Carg18942 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18942
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	K+-H+ exchange-like protein
Location	Cucurbita_argyrosperma_scaffold_086 : 326363 .. 327784 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGCGGCGGGAGTTCTCTTCACCCGCGTTCTTGCATTAGTCGCAACGGCGCGTATTTAAGACTCATTTCGTTCACTTTCGAGTTCGCGTTCGAGTTCTCTCCACATTTTCCACATTTGGTTCAGAGAAACCAATTTGCTTAGGGATTAGTGTTTATGTGACAGAGGGAGGAGTTCGTGTACCGACGAAGCCTCTTCTCCATTGGAATTTTGGAACGAGGAGAGCTAGATTGGTAGTGTTTCCAATCAGAGGAAGAAATTGGTGTTTCAGCAGATCCATCGACCTTGCCGCTTCGGATTCTGCTTCTACTCAGATTCCTTCCACTTTGAAGGATCTCTGGACAAAAATTCCATCGTCTTCTTCCTCCAAATCAGACGTTCTCTCCCGCAGCACTGGTAGAAGCAATGCGGAGATTGTTACTGATTTCATCTCTTTCAAGGTCCTCCATATTCTATTCAGTTTCGTTTCGCTTCTTTGATCTGGTATTCGTTTTGATCGAATCAAACATTGCGATGTCATGGACGTCAGATGTATAAAGCGTGGACTGCTCTTGAGAAGGCGCCTGATAAATCGTTTAAAAATAAACTTTGTTGAGGATTATTGGGATTGGGAGTGTCCCACATTGGTTAATTTAGTGGAAGATCATGGGTTTATAAGTGAGGAATACTATCTCCATTGGTCTGAGGCCTTTTGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATACTCAAAGTGGACAATATCATCATGAGAGCTTATGCTCAAAGTGGACAATATCATACTATTGTGGAGAGTCGTGATTTCTAACATGGTATCAGAGCCATGCCCTAAACCTAACCATGCCAATAGAATCCTCAAATATCGAACAAAAAATGGCGAGCCTCGAAGGTATAGTCAAAAGTGACTAAAGTGTCGAACAAATGGTGTACTTTGTTCGAGGGCTCCAGAGAAAGGAGTCGAGCCTCAATTAAGGGGAAGCTCCATAAGCCTCCCTATTGTGGAGAGTCGTGATTCCTAACAAACTTCACGGGTAAAGTGTCGCCAGCGCGATTCTATTAGTCCTATGTCACATTTCTAGTGAAAGCAACTGGATCTTTATTGATTTTTCTGCTTGTAGGATCGGATTGATGCTTTTGTCTCGAGTTACGCCGTCTGAGATATTCTTGAAGTCAATAACTAAAGATATCACGAGTGTCGAAATAACATATCCATCGAGGTTTCATCTCTTTTACTTCGTTATTTTAAAAACATTGCTGCTTCTTTATCTACTTGAAATCCATTTCCGATGCCTTTTTCAATACTTAATTACATAAATTGTTACTATTATCACAAATTGTTATGTTACTTCACTGATTTCTTGCGACATTACAGTTTGAATCCACGGCTAGTTCGCAGGAGGTTACGGCATATTGCTCTCAG

mRNA sequence

ATGGGATGCGGCGGGAGTTCTCTTCACCCGCAGGGAGGAGTTCGTGTACCGACGAAGCCTCTTCTCCATTGGAATTTTGGAACGAGGAGAGCTAGATTGGTAGTGTTTCCAATCAGAGGAAGAAATTGGTGTTTCAGCAGATCCATCGACCTTGCCGCTTCGGATTCTGCTTCTACTCAGATTCCTTCCACTTTGAAGGATCTCTGGACAAAAATTCCATCGTCTTCTTCCTCCAAATCAGACGTTCTCTCCCGCAGCACTGGTAGAAGCAATGCGGAGATTGTTACTGATTTCATCTCTTTCAAGGATCGGATTGATGCTTTTGTCTCGAGTTACGCCTTTGAATCCACGGCTAGTTCGCAGGAGGTTACGGCATATTGCTCTCAG

Coding sequence (CDS)

