Carg18914 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18914
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding ASCH domain protein
Location	Cucurbita_argyrosperma_scaffold_086 : 110232 .. 110736 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATACGATTGTTCACTTGATAGCTCATAGTTGCTGGTTGAATATTCATATGGTTGCACCACATGGAATAGTCTTTGAGATAAGGATAGCAGAAGGGTACGGTGCCAGGTGGTCGAACGATGGAAACAAGGTATCGTTATTATACGAGGCCCCGTTCTCTTATTTATAGATCTGGAAGTAATTGATATATACCAACTCAATTTGTTGCATATTACTTGATTTCACTGTTTTCTGCCCCTCTCTCTATCGGTCGGGCTGCATCACCCCTCTCCTCTTTGAGTTGATCTCCTTACTCCCTCTCCTCTTCTCCTCTCGCTATTTATGCTTACTCCCTCTCCTATATTACAACAATAAAGAATTGTTTGCGGAATGATAGTTTTTCCCTGGAGAAAGTTGAGTATTTGGGAGATTACAGTGTTGCTGTACTTTTTGCATCATTTCAGTTCATTGGATTTCTAGAACCATACATGGAAGATGGGCATTGGAAGAGATGGAAGCACTAA

mRNA sequence

ATGAATACGATTGTTCACTTGATAGCTCATAGTTGCTGGTTGAATATTCATATGGTTGCACCACATGGAATAGTCTTTGAGATAAGGATAGCAGAAGGGTACGGTGCCAGTTTTTCCCTGGAGAAAGTTGAGTATTTGGGAGATTACAGTGTTGCTGTACTTTTTGCATCATTTCAGTTCATTGGATTTCTAGAACCATACATGGAAGATGGGCATTGGAAGAGATGGAAGCACTAA

Coding sequence (CDS)

ATGAATACGATTGTTCACTTGATAGCTCATAGTTGCTGGTTGAATATTCATATGGTTGCACCACATGGAATAGTCTTTGAGATAAGGATAGCAGAAGGGTACGGTGCCAGTTTTTCCCTGGAGAAAGTTGAGTATTTGGGAGATTACAGTGTTGCTGTACTTTTTGCATCATTTCAGTTCATTGGATTTCTAGAACCATACATGGAAGATGGGCATTGGAAGAGATGGAAGCACTAA

Protein sequence

MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGASFSLEKVEYLGDYSVAVLFASFQFIGFLEPYMEDGHWKRWKH

Homology

[Close]

BLAST of Carg18914 vs. NCBI nr
Match: XP_022953537.1 (uncharacterized protein LOC111456052 isoform X4 [Cucurbita moschata])

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-23
Identity = 56/78 (71.79%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1   MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGASFSLEKVEYLGDYSVAVLFASFQF 60
           MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGA +S +                 +F
Sbjct: 320 MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGARWSND---------------GNKF 379

Query: 61  IGFLEPYMEDGHWKRWKH 79
           IGFLEPYMEDGHWKRWKH
Sbjct: 380 IGFLEPYMEDGHWKRWKH 382

[Close]

BLAST of Carg18914 vs. NCBI nr
Match: XP_022953535.1 (uncharacterized protein LOC111456052 isoform X2 [Cucurbita moschata])

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-23
Identity = 56/78 (71.79%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1   MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGASFSLEKVEYLGDYSVAVLFASFQF 60
           MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGA +S +                 +F
Sbjct: 339 MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGARWSND---------------GNKF 398

Query: 61  IGFLEPYMEDGHWKRWKH 79
           IGFLEPYMEDGHWKRWKH
Sbjct: 399 IGFLEPYMEDGHWKRWKH 401

[Close]

BLAST of Carg18914 vs. NCBI nr
Match: XP_022953536.1 (uncharacterized protein LOC111456052 isoform X3 [Cucurbita moschata])

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-23
Identity = 56/78 (71.79%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1   MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGASFSLEKVEYLGDYSVAVLFASFQF 60
           MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGA +S +                 +F
Sbjct: 321 MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGARWSND---------------GNKF 380

Query: 61  IGFLEPYMEDGHWKRWKH 79
           IGFLEPYMEDGHWKRWKH
Sbjct: 381 IGFLEPYMEDGHWKRWKH 383

[Close]

