Carg19066 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19066
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Exosome component 10
Location	Cucurbita_argyrosperma_scaffold_112 : 1355 .. 8020 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAACGAAGGAAAAAACGAGAACGGAGCCATTGATTCTAATGGAGCTTCATCGCAAGGCCAAAATCGCTTTAGTTGTAGCGTCTCTTGCAGCGCTAACAATCTACTTTACGGCCAGACGGCGCCGGAAGCAGAGGAGCGTTCGTAGTTCGTGTTATTTGCGAGATGATCAGAAGCCTCAGTACGCATTTAAACGCGTCTTGGCTGACAATTCTTATTCTGCGTTCAAACATTTGAAGCTCGATATGAATACAGGTGAAGTTAGTCGGTTACTCTATTTCAAATATGATATTGTGTTTAGCTGCTGAGACTTTGAGTCATGTTATTAGAAGCAAATGGAGAGTTTAATGAATGAACGATATGATAAAGAGCTGTGATTTAGTTTTTTTATTGGATTTAGCAACCTTAATCTAAGTTGTTAATTGCATTTAGAAATGTTCGTTTGGGAAATGATGATTTATGTGCTTTTCAAGCTGAATAATTTCCATGGAGCAATAGGATATAGGGAAATGAAAATCTGGAATATTCTTGTATTGTTTTCTAATTTAATAGTTGGCGAAAAGTTGTCATAAGTATTTGAAATTTACTCTTGTTAGGATTATTAGCAACAATTCTTTCATGAATGGCTTTCATTTGTCTTCTCGTCAATCTTCAAGCTCCATTTTTCGTAAAAGATTTTGCAATGGTAGCTCTCAATGTTCTTACAAGGGGGTTGGCTGAGTGAAGTGAGTTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGCAGACAATGATGTAAACTCTCATCCCTACGAATCAGAAATACTATCGTTGTTGGAAAATTCTTCGTCAGAATTTGATTTTATTAGTAGTGAAAGAAACGGTTTTACTTTGAGTGGCACTTATGTTTGGGTTGAGACCGCTTCTCAATTGGAAGAACTCGTGGATGTGTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCTTTTCTGGGCTTCACTGCTTTAGTACAGGTAATTTACTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACAAACACACACTCTCAAAGGGCCTCTGTACACGTAAATGGATGAATCTTTCCTCACAATCCCCGTCTATTTAATTGTCACGTTCATGTTTTTGTCTTTTTATTTTGTTTGAAGCAGATTTCTACAGACAAGGAAGATTATTTGGTTGACACTATAGCTCTACATGATTCGATGAGTCTTCTACGTCCCGTCTTTGCCAATAGTCATATTTGCAAGGTACCGAAATATGTGCTTGGGTACTGGTTTAAGGATTTGATTTCTGACAAGCTTGGTATCTAGATTAAAAGCAATGTTTCAGAACCCCATCAATTTGGTATTGATGAGAAAAGTGAAGCAGTTGCATCAGCTGGAGGAATTCTATTGATTCTCTTCTTTGGGTTAATGTTTTATTTGGTATTAGAAAACTTTAGTTTATGAATGCAAGGTACCCATTAAATTAGTTTTTGTGTTTAGGTGTTTCATGGTGCTGATAATGACATTCTCTGGCTACAAAGGGACTTCCACATATATGTAGTCAATTTATTTGACACTGCGAAGGTGAGGATATGCTTTTTAAAGGAAAGAAATATTACCTATATAAGGAGGAAATATGGAGCTATGCACTTCTCATGTGTGAAAGAGTGAGAGGTCTTTCTTTTTTTTTTTCCCTGTTTTCATCTTGTGCTTGTTGTTACAATGTAGGCCTGTGAAGTGCTGTCAAAACCTCAGAAGTCACTGGCCTACTTACTAGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTGCAGGTTGGACATCTTGTCTTGAAAATGCACTATGTTGTATGAGAATCAACATCTTGATCATCTGATTTCGTATGTAAGATAACTATAGTGGTTGTAGGCATTTGATGCTGAAATATTAATTTTCCTGATTATACTTATAAGAATTTGTGAAACAAGCATTTTATAACATGTCTATCGTCATGTTCTATTCTATTTGAAAATAGTGACGTCGCACTAGTTGCATGTTTGACTGTCCAAGATTGCCATAGAGCTATTTCAAATGATGTGTAAATTTACTAAACCTATTTTACTTACAGCCTCAACTTAAATAAGATAAGGATTGATCATATCCTATCTTGTTATACATATAACGGCCTTTTTGGTCTTGCTTATTTGTGGTTATTCATTAATGGTCAGCGAGAAGATTGGAGACTAAGACCCCTATCAGAAGATATGGTGCGGTATGCTAGGACAGATGCCCACTACCTCCTACATATTGCAAACTGTTTACTTTCTGAGCTGAAACAGGTTAATGGTATGTCTTGGATCCGTTTGTGTTTGCTGCCATTCATTTTTTTTTTTTTTGTATAAGTTGTACTGTAAATGTGGAGAAATAAAAATGGATGGAAGATGAACATGATGATAACTAGAAATAAGGAAGAAAATAGGGCCATACTCGAGTAATGTATTAAAAGATTTTGTTAACTTATTGTGCAGTTTTCATAATAGATTCAATAGTGCAAATATTATCATCGATATTTTTTTTAACATTAATGTCTTAATATCGGTGAGCCACATTTCTCTACCATCTTCTGAAGATGTGAAATTTTTTAATTAAAAAATGGTTTTAGATATTGATTCACGCGCATTCTTTTTATGGCATGGTAGACAAAATGTAGAATTATGTATAATTTATTTGAGTGGCTTTAAAATTTTATTTATCAATTCAATTTTATTTTTCTTATAAACTACAATGATTTCGTTATTTTTTTAGGATTGTTCATTGATACTCAGCATCCATGTTCCATTAAGTTTGAGATTTTGATATTTTGGTTGATATCGATATATCAATATTTACTTCTTGCTCGTTCTTCGCATATTCCCATTTCTCATATCATGACTTTGACATTTTCATCTTTGATTACTCCAAACATTCGGGAAAAAAGCCTTTAAGGCCAGAGGCAGAGTAATTAACATTTTAATTGGCTACCTTCAAATTATATATCATCCCATATCATTAGATATCTAAATGCATTAATGTAGCAGAAAACTCTTCCACGATGGTAAATTCAATTTTCTTCTTGAGGCTAGTCGGCGATCAAACATGATTTGTTTGCAACTTTACACAAAAGAGACTGAAGGGTCTCCTGGAGAGTCTGCTGCATCATCAATATTTTACCGTCATCTAAAACAGTCAATTAAATTCCTTTAAAACTCAAGTGAGCTGCTTTCTCAACAACTTTGTGTTATATCATTTGAAGTAGTACCACAATACAAAATTTTGAAATTCTATTACCTGACTTTGAAACTTTCAGTTTCAGGATCATGTGAGGAGATTATGTGCTTGGCGAGACTTAATGGTCAGTAGTTTAATCATCATAAAAAAATGAAGAACATAATTGCTTATTCTCTAAGCTTTTTATATTTATTTTATTTTGAAATTTTTATCAATTTGATCTTACTCCGTTAGGTATTTTATGTCTAAGGGGGGTTTCGTGTTTCTAATTGAGAAGGAACCATTTTTGGTACTTAGTAAATAGCTTGTGTTAATTCTTTATAGGATGGACGCTAGGGTTTGGTTCACTAAGTGTTTTTAAGACTCGCTAGATTCCCTAAAATTTCATCTATAAATGTAAAATATTCGATGGGAGAGCATTTCATTTCAAATTTGTATAATGGTATGGTTCGGAAGAAGACTTCTATTAAGGCAACCGTGGGCTTTTCCACCAACCTCTAATAGTAGTTTTTCTCTTAATATCTAATGTGCCCACCTCTAAAAAGTTGATATTGACCTTTTACTGTAAATACTCCCACAGTAGTTGGTTGCTTAGGTTGAGAAGTAACCTTCCAGATGGCGAGACAGAAGATTGGGTCTCTGTGATGAACTCTTTGGAAGTTTAATCATGACACCTTAGTGAGGATCCAAATTTTATTGTATGAAGATTGGATGTTTATTTATTTATTTTTTGATAGGAAACAAAAGAAAATTAAATGAAAGAAGATTGGACGTTAAAGGAGCATACTTGACTATGTTGTTCTATAGTCATCTTACAAATAGGGAAAATCTTTTTTCTAAATAGGTGGCTAGAGTTATAGGCAGGAATACATATTCCAAAAAGGTCAAAATCTTTATATGGTCTCTAGTTCTAAAAGACGGCTGTCATTTGAAAGAGAAATGATCTCAATTGCCTCTTTCCAATTTGGCTAAAAATTAGACATCCTGAAGGTTAGACTTGTTACTTCATCGTTGAGCCTGACTCATTACCACCTTTGTTACCGGTTCCTTCTGCTTATAAGGACCATAATAAGTAAATTAACTATGATGGTTGCTTTTTAGCAAACGGAAGTTCCACTATGGCTGCTTACCTGAATCTGAGATTGTCATTTCATTTCAGGCTCGAGTTCATGATGAGAGCCTGAGATATGTGTTGTCAGATCAGGCTATTATAGCTCTTGCTACTCAAATGTCAAAAAATACGAGGGAGTTATATGCAACTATTGCACAAGCTGATTTGAATGTGGATTTGAGCCCGAGTCTGCTTCTTCCAGGCCCCTCCCCTGTTGTTTGTAGCCATTTGGATGATCTCCACTGTCTTCTCCGTGACAAGTCTGGTGACCTGGATAATATATTTTTGGGGATTTTACAAAAACTGTATAGGTTCTAATGGCAGTTGTCCCCTTTCTATATTTAATTATGCCCTGTTGGTCAAGTATAATCTAAAAATGATGACAATATCTTAGAAAAAATGATAGAAGAAAACGCAAAGAAAATGTCTAAAAAAGCTTCTAGAGAGCTTTTTGTGCAGAAGTTCTCCTGCCAAATCTCCAGTTTATCATAATTGTAGGATTTATGCAAATGATGGGGCGCTTGCTTTGCTACTGTGATCGGCGAAAACTTGAATGGTGGTTAGCATCTCTTAGTTTATTTCATGCAAGTTATAATTAAAACTGGTTATGCAATTGTGTTTGACAACATGCAACTATCTTTGTATTTAAACAGGTATTTGCGGCGAGAGTTGGCAGAGCTTGTTGATGATGATCCTCCTGCCATAAAGATTCTTTTGAAACCTAAAGGCCGTCCAGAAGATGAGGGCAATGACTTTTATATCCAGAGCAAAAGAATATATGTGTTGGTTGTGGTGAAGGAAACCACTATTTACGTATCGAATAATCCCCCTCATTGCTACAGAATACATTTTCCTGAGCATTTAAAAGTCATCGTTCCCATGATATTTGTCTTACTTTGTGTGGATTGTTCATGGAGTATGCCCATGCTGCTTGCCTGAGAAGCACAAGAGAGATTCTTGCTGCAGAATTTGGAATTCCACTTTTTGTTCGTAGGGTGGTTGATACCAAGGAGGCCTTTGATTTAGTTGAGTCATCTGACTCGGCCACCAACTTTCAGGAGGAAGGTGTGTCACCTTTAGAATTAAGAACAGCTGCTATGGCCCTGTTGCGGATGGACCACAGGATGCCACCAAACGTCAAAGAGGCACTCAGCATGTATGCTGTTGTGTACTTTGCAATTGAGATAGTCTTCGTATATGTGTCTATGTATATGTGTCCATGTGATTTAGAAATAAACATGCAGTTCAATGCTTGAGATACTAATAATTGACTCGAGTCATCTGCTATCGTAGCCATTGAAAAGATCTTTGGTTTCATGATATCAAATGCTTAATCATTTAATAGTGCTCCATCTTGGTAGAAATTTATCATTCAAGATTTTCTTGGTGCTATAGGATTAAATTAATCATCAATTATAGTAATTAGCATGTTTTCATATTCTCCATCAGTAGTTTGAGACGGTGAAGAAGGTCCTGAACATCATTCATTAGTATGCTGTAGGTATTGGCCCTTTGTAGACAATGGTTTTTAGTTATGTAGTTCCCATTCTTGTAGAATCTTCAGTAACACCCGGTAATTGTTGATTATCAATCCCTCTGAAATTCAAATTATATATTTTCCTCATCTCTCCTATCTTTGTTGTGTTTTCAGGTTGTTATGAGATACTATGGGCGGAGGGAGATATCTGAAGAAGATTTGGAAAAGGCTCTGCTTGTTGGCATGAGTCCTCATGAGAGAAGACGACTTCAGAAGAAAAAGGGTATAGCTTTGAAACATTCAGGACAGCATATTTTTCCAGATGCTGAGCATCAGAATGGTGCTTGTAGCATTGACTCATCGACTGTGACTAATTCATCCATTGGTATGTGCAGACTAGTTCGCTTTTGCTGATACATGTATTTTGCAAACGATAAAATGTTGTTCATAAGGGCGGAAAATAAGTACTTCAAGCAGTCATTCTTTCTGTTCTAATTCAATGCAGATGCAGATGCAGATGTTAACAATCACATGAACTCAGATAATGGTACCGTGCCCGAAACATGTTTGCCTTGTGGAGAGGTCAAAGTTTCTGATAACGGCTCCGCCATAACTGCTCAACCTAAATTTCAATTCTAATTGTCACTTTGGACATGGACCCACATGGTTAACAAGTAGTGCGATCATCTACTTGCAGAAATGTATGCGAGAGGATGGACATTTCCTCGTACAGTTCTTTGCAAAGGTGAGACAAGTGTTTTGTTGTGCTATTCAACTCTCGTCTTACCCCGCTAGGTTGGATTGATTCAACCACAGCGGT