ATGGGATGCGGCGGGAGTTCTCTTCACCCGCAGGGAGGAGTTCGTGTACCGACGAAGCCTCTTCTCCATTGGAATTTTGGAACGAGGAGAGCTAGATTGGTAGTGTTTCCAATCAGAGGAAGAAATTGGTGTTTCAGCAGATCCATCGACCTTGCCGCTTCGGATTCTGCTTCTACTCAGATTCCTTCCACTTTGAAGGATCTCTGGACAAAAATTCCATCGTCTTCTTCCTCCAAATCAGACGTTCTCTCCCGCAGCACTGGTAGAAGCAATGCGGAGATTGTTACTGATTTCATCTCTTTCAAGGATCGGATTGATGCTTTTGTCTCGAGTTACGCCTTTGAATCCACGGCTAGTTCGCAGGAGGTTACGGCATATTGCTCTCAG

Protein sequence

MGCGGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFKDRIDAFVSSYAFESTASSQEVTAYCSQ

Homology

[Close]

BLAST of Carg18942 vs. NCBI nr
Match: XP_022953932.1 (uncharacterized protein LOC111456340 [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 7.3e-42
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 3   CGGSSLH-PQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQI 62
           C G S++  +GGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSAS+QI
Sbjct: 44  CLGISVYVTEGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASSQI 103

Query: 63  PSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK 103
           PSTLKDLWTKIPSSSSSKSD LSRSTGRSNAEI TDFISFK
Sbjct: 104 PSTLKDLWTKIPSSSSSKSDALSRSTGRSNAEIFTDFISFK 144

[Close]

BLAST of Carg18942 vs. NCBI nr
Match: XP_022991797.1 (uncharacterized protein LOC111488336 [Cucurbita maxima])

HSP 1 Score: 177.2 bits (448), Expect = 3.6e-41
Identity = 90/99 (90.91%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 4   GGSSLHPQGGVRVPTKPLLHWNFGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPS 63
           G S    +GGVRVPTKPLLHWNFGTRRARLVV PIRGRNWCFSRSIDLAASDS STQIPS
Sbjct: 41  GISDYVTEGGVRVPTKPLLHWNFGTRRARLVVLPIRGRNWCFSRSIDLAASDSDSTQIPS 100

Query: 64  TLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK 103
           TLKDLWTKIPSSSSSKSD LSRSTGRSNAEIVTDFISFK
Sbjct: 101 TLKDLWTKIPSSSSSKSDALSRSTGRSNAEIVTDFISFK 139

[Close]

BLAST of Carg18942 vs. NCBI nr
Match: XP_023548427.1 (uncharacterized protein LOC111807082 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.0 bits (445), Expect = 8.1e-41
Identity = 97/137 (70.80%), Postives = 98/137 (71.53%), Query Frame = 0


Query: 1   MGCGGSSLHP-----------------------------------QGGVRVPTKPLLHWN 60
           MGCGGSSLHP                                   +GGVRVPTKPLLHWN
Sbjct: 1   MGCGGSSLHPRSCIRVRVRVLSTFXXXXXXGSEKPICLGISVYVTEGGVRVPTKPLLHWN 60

Query: 61  FGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSR 103
           FGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQI STLKDL TKIPSSSSSKSD LSR
Sbjct: 61  FGTRRARLVVFPIRGRNWCFSRSIDLAASDSASTQILSTLKDLLTKIPSSSSSKSDALSR 120

[Close]

BLAST of Carg18942 vs. NCBI nr
Match: XP_022964630.1 (uncharacterized protein LOC111464584 [Cucurbita moschata])

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 59/73 (80.82%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 30  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGR 89
           RARLVVFPIRGRNWCFSRS+D AASDSASTQ PSTLKDLWTKI S SSSKSD        
Sbjct: 2   RARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDAXXXXXXX 61

Query: 90  SNAEIVTDFISFK 103
            NAEIVTDFISFK
Sbjct: 62  XNAEIVTDFISFK 74

[Close]

BLAST of Carg18942 vs. NCBI nr
Match: XP_023000133.1 (uncharacterized protein LOC111494421 [Cucurbita maxima] >XP_023513567.1 uncharacterized protein LOC111778134 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 59/73 (80.82%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 30  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGR 89
           RARLVVFPIRGRNWCFSRS+D AASDSASTQ PSTLKDLWTKI S SSSKSD        
Sbjct: 2   RARLVVFPIRGRNWCFSRSVDPAASDSASTQTPSTLKDLWTKISSPSSSKSDAXXXXXXX 61