BLAST of Carg18914 vs. NCBI nr
Match: XP_022953532.1 (uncharacterized protein LOC111456052 isoform X1 [Cucurbita moschata] >XP_022953533.1 uncharacterized protein LOC111456052 isoform X1 [Cucurbita moschata] >XP_022953534.1 uncharacterized protein LOC111456052 isoform X1 [Cucurbita moschata])

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-23
Identity = 56/78 (71.79%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1   MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGASFSLEKVEYLGDYSVAVLFASFQF 60
           MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGA +S +                 +F
Sbjct: 340 MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGARWSND---------------GNKF 399

Query: 61  IGFLEPYMEDGHWKRWKH 79
           IGFLEPYMEDGHWKRWKH
Sbjct: 400 IGFLEPYMEDGHWKRWKH 402

[Close]

BLAST of Carg18914 vs. NCBI nr
Match: XP_023548572.1 (uncharacterized protein LOC111807196 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-23
Identity = 56/78 (71.79%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1   MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGASFSLEKVEYLGDYSVAVLFASFQF 60
           MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGA +S +                 +F
Sbjct: 321 MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGARWSND---------------GNKF 380

Query: 61  IGFLEPYMEDGHWKRWKH 79
           IGFLEPYMEDGHWKRWKH
Sbjct: 381 IGFLEPYMEDGHWKRWKH 383

[Close]

BLAST of Carg18914 vs. TAIR10
Match: AT2G43465.1 (RNA-binding ASCH domain protein)

HSP 1 Score: 80.5 bits (197), Expect = 5.1e-16
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1   MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGASFSLEKVEYLGDYSVAVLFASFQF 60
           M+ I   I + CW+NIH+V PHG VFEIR+A+GYGA +S +                 +F
Sbjct: 326 MDIINRFIGNCCWMNIHIVPPHGEVFEIRVAQGYGARWSRD---------------GTKF 385

Query: 61  IGFLEPYMEDGHWKRWKH 79
           IGFLEPYMEDGH   WKH
Sbjct: 386 IGFLEPYMEDGHSMAWKH 388

[Close]

BLAST of Carg18914 vs. TrEMBL
Match: tr|A0A1S3CC15|A0A1S3CC15_CUCME (uncharacterized protein LOC103498964 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498964 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.7e-19
Identity = 50/78 (64.10%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 1   MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGASFSLEKVEYLGDYSVAVLFASFQF 60
           MNTIVHLIAH CW+NIH+VAPHGIVFEIRIA+GYGA +S +                 +F
Sbjct: 264 MNTIVHLIAHCCWMNIHIVAPHGIVFEIRIAQGYGARWSKD---------------GNKF 323

Query: 61  IGFLEPYMEDGHWKRWKH 79
           IGFLEPYMEDGH K WKH
Sbjct: 324 IGFLEPYMEDGHLKGWKH 326

[Close]

BLAST of Carg18914 vs. TrEMBL
Match: tr|A0A1S3CBK8|A0A1S3CBK8_CUCME (uncharacterized protein LOC103498964 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498964 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.7e-19
Identity = 50/78 (64.10%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 1   MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGASFSLEKVEYLGDYSVAVLFASFQF 60
           MNTIVHLIAH CW+NIH+VAPHGIVFEIRIA+GYGA +S +                 +F
Sbjct: 344 MNTIVHLIAHCCWMNIHIVAPHGIVFEIRIAQGYGARWSKD---------------GNKF 403

Query: 61  IGFLEPYMEDGHWKRWKH 79
           IGFLEPYMEDGH K WKH
Sbjct: 404 IGFLEPYMEDGHLKGWKH 406

[Close]

BLAST of Carg18914 vs. TrEMBL
Match: tr|A0A0A0KEV6|A0A0A0KEV6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G081760 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-18
Identity = 50/78 (64.10%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 1  MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGASFSLEKVEYLGDYSVAVLFASFQF 60
          MNTIVHLIA  CW+NIH+VAPHGIVFEIRIAEGYGA +S +                 +F
Sbjct: 19 MNTIVHLIAQCCWMNIHIVAPHGIVFEIRIAEGYGARWSKD---------------GNKF 78