mRNA sequence

AAAGAACGAAGGAAAAAACGAGAACGGAGCCATTGATTCTAATGGAGCTTCATCGCAAGGCCAAAATCGCTTTAGTTGTAGCGTCTCTTGCAGCGCTAACAATCTACTTTACGGCCAGACGGCGCCGGAAGCAGAGGAGCGTTCGTAGTTCGTGTTATTTGCGAGATGATCAGAAGCCTCAGTACGCATTTAAACGCGTCTTGGCTGACAATTCTTATTCTGCGTTCAAACATTTGAAGCTCGATATGAATACAGACAATGATGTAAACTCTCATCCCTACGAATCAGAAATACTATCGTTGTTGGAAAATTCTTCGTCAGAATTTGATTTTATTAGTAGTGAAAGAAACGGTTTTACTTTGAGTGGCACTTATGTTTGGGTTGAGACCGCTTCTCAATTGGAAGAACTCGTGGATGTGTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCTTTTCTGGGCTTCACTGCTTTAGTACAGATTTCTACAGACAAGGAAGATTATTTGGTTGACACTATAGCTCTACATGATTCGATGAGTCTTCTACGTCCCGTCTTTGCCAATAGTCATATTTGCAAGGTGTTTCATGGTGCTGATAATGACATTCTCTGGCTACAAAGGGACTTCCACATATATGTAGTCAATTTATTTGACACTGCGAAGGCCTGTGAAGTGCTGTCAAAACCTCAGAAGTCACTGGCCTACTTACTAGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTGCAGCGAGAAGATTGGAGACTAAGACCCCTATCAGAAGATATGGTGCGGTATGCTAGGACAGATGCCCACTACCTCCTACATATTGCAAACTGTTTACTTTCTGAGCTGAAACAGGTTAATGAAAACTCTTCCACGATGGTAAATTCAATTTTCTTCTTGAGGCTAGTCGGCGATCAAACATGATTTGTTTGCAACTTTACACAAAAGAGACTGAAGGGTCTCCTGGAGAGTCTGCTGCATCATCAATATTTTACCGTCATCTAAAACAGTCAATTAAATTCCTTTAAAACTCAATTTCAGGATCATGTGAGGAGATTATGTGCTTGGCGAGACTTAATGGCTCGAGTTCATGATGAGAGCCTGAGATATGTGTTGTCAGATCAGGCTATTATAGCTCTTGCTACTCAAATGTCAAAAAATACGAGGGAGTTATATGCAACTATTGCACAAGCTGATTTGAATGTGGATTTGAGCCCGAGTCTGCTTCTTCCAGGCCCCTCCCCTGTTGTTTGTAGCCATTTGGATGATCTCCACTGTCTTCTCCGTGACAAGTCTGGTGACCTGGATAATATATTTTTGGGGATTTTACAAAAACTGTATAGGTTCTAATGGCAGTTGTCCCCTTTCTATATTTAATTATGCCCTGTTGGTCAAGTATAATCTAAAAATGATGACAATATCTTAGAAAAAATGATAGAAGAAAACGCAAAGAAAATGTCTAAAAAAGCTTCTAGAGAGCTTTTTGTGCAGAAGTTCTCCTGCCAAATCTCCAGTTTATCATAATTGTAGGATTTATGCAAATGATGGGGCGCTTGCTTTGCTACTGTGATCGGCGAAAACTTGAATGGTATTTGCGGCGAGAGTTGGCAGAGCTTGTTGATGATGATCCTCCTGCCATAAAGATTCTTTTGAAACCTAAAGGCCGTCCAGAAGATGAGGGCAATGACTTTTATATCCAGAGCAAAAGAATATATGTGTTGGTTGTGGTGAAGGAAACCACTATTTACGTATCGAATAATCCCCCTCATTGCTACAGAATACATTTTCCTGAGCATTTAAAAGTCATCGTTCCCATGATATTTGTCTTACTTTGTGTGGATTGTTCATGGAGTATGCCCATGCTGCTTGCCTGAGAAGCACAAGAGAGATTCTTGCTGCAGAATTTGGAATTCCACTTTTTGTTCGTAGGGTGGTTGATACCAAGGAGGCCTTTGATTTAGTTGAGTCATCTGACTCGGCCACCAACTTTCAGGAGGAAGGTGTGTCACCTTTAGAATTAAGAACAGCTGCTATGGCCCTGTTGCGGATGGACCACAGGATGCCACCAAACGTCAAAGAGGCACTCAGCATGTTGTTATGAGATACTATGGGCGGAGGGAGATATCTGAAGAAGATTTGGAAAAGGCTCTGCTTGTTGGCATGAGTCCTCATGAGAGAAGACGACTTCAGAAGAAAAAGGGTATAGCTTTGAAACATTCAGGACAGCATATTTTTCCAGATGCTGAGCATCAGAATGGTGCTTGTAGCATTGACTCATCGACTGTGACTAATTCATCCATTGATGCAGATGCAGATGTTAACAATCACATGAACTCAGATAATGGTACCGTGCCCGAAACATGTTTGCCTTGTGGAGAGGTCAAAGTTTCTGATAACGGCTCCGCCATAACTGCTCAACCTAAATTTCAATTCTAATTGTCACTTTGGACATGGACCCACATGGTTAACAAGTAGTGCGATCATCTACTTGCAGAAATGTATGCGAGAGGATGGACATTTCCTCGTACAGTTCTTTGCAAAGGTGAGACAAGTGTTTTGTTGTGCTATTCAACTCTCGTCTTACCCCGCTAGGTTGGATTGATTCAACCACAGCGGT