Query: 90  SNAEIVTDFISFK 103
            NAEIVTDFISFK
Sbjct: 62  XNAEIVTDFISFK 74

[Close]

BLAST of Carg18942 vs. TAIR10
Match: AT1G53760.1 (unknown protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-11
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 30  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGR 89
           RARLVVFPI+G+ WCFSRS+D  A+ S S   P+T++ LW KI S S   +         
Sbjct: 2   RARLVVFPIKGKKWCFSRSVDPFAAQSPSGVTPTTVRGLWKKISSESKPIN--------- 61

Query: 90  SNAEIVTDFISFK 103
           +NAE++ DFIS K
Sbjct: 62  ANAELLVDFISDK 65

[Close]

BLAST of Carg18942 vs. TrEMBL
Match: tr|A0A1S3CGF0|A0A1S3CGF0_CUCME (uncharacterized protein LOC103500639 OS=Cucumis melo OX=3656 GN=LOC103500639 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.2e-20
Identity = 58/74 (78.38%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 30  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKI-PSSSSSKSDVLSRSTG 89
           RARLVVFPIRGRNWCFSRSID   SDSAS Q PST KDLWTKI  SSSSSKS  LS +  
Sbjct: 2   RARLVVFPIRGRNWCFSRSIDPTVSDSASAQTPSTFKDLWTKISSSSSSSKSGALSIANA 61

Query: 90  RSNAEIVTDFISFK 103
            +NAEIVTDFISFK
Sbjct: 62  SNNAEIVTDFISFK 75

[Close]

BLAST of Carg18942 vs. TrEMBL
Match: tr|A0A0A0K9A3|A0A0A0K9A3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447960 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-15
Identity = 56/104 (53.85%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 30  RARLVVFPIRGRNWCFSRSI-------------------------------DLAASDSAS 89
           RARLVVFPIRGRNWCFSRSI                                   SDS+S
Sbjct: 2   RARLVVFPIRGRNWCFSRSIKHFLHWNFGTXXXXXXXXXXXXXXXXXXXXXXPTVSDSSS 61

Query: 90  TQIPSTLKDLWTKIPSSSSSKSDVLSRSTGRSNAEIVTDFISFK 103
            Q PST KDLWTKI SSSSSKSD LS +   +NAEIVTDFIS K
Sbjct: 62  AQTPSTFKDLWTKISSSSSSKSDALSIANASNNAEIVTDFISSK 105

[Close]

BLAST of Carg18942 vs. TrEMBL
Match: tr|M5WUU5|M5WUU5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G030200 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 30  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGR 89
           RAR++VFP+RGRNWCFSRSI+   SDSAS  IPSTLKDLW K+  SS++ ++  +     
Sbjct: 2   RARVIVFPVRGRNWCFSRSIEPLVSDSAS-HIPSTLKDLWKKLSFSSNTNANPFA----- 61

Query: 90  SNAEIVTDFISFK 103
           +NAE++ DF+S K
Sbjct: 62  ANAELLVDFVSTK 68

[Close]

BLAST of Carg18942 vs. TrEMBL
Match: tr|K4C744|K4C744_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101249930 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-11
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 30  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGR 89
           +ARLVVFPIRGRNWCFSRSI+ + S++ S+  PSTLKDLW +I S S       SR +  
Sbjct: 2   KARLVVFPIRGRNWCFSRSIEASQSEAQSSSAPSTLKDLWKRISSKS-------SRDSPG 61

Query: 90  SNAEIVTDFISFK 103
           +N E+V DF S K
Sbjct: 62  ANIEVVVDFASDK 67

[Close]

BLAST of Carg18942 vs. TrEMBL
Match: tr|A0A0V0HZC5|A0A0V0HZC5_SOLCH (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.6e-11
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 30  RARLVVFPIRGRNWCFSRSIDLAASDSASTQIPSTLKDLWTKIPSSSSSKSDVLSRSTGR 89
           +ARLVVFPIRGRNWCFSRSI+ + S++ S+  PSTLKDLW KI S SS  S         
Sbjct: 2   KARLVVFPIRGRNWCFSRSIESSQSEAQSSNTPSTLKDLWKKISSKSSHDSPA------- 61

Query: 90  SNAEIVTDFISFK 103
           +N E+V DF S K
Sbjct: 62  ANIEVVVDFASDK 67

The following BLAST results are available for this feature:

