM2|SUI1_ORYSI2.1e-5288.70Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 G... [more]
BLAST of Carg19078 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C0V7|A0A1S3C0V7_CUCME8.0e-57100.00protein translation factor SUI1 homolog OS=Cucumis melo OX=3656 GN=LOC103495584 ... [more]
tr|A0A0A0K1M6|A0A0A0K1M6_CUCSA8.0e-57100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044260 PE=4 SV=1[more]
tr|A0A1U8ICK8|A0A1U8ICK8_GOSHI9.8e-5595.58protein translation factor SUI1 homolog 2-like OS=Gossypium hirsutum OX=3635 GN=... [more]
tr|A0A2P5RYP5|A0A2P5RYP5_GOSBA9.8e-5595.58Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA05444 PE=4 SV... [more]
tr|A0A0D2V773|A0A0D2V773_GOSRA9.8e-5595.58Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G314200 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
Vocabulary: INTERPRO
TermDefinition
IPR036877SUI1_dom_sf
IPR001950SUI1
IPR005874SUI1_euk
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19078-RACarg19078-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.780.10coord: 1..113
e-value: 6.6E-49
score: 167.3
NoneNo IPR availablePANTHERPTHR10388EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1coord: 1..113
NoneNo IPR availablePANTHERPTHR10388:SF35SUBFAMILY NOT NAMEDcoord: 1..113
IPR005874Eukaryotic translation initiation factor SUI1PIRSFPIRSF004499Transl_init_SUI1_Eukcoord: 1..113
e-value: 3.3E-49
score: 163.8
IPR005874Eukaryotic translation initiation factor SUI1TIGRFAMTIGR01160TIGR01160coord: 6..113
e-value: 2.2E-56
score: 187.1
IPR005874Eukaryotic translation initiation factor SUI1CDDcd11566eIF1_SUI1coord: 29..112
e-value: 9.2306E-50
score: 154.23
IPR001950SUI1 domainPFAMPF01253SUI1coord: 28..102
e-value: 8.2E-26
score: 90.3
IPR001950SUI1 domainPROSITEPS50296SUI1coord: 31..101
score: 24.349
IPR036877SUI1 domain superfamilySUPERFAMILYSSF55159eIF1-likecoord: 4..113

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19078Cla007679Watermelon (97103) v1carwmB0718
Carg19078Csa7G044260Cucumber (Chinese Long) v2carcuB0739
Carg19078MELO3C018807Melon (DHL92) v3.5.1carmeB0715
Carg19078ClCG02G001820Watermelon (Charleston Gray)carwcgB0696
Carg19078CSPI07G03840Wild cucumber (PI 183967)carcpiB0755
Carg19078Cucsa.148400Cucumber (Gy14) v1carcgyB0810
Carg19078CmaCh19G009300Cucurbita maxima (Rimu)carcmaB1008
Carg19078CmaCh11G018340Cucurbita maxima (Rimu)carcmaB1006
Carg19078CmoCh19G009550Cucurbita moschata (Rifu)carcmoB0981
Carg19078CmoCh11G019090Cucurbita moschata (Rifu)carcmoB0979
Carg19078Lsi11G014650Bottle gourd (USVL1VR-Ls)carlsiB659
Carg19078Cp4.1LG15g07650Cucurbita pepo (Zucchini)carcpeB1013
Carg19078Cp4.1LG04g03460Cucurbita pepo (Zucchini)carcpeB1015
Carg19078CsGy7G003490Cucumber (Gy14) v2carcgybB0717
Carg19078MELO3C018807.2Melon (DHL92) v3.6.1carmedB0728
Carg19078CsaV3_7G003720Cucumber (Chinese Long) v3carcucB0758
Carg19078Cla97C02G028230Watermelon (97103) v2carwmbB0752
Carg19078Bhi05G001163Wax gourdcarwgoB0848
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19078Carg19178Silver-seed gourdcarcarB590
The following block(s) are covering this gene:
GeneOrganismBlock
Carg19078Silver-seed gourdcarcarB362
Carg19078Silver-seed gourdcarcarB035
Carg19078Cucumber (Gy14) v1carcgyB0809
Carg19078Cucurbita maxima (Rimu)carcmaB1010
Carg19078Cucurbita moschata (Rifu)carcmoB0983
Carg19078Cucurbita pepo (Zucchini)carcpeB1016
Carg19078Bottle gourd (USVL1VR-Ls)carlsiB658