Coding sequence (CDS)

ATGGAGCTTCATCGCAAGGCCAAAATCGCTTTAGTTGTAGCGTCTCTTGCAGCGCTAACAATCTACTTTACGGCCAGACGGCGCCGGAAGCAGAGGAGCGTTCGTAGTTCGTGTTATTTGCGAGATGATCAGAAGCCTCAGTACGCATTTAAACGCGTCTTGGCTGACAATTCTTATTCTGCGTTCAAACATTTGAAGCTCGATATGAATACAGACAATGATGTAAACTCTCATCCCTACGAATCAGAAATACTATCGTTGTTGGAAAATTCTTCGTCAGAATTTGATTTTATTAGTAGTGAAAGAAACGGTTTTACTTTGAGTGGCACTTATGTTTGGGTTGAGACCGCTTCTCAATTGGAAGAACTCGTGGATGTGTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCTTTTCTGGGCTTCACTGCTTTAGTACAGATTTCTACAGACAAGGAAGATTATTTGGTTGACACTATAGCTCTACATGATTCGATGAGTCTTCTACGTCCCGTCTTTGCCAATAGTCATATTTGCAAGGTGTTTCATGGTGCTGATAATGACATTCTCTGGCTACAAAGGGACTTCCACATATATGTAGTCAATTTATTTGACACTGCGAAGGCCTGTGAAGTGCTGTCAAAACCTCAGAAGTCACTGGCCTACTTACTAGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTGCAGCGAGAAGATTGGAGACTAAGACCCCTATCAGAAGATATGGTGCGGTATGCTAGGACAGATGCCCACTACCTCCTACATATTGCAAACTGTTTACTTTCTGAGCTGAAACAGGTTAATGAAAACTCTTCCACGATGGTAAATTCAATTTTCTTCTTGAGGCTAGTCGGCGATCAAACATGA

Protein sequence

MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSSTMVNSIFFLRLVGDQT

Homology

[Close]

BLAST of Carg19066 vs. NCBI nr
Match: XP_022930823.1 (protein RRP6-like 3 isoform X1 [Cucurbita moschata])

HSP 1 Score: 559.3 bits (1440), Expect = 8.0e-156
Identity = 284/287 (98.95%), Postives = 284/287 (98.95%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELHRK KIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERN FTLS TYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 288
           MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST
Sbjct: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 287

[Close]

BLAST of Carg19066 vs. NCBI nr
Match: XP_022930824.1 (protein RRP6-like 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 554.7 bits (1428), Expect = 2.0e-154
Identity = 284/288 (98.61%), Postives = 284/288 (98.61%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELHRK KIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERN FTLS TYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVN-ENSST 288
           MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVN ENSST
Sbjct: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSST 288

[Close]

BLAST of Carg19066 vs. NCBI nr
Match: XP_022988684.1 (protein RRP6-like 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 553.1 bits (1424), Expect = 5.7e-154
Identity = 281/287 (97.91%), Postives = 281/287 (97.91%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL RKAKIALVVAS AALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELQRKAKIALVVASFAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERN FTLS TYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAK CEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKTCEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 288
           MLQREDWR RPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST
Sbjct: 241 MLQREDWRQRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 287

[Close]

BLAST of Carg19066 vs. NCBI nr
Match: XP_023531755.1 (protein RRP6-like 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531756.1 protein RRP6-like 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531758.1 protein RRP6-like 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531759.1 protein RRP6-like 3 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 552.7 bits (1423), Expect = 7.5e-154
Identity = 280/287 (97.56%), Postives = 283/287 (98.61%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNS+PYESEILSLLENSSSEFDFISSERN FTLS TY+WVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSYPYESEILSLLENSSSEFDFISSERNDFTLSDTYIWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKE VFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 288
           MLQREDWR RPLSE+MVRYARTDAHYLLHIANCLLSELKQVNENSST
Sbjct: 241 MLQREDWRQRPLSEEMVRYARTDAHYLLHIANCLLSELKQVNENSST 287

[Close]