BLAST of Carg18942 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953932.1	7.3e-42	90.10	uncharacterized protein LOC111456340 [Cucurbita moschata]	[more]
XP_022991797.1	3.6e-41	90.91	uncharacterized protein LOC111488336 [Cucurbita maxima]	[more]
XP_023548427.1	8.1e-41	70.80	uncharacterized protein LOC111807082 [Cucurbita pepo subsp. pepo]	[more]
XP_022964630.1	1.1e-21	80.82	uncharacterized protein LOC111464584 [Cucurbita moschata]	[more]
XP_023000133.1	1.1e-21	80.82	uncharacterized protein LOC111494421 [Cucurbita maxima] >XP_023513567.1 uncharac...	[more]

BLAST of Carg18942 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53760.1	3.7e-11	49.32	unknown protein	[more]

BLAST of Carg18942 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18942 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CGF0\|A0A1S3CGF0_CUCME	5.2e-20	78.38	uncharacterized protein LOC103500639 OS=Cucumis melo OX=3656 GN=LOC103500639 PE=...	[more]
tr\|A0A0A0K9A3\|A0A0A0K9A3_CUCSA	3.0e-15	53.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447960 PE=4 SV=1	[more]
tr\|M5WUU5\|M5WUU5_PRUPE	1.5e-11	56.16	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G030200 PE=4 SV=1	[more]
tr\|K4C744\|K4C744_SOLLC	2.0e-11	56.16	Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101249930 PE=4 SV=1	[more]
tr\|A0A0V0HZC5\|A0A0V0HZC5_SOLCH	2.6e-11	57.53	Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18942-RA	Carg18942-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18942	Cla015502	Watermelon (97103) v1	carwmB0763
Carg18942	Csa7G447960	Cucumber (Chinese Long) v2	carcuB0787
Carg18942	MELO3C024303	Melon (DHL92) v3.5.1	carmeB0762
Carg18942	ClCG09G001430	Watermelon (Charleston Gray)	carwcgB0741
Carg18942	CSPI07G22010	Wild cucumber (PI 183967)	carcpiB0805
Carg18942	Cucsa.359750	Cucumber (Gy14) v1	carcgyB0869
Carg18942	CmaCh08G008360	Cucurbita maxima (Rimu)	carcmaB1064
Carg18942	CmaCh17G006450	Cucurbita maxima (Rimu)	carcmaB1063
Carg18942	CmoCh08G008070	Cucurbita moschata (Rifu)	carcmoB1039
Carg18942	CmoCh17G006270	Cucurbita moschata (Rifu)	carcmoB1037
Carg18942	Lsi02G028510	Bottle gourd (USVL1VR-Ls)	carlsiB704
Carg18942	Cp4.1LG12g09580	Cucurbita pepo (Zucchini)	carcpeB1075
Carg18942	Cp4.1LG17g04310	Cucurbita pepo (Zucchini)	carcpeB1076
Carg18942	CsGy7G020300	Cucumber (Gy14) v2	carcgybB0764
Carg18942	MELO3C024303.2	Melon (DHL92) v3.6.1	carmedB0776
Carg18942	CsaV3_7G033900	Cucumber (Chinese Long) v3	carcucB0808
Carg18942	Cla97C09G163540	Watermelon (97103) v2	carwmbB0802
Carg18942	Bhi09G000202	Wax gourd	carwgoB0901

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18942	Carg13896	Silver-seed gourd	carcarB540

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18942	Silver-seed gourd	carcarB144
Carg18942	Cucumber (Gy14) v2	carcgybB0762
Carg18942	Cucumber (Gy14) v1	carcgyB0868
Carg18942	Cucurbita maxima (Rimu)	carcmaB1062
Carg18942	Cucurbita moschata (Rifu)	carcmoB1036
Carg18942	Cucurbita moschata (Rifu)	carcmoB1038
Carg18942	Cucurbita pepo (Zucchini)	carcpeB1077
Carg18942	Wild cucumber (PI 183967)	carcpiB0803
Carg18942	Cucumber (Chinese Long) v3	carcucB0806
Carg18942	Bottle gourd (USVL1VR-Ls)	carlsiB705
Carg18942	Watermelon (Charleston Gray)	carwcgB0743
Carg18942	Watermelon (97103) v1	carwmB0764
Carg18942	Watermelon (97103) v2	carwmbB0801
Carg18942	Wax gourd	carwgoB0900