BLAST of Carg19066 vs. NCBI nr
Match: XP_023531760.1 (protein RRP6-like 3 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 552.7 bits (1423), Expect = 7.5e-154
Identity = 280/287 (97.56%), Postives = 283/287 (98.61%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNS+PYESEILSLLENSSSEFDFISSERN FTLS TY+WVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSYPYESEILSLLENSSSEFDFISSERNDFTLSDTYIWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKE VFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKETVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 288
           MLQREDWR RPLSE+MVRYARTDAHYLLHIANCLLSELKQVNENSST
Sbjct: 241 MLQREDWRQRPLSEEMVRYARTDAHYLLHIANCLLSELKQVNENSST 287

[Close]

BLAST of Carg19066 vs. TAIR10
Match: AT2G32415.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain)

HSP 1 Score: 381.3 bits (978), Expect = 5.4e-106
Identity = 199/304 (65.46%), Postives = 234/304 (76.97%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVR-----SSCYLRDDQKPQYAFKRVLA 60
           MEL  KAK+ + VASL A+TI F                 SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYXXXXXXXXXXXSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  DNSYSAFKHLKL----DMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTY 120
           DNSYS FKHLKL      + +   N HPYE+EI  LLEN   EF F+  E +   +S +Y
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECS-LEMSDSY 120

Query: 121 VWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDS 180
           VWVET SQL+EL ++L KE VFAVDTEQHSLRSFLGFTAL+QIST +ED+LVDTIALHD 
Sbjct: 121 VWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDV 180

Query: 181 MSLLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLE 240
           MS+LRPVF++ +ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLE
Sbjct: 181 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 240

Query: 241 TYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSSTMVNS 296
           T CGVATNK+LQREDWR RPLSE+MVRYARTDAHYLL+IA+ L +ELKQ+  +SS+  + 
Sbjct: 241 TVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDDR 300

[Close]

BLAST of Carg19066 vs. TAIR10
Match: AT1G54440.2 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain)

HSP 1 Score: 177.2 bits (448), Expect = 1.5e-44
Identity = 108/254 (42.52%), Postives = 145/254 (57.09%), Query Frame = 0


Query: 45  KPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISS--- 104
           KPQ  +K +L DN+ + F+H+ L+ + D     HP E   ++  ++ + SE   +     
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPVKPLPL 111

Query: 105 ERNGFTLSGTYVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKED 164
           E   F L      VE    LE+L   L     FAVD E +  R+F G T L+QIST  ED
Sbjct: 112 EETPFKL------VEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTED 171

Query: 165 YLVDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVL 224
           Y+VD   L D +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL
Sbjct: 172 YIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVL 231

Query: 225 SKPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSEL- 284
              + SL +LL+ YCGVA NK  Q+ DWR+RPL + M RYAR D HYLL+I + +  EL 
Sbjct: 232 KLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELH 291

Query: 285 ---KQVNENSSTMV 290
              K+  ++ S +V
Sbjct: 292 TMAKEDEQSDSPLV 298

[Close]

BLAST of Carg19066 vs. TAIR10
Match: AT5G35910.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain)

HSP 1 Score: 176.4 bits (446), Expect = 2.6e-44
Identity = 102/246 (41.46%), Postives = 146/246 (59.35%), Query Frame = 0


Query: 44  QKPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISSER 103
           +KPQ  +  +L +N+   F+H+ L+ + D+    HP E   +L  ++   +E + +    
Sbjct: 196 KKPQEEY-NILVNNANLPFEHVWLERSEDDLRAMHPLEKFSVLDFVDKDVNEMEPVKP-- 255

Query: 104 NGFTLSGT-YVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDY 163
               L  T + +V+    L+ELV  L     FAVD E +  RSF G T L+QIST  EDY
Sbjct: 256 --LPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDY 315

Query: 164 LVDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLS 223
           +VDT  L   +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL+
Sbjct: 316 IVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN 375

Query: 224 KPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQ 283
             + SL +LL+ +CGV  NK  Q  DWR+RPL E+M RYAR D HYLL+I + +  EL++
Sbjct: 376 LERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQR 435

Query: 284 VNENSS 287
           + ++ +
Sbjct: 436 MAKDDA 436

[Close]

BLAST of Carg19066 vs. TAIR10
Match: AT1G56310.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-08
Identity = 44/169 (26.04%), Postives = 77/169 (45.56%), Query Frame = 0


Query: 112 VWVETASQLEELVDVLNKEMVFAVDTE---QHSLRSFLGFTALVQISTDKEDYLVDTIAL 171
           VWV+  ++L +    L    V  +D E    +   S     +++QI +D + +++D I L
Sbjct: 360 VWVDEVNELRKATSFLEGCRVVGIDCEWKPNYIKGSKQNKVSIMQIGSDTKIFILDLIKL 419

Query: 172 HDSMS-----LLRPVFANSHICKVFHGADNDILWLQRDF-HIYVVNLFDTAKACE-VLSK 231
           ++  S      L  +  +    K+ +    DI  L   +  +     +D     + V ++
Sbjct: 420 YNDASEILDNCLSHILQSKSTLKLGYNFQCDIKQLALSYGDLKCFERYDMLLDIQNVFNE 479

Query: 232 PQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHI 271
           P   LA L +   GV+ NK  +  DW  RPLS++ + YA  DA  L+HI
Sbjct: 480 PFGGLAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALDAAVLIHI 528

[Close]

BLAST of Carg19066 vs. TAIR10
Match: AT5G24340.1 (3'-5' exonuclease domain-containing protein)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-08
Identity = 48/183 (26.23%), Postives = 77/183 (42.08%), Query Frame = 0


Query: 117 ASQLEELVDVLNKEMVFAVDTE---QHSLRSFLGFTALVQI------STDKED-YLVDTI 176
           +S+   L     +  + A+D E   QHS  S      L+Q+      +TD  D +L+D  
Sbjct: 15  SSEFTHLKWSFTRSTIIALDAEWKPQHSNTSSFPTVTLLQVACRLSHATDVSDVFLIDLS 74

Query: 177 ALH--DSMSLLRPVFANSHICKVFHGADNDILWLQRDFHIY-----------------VV 236
           ++H      LL  +F +  + K+      D+++L   F  +                 + 
Sbjct: 75  SIHLPSVWELLNDMFVSPDVLKLGFRFKQDLVYLSSTFTQHGCEGGFQEVKQYLDITSIY 134

Query: 237 NLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYL 271
           N     +      K  KSLA + +    ++ +K LQ  DW  RPL+E+   YA TDAH L
Sbjct: 135 NYLQHKRFGRKAPKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCL 194

[Close]

BLAST of Carg19066 vs. Swiss-Prot
Match: sp|A9LLI8|RP6L3_ARATH (Protein RRP6-like 3 OS=Arabidopsis thaliana OX=3702 GN=RRP6L3 PE=2 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.8e-104
Identity = 200/305 (65.57%), Postives = 235/305 (77.05%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVR-----SSCYLRDDQKPQYAFKRVLA 60
           MEL  KAK+ + VASL A+TI F                 SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYXXXXXXXXXXXSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  DNSYSAFKHLKL----DMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTY 120
           DNSYS FKHLKL      + +   N HPYE+EI  LLEN   EF F+  E +   +S +Y
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECS-LEMSDSY 120

Query: 121 VWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDS 180
           VWVET SQL+EL ++L KE VFAVDTEQHSLRSFLGFTAL+QIST +ED+LVDTIALHD 
Sbjct: 121 VWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDV 180

Query: 181 MSLLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLE 240
           MS+LRPVF++ +ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLE
Sbjct: 181 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 240

Query: 241 TYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQV-NENSSTMVN 296
           T CGVATNK+LQREDWR RPLSE+MVRYARTDAHYLL+IA+ L +ELKQ+  E+SS+  +
Sbjct: 241 TVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATEDSSSPDD 300

[Close]

BLAST of Carg19066 vs. Swiss-Prot
Match: sp|Q0WVE8|RP6L1_ARATH (Protein RRP6-like 1 OS=Arabidopsis thaliana OX=3702 GN=RRP6L1 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.8e-43
Identity = 108/254 (42.52%), Postives = 145/254 (57.09%), Query Frame = 0


Query: 45  KPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISS--- 104
           KPQ  +K +L DN+ + F+H+ L+ + D     HP E   ++  ++ + SE   +     
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPVKPLPL 111

Query: 105 ERNGFTLSGTYVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKED 164
           E   F L      VE    LE+L   L     FAVD E +  R+F G T L+QIST  ED
Sbjct: 112 EETPFKL------VEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTED 171

Query: 165 YLVDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVL 224
           Y+VD   L D +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL
Sbjct: 172 YIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVL 231

Query: 225 SKPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSEL- 284
              + SL +LL+ YCGVA NK  Q+ DWR+RPL + M RYAR D HYLL+I + +  EL 
Sbjct: 232 KLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELH 291

Query: 285 ---KQVNENSSTMV 290
              K+  ++ S +V
Sbjct: 292 TMAKEDEQSDSPLV 298

[Close]

BLAST of Carg19066 vs. Swiss-Prot
Match: sp|A9LLI7|RP6L2_ARATH (Protein RRP6-like 2 OS=Arabidopsis thaliana OX=3702 GN=RRP6L2 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 4.8e-43
Identity = 102/246 (41.46%), Postives = 146/246 (59.35%), Query Frame = 0


Query: 44  QKPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISSER 103
           +KPQ  +  +L +N+   F+H+ L+ + D+    HP E   +L  ++   +E + +    
Sbjct: 196 KKPQEEY-NILVNNANLPFEHVWLERSEDDLRAMHPLEKFSVLDFVDKDVNEMEPVKP-- 255

Query: 104 NGFTLSGT-YVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDY 163
               L  T + +V+    L+ELV  L     FAVD E +  RSF G T L+QIST  EDY
Sbjct: 256 --LPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDY 315

Query: 164 LVDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLS 223
           +VDT  L   +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL+
Sbjct: 316 IVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN 375

Query: 224 KPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQ 283
             + SL +LL+ +CGV  NK  Q  DWR+RPL E+M RYAR D HYLL+I + +  EL++
Sbjct: 376 LERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQR 435

Query: 284 VNENSS 287
           + ++ +
Sbjct: 436 MAKDDA 436

[Close]

BLAST of Carg19066 vs. Swiss-Prot
Match: sp|Q10146|RRP6_SCHPO (Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp6 PE=3 SV=2)

HSP 1 Score: 172.6 bits (436), Expect = 6.9e-42
Identity = 85/183 (46.45%), Postives = 117/183 (63.93%), Query Frame = 0


Query: 112 VWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDS 171
           +WV T SQL +++  L      AVD E H  RSF GF  L+QIS  ++D++VDT+ L + 
Sbjct: 219 IWVSTESQLSDMLKELQNSKEIAVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREE 278

Query: 172 MSLLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLE 231
           +  L  VF N +I KVFHGA  DI+WLQRDF +YVVNLFDT  A +VL      LA+LL+
Sbjct: 279 LEALNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQ 338

Query: 232 TYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSEL-KQVNENSSTMVN 291
            YC    +K  Q  DWR+RPL  +M++YA++D HYLL+I + L +EL  +  E    ++ 
Sbjct: 339 KYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNELISKSAERKENLMQ 398

Query: 292 SIF 294
           S+F
Sbjct: 399 SVF 401

[Close]

BLAST of Carg19066 vs. Swiss-Prot
Match: sp|Q12149|RRP6_YEAST (Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRP6 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-41
Identity = 104/266 (39.10%), Postives = 149/266 (56.02%), Query Frame = 0


Query: 44  QKPQYAFKRVLADNSY-----------SAFKHLKLDMN-TDNDVNS-----HPYESEILS 103
           +KPQ  FK  + ++             +A K L   +   D+D N+     HPYE EI  
Sbjct: 130 EKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDH 189

Query: 104 LLENSSSEFDFISSERNGFTLSGTY-VWVETASQLEELVDVLNKEMVFAVDTEQHSLRSF 163
             +  S E   I  E    +   +  +WV+T+++LE +++ L      AVD E H  RS+
Sbjct: 190 --QEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSY 249

Query: 164 LGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFANSHICKVFHGADNDILWLQRDFHIY 223
            G   L+QIST + DYLVDT+ L +++ +L  VF N  I KVFHGA  DI+WLQRD  +Y
Sbjct: 250 YGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLY 309

Query: 224 VVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAH 283
           VV LFDT  A + +  P+ SLAYLLE +    T+K  Q  DWR+RPLS+ M  YAR D H
Sbjct: 310 VVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTH 369

Query: 284 YLLHIANCLLSELKQVNENSSTMVNS 292
           +LL+I + L ++L + N+ +  +  S
Sbjct: 370 FLLNIYDQLRNKLIESNKLAGVLYES 393

[Close]

BLAST of Carg19066 vs. TrEMBL
Match: tr|A0A0A0K254|A0A0A0K254_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G043600 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 3.4e-139
Identity = 258/287 (89.90%), Postives = 266/287 (92.68%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL  K KIALVVAS AALTI FTARRRRK+RSV +SCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELQHKLKIALVVASFAALTILFTARRRRKRRSVSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKL+MN DNDVNSHPYESEILSLLENSS EF+FI SER   TLS TY WVET SQL
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPEFNFI-SERTDLTLSDTYAWVETVSQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTAL+QIST KEDYLVDTIALHDSM+LLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHKEDYLVDTIALHDSMNLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NS ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 288
           MLQREDWR RPL  DMV+YARTDAHYLL+IANCLL ELKQVNENSST
Sbjct: 241 MLQREDWRQRPLPADMVQYARTDAHYLLYIANCLLVELKQVNENSST 286

[Close]

BLAST of Carg19066 vs. TrEMBL
Match: tr|A0A1S4E0K2|A0A1S4E0K2_CUCME (protein RRP6-like 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495596 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 2.4e-132
Identity = 249/287 (86.76%), Postives = 256/287 (89.20%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL  K KIALVVAS AALTI FTAR      S  +SCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELQHKVKIALVVASFAALTILFTARXXXXXXSGSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKL+MN DNDVNSHPYESEILSLLENSS E +FI SER   TLS TY WVET SQL
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPELNFI-SERTDLTLSDTYAWVETESQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTAL+QIST KEDYLVDTIALHDSM+LLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHKEDYLVDTIALHDSMNLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           N  ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKP KSLAYLLETYC VATNK
Sbjct: 181 NRSICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPMKSLAYLLETYCRVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 288
           MLQREDWR RPLS DMV+YARTDAHYLL+IANCLL ELKQVNENSST
Sbjct: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSST 286

[Close]

BLAST of Carg19066 vs. TrEMBL
Match: tr|A0A1S3C120|A0A1S3C120_CUCME (protein RRP6-like 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495596 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 2.4e-132
Identity = 249/287 (86.76%), Postives = 256/287 (89.20%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL  K KIALVVAS AALTI FTAR      S  +SCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELQHKVKIALVVASFAALTILFTARXXXXXXSGSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKL+MN DNDVNSHPYESEILSLLENSS E +FI SER   TLS TY WVET SQL
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPELNFI-SERTDLTLSDTYAWVETESQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTAL+QIST KEDYLVDTIALHDSM+LLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHKEDYLVDTIALHDSMNLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           N  ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKP KSLAYLLETYC VATNK
Sbjct: 181 NRSICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPMKSLAYLLETYCRVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 288
           MLQREDWR RPLS DMV+YARTDAHYLL+IANCLL ELKQVNENSST
Sbjct: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSST 286

[Close]

BLAST of Carg19066 vs. TrEMBL
Match: tr|A0A1Q3BGB7|A0A1Q3BGB7_CEPFO (HRDC domain-containing protein/DNA_pol_A_exo1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10487 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 8.8e-111
Identity = 206/300 (68.67%), Postives = 247/300 (82.33%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTA--RRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNS 60
           ME   K +IA+ +AS  AL+I FT+  RRRRKQ+   +SCYLR D KPQ  FKRVLADNS
Sbjct: 1   MENREKIRIAMAIASFVALSILFTSQYRRRRKQKCPATSCYLRTDHKPQCTFKRVLADNS 60

Query: 61  YSAFKHLKLDMNTDNDV--NSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVET 120
           YS F HLKL+  T N++  NSHPYE+EI++L+EN   E+D +  +     +S +YVWVET
Sbjct: 61  YSPFNHLKLNQKTHNEISSNSHPYEAEIMALMENPQVEYDLVFDDLY-LRMSDSYVWVET 120

Query: 121 ASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLR 180
            SQL EL DVL++E VF VDTEQHSLRSFLGFTAL+QIST KEDYLVDTIALHD+M +LR
Sbjct: 121 ESQLSELADVLSRERVFGVDTEQHSLRSFLGFTALIQISTKKEDYLVDTIALHDAMDMLR 180

Query: 181 PVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGV 240
           PVFA+  ICKVFHGADNDILWLQRDFHIY+VNLFDTAKAC++LSKPQ+SLAYLLETYCGV
Sbjct: 181 PVFADPSICKVFHGADNDILWLQRDFHIYIVNLFDTAKACDLLSKPQRSLAYLLETYCGV 240

Query: 241 ATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQ-VNENSSTMVNSIFFL 296
           ATNK+LQREDWR RP S +MV+Y+RTDAHYLL+IANCL++ELK+ VNENSS + + + F+
Sbjct: 241 ATNKLLQREDWRQRPFSVEMVQYSRTDAHYLLYIANCLIAELKEKVNENSSCLDDKLHFV 299

[Close]

BLAST of Carg19066 vs. TrEMBL
Match: tr|D7TE76|D7TE76_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0059g00620 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 3.1e-108
Identity = 201/289 (69.55%), Postives = 241/289 (83.39%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTA--RRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNS 60
           ME   K KI + +AS A L+I+FTA  R+RR ++  +SSCYL  + KPQY+FK VLADNS
Sbjct: 1   MESKEKIKIVVAIASFAVLSIFFTAQYRKRRYRKCTQSSCYLHTEPKPQYSFKLVLADNS 60

Query: 61  YSAFKHLKL-DMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETA 120
           YSAFKHLKL + N++  ++SHPYE+EI +LLEN+  EF F  +E     +S +YVWVET 
Sbjct: 61  YSAFKHLKLGESNSETSLHSHPYEAEISALLENAEIEFSF-GTESMDLKISDSYVWVETE 120

Query: 121 SQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRP 180
            QL+EL DVL+K+ VFAVDTEQHSLRSFLGFTAL+QIST  EDYLVDTIALHD++ +L+P
Sbjct: 121 LQLKELADVLSKQRVFAVDTEQHSLRSFLGFTALIQISTQNEDYLVDTIALHDTLDVLQP 180

Query: 181 VFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVA 240
           VFAN  ICKVFHGADND+LWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVA
Sbjct: 181 VFANPSICKVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVA 240

Query: 241 TNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSS 287
           TNK+LQREDWR RPLS +M+ YA+TDAHYLL+IANCL++EL+Q +  +S
Sbjct: 241 TNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIAELRQHDSENS 288

The following BLAST results are available for this feature:

BLAST of Carg19066 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930823.1	8.0e-156	98.95	protein RRP6-like 3 isoform X1 [Cucurbita moschata]	[more]
XP_022930824.1	2.0e-154	98.61	protein RRP6-like 3 isoform X2 [Cucurbita moschata]	[more]
XP_022988684.1	5.7e-154	97.91	protein RRP6-like 3 isoform X1 [Cucurbita maxima]	[more]
XP_023531755.1	7.5e-154	97.56	protein RRP6-like 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531756.1 prot...	[more]
XP_023531760.1	7.5e-154	97.56	protein RRP6-like 3 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg19066 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32415.1	5.4e-106	65.46	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT1G54440.2	1.5e-44	42.52	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT5G35910.1	2.6e-44	41.46	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT1G56310.1	1.0e-08	26.04	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G24340.1	3.0e-08	26.23	3'-5' exonuclease domain-containing protein	[more]

BLAST of Carg19066 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A9LLI8\|RP6L3_ARATH	2.8e-104	65.57	Protein RRP6-like 3 OS=Arabidopsis thaliana OX=3702 GN=RRP6L3 PE=2 SV=1	[more]
sp\|Q0WVE8\|RP6L1_ARATH	2.8e-43	42.52	Protein RRP6-like 1 OS=Arabidopsis thaliana OX=3702 GN=RRP6L1 PE=2 SV=1	[more]
sp\|A9LLI7\|RP6L2_ARATH	4.8e-43	41.46	Protein RRP6-like 2 OS=Arabidopsis thaliana OX=3702 GN=RRP6L2 PE=2 SV=1	[more]
sp\|Q10146\|RRP6_SCHPO	6.9e-42	46.45	Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
sp\|Q12149\|RRP6_YEAST	1.2e-41	39.10	Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]

BLAST of Carg19066 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K254\|A0A0A0K254_CUCSA	3.4e-139	89.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G043600 PE=4 SV=1	[more]
tr\|A0A1S4E0K2\|A0A1S4E0K2_CUCME	2.4e-132	86.76	protein RRP6-like 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495596 PE=4 SV=1	[more]
tr\|A0A1S3C120\|A0A1S3C120_CUCME	2.4e-132	86.76	protein RRP6-like 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495596 PE=4 SV=1	[more]
tr\|A0A1Q3BGB7\|A0A1Q3BGB7_CEPFO	8.8e-111	68.67	HRDC domain-containing protein/DNA_pol_A_exo1 domain-containing protein OS=Cepha...	[more]
tr\|D7TE76\|D7TE76_VITVI	3.1e-108	69.55	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0059g00620 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0008408	3'-5' exonuclease activity
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR002562	3'-5'_exonuclease_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19066-RA	Carg19066-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002562	3'-5' exonuclease domain	SMART	SM00474	35exoneu6	coord: 111..279 e-value: 1.6E-42 score: 157.3
IPR002562	3'-5' exonuclease domain	PFAM	PF01612	DNA_pol_A_exo1	coord: 111..278 e-value: 1.5E-46 score: 158.2
None	No IPR available	GENE3D	G3DSA:3.30.420.500		coord: 19..295 e-value: 6.0E-89 score: 300.3
None	No IPR available	PANTHER	PTHR12124	POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED	coord: 11..288
None	No IPR available	PANTHER	PTHR12124:SF41	PROTEIN RRP6-LIKE 3	coord: 11..288
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 45..282

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19066	Cla007665	Watermelon (97103) v1	carwmB0718
Carg19066	Csa7G043600	Cucumber (Chinese Long) v2	carcuB0739
Carg19066	MELO3C018818	Melon (DHL92) v3.5.1	carmeB0715
Carg19066	ClCG02G001940	Watermelon (Charleston Gray)	carwcgB0696
Carg19066	CSPI07G03690	Wild cucumber (PI 183967)	carcpiB0755
Carg19066	Cucsa.148550	Cucumber (Gy14) v1	carcgyB0810
Carg19066	CmaCh11G018240	Cucurbita maxima (Rimu)	carcmaB1006
Carg19066	CmoCh11G018970	Cucurbita moschata (Rifu)	carcmoB0979
Carg19066	Lsi11G014510	Bottle gourd (USVL1VR-Ls)	carlsiB659
Carg19066	Cp4.1LG04g03580	Cucurbita pepo (Zucchini)	carcpeB1015
Carg19066	CsGy7G003340	Cucumber (Gy14) v2	carcgybB0717
Carg19066	MELO3C018818.2	Melon (DHL92) v3.6.1	carmedB0728
Carg19066	CsaV3_7G003570	Cucumber (Chinese Long) v3	carcucB0758
Carg19066	Bhi05G001177	Wax gourd	carwgoB0848

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None