Query: 61 IGFLEPYMEDGHWKRWKH 79
          IGFLEPYMEDGH K WKH
Sbjct: 79 IGFLEPYMEDGHLKGWKH 81

[Close]

BLAST of Carg18914 vs. TrEMBL
Match: tr|A0A151SUF0|A0A151SUF0_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_013832 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 1   MNTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGASFSLEKVEYLGDYSVAVLFASFQF 60
           M+ I  LIAH CWLN+H V PHG+VFEIR+A+GYGA ++ +                 +F
Sbjct: 335 MDVINRLIAHCCWLNVHTVPPHGVVFEIRVADGYGARWTED---------------GSKF 394

Query: 61  IGFLEPYMEDGHWKRWKH 79
           IGFLEPYM+DGH K WKH
Sbjct: 395 IGFLEPYMQDGHSKGWKH 397

[Close]

BLAST of Carg18914 vs. TrEMBL
Match: tr|A0A1S3VU26|A0A1S3VU26_VIGRR (uncharacterized protein LOC106778442 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106778442 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 41/77 (53.25%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 2   NTIVHLIAHSCWLNIHMVAPHGIVFEIRIAEGYGASFSLEKVEYLGDYSVAVLFASFQFI 61
           + I  LIAH CWLN+H V PHG+VFEIR+A+GYGA ++ +                 +FI
Sbjct: 339 DAINRLIAHCCWLNVHTVPPHGVVFEIRVADGYGARWNED---------------GSKFI 398

Query: 62  GFLEPYMEDGHWKRWKH 79
           GFLEPYMEDGH K WKH
Sbjct: 399 GFLEPYMEDGHSKGWKH 400

The following BLAST results are available for this feature:

BLAST of Carg18914 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953537.1	6.0e-23	71.79	uncharacterized protein LOC111456052 isoform X4 [Cucurbita moschata]	[more]
XP_022953535.1	6.0e-23	71.79	uncharacterized protein LOC111456052 isoform X2 [Cucurbita moschata]	[more]
XP_022953536.1	6.0e-23	71.79	uncharacterized protein LOC111456052 isoform X3 [Cucurbita moschata]	[more]
XP_022953532.1	6.0e-23	71.79	uncharacterized protein LOC111456052 isoform X1 [Cucurbita moschata] >XP_0229535...	[more]
XP_023548572.1	6.0e-23	71.79	uncharacterized protein LOC111807196 isoform X4 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18914 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43465.1	5.1e-16	50.00	RNA-binding ASCH domain protein	[more]

BLAST of Carg18914 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18914 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CC15\|A0A1S3CC15_CUCME	2.7e-19	64.10	uncharacterized protein LOC103498964 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CBK8\|A0A1S3CBK8_CUCME	2.7e-19	64.10	uncharacterized protein LOC103498964 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KEV6\|A0A0A0KEV6_CUCSA	1.0e-18	64.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G081760 PE=4 SV=1	[more]
tr\|A0A151SUF0\|A0A151SUF0_CAJCA	1.2e-14	52.56	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_013832 PE=4 SV=1	[more]
tr\|A0A1S3VU26\|A0A1S3VU26_VIGRR	1.5e-14	53.25	uncharacterized protein LOC106778442 isoform X2 OS=Vigna radiata var. radiata OX...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18914-RA	Carg18914-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34204	FAMILY NOT NAMED	coord: 2..78

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18914	Cucumber (Gy14) v2	carcgybB0763
Carg18914	Cucurbita maxima (Rimu)	carcmaB1063
Carg18914	Cucurbita moschata (Rifu)	carcmoB1037
Carg18914	Cucurbita pepo (Zucchini)	carcpeB1075
Carg18914	Wild cucumber (PI 183967)	carcpiB0804
Carg18914	Cucumber (Chinese Long) v2	carcuB0786
Carg18914	Cucumber (Chinese Long) v3	carcucB0807
Carg18914	Bottle gourd (USVL1VR-Ls)	carlsiB703
Carg18914	Melon (DHL92) v3.5.1	carmeB0761
Carg18914	Melon (DHL92) v3.6.1	carmedB0775
Carg18914	Watermelon (Charleston Gray)	carwcgB0742
Carg18914	Watermelon (97103) v1	carwmB0765
Carg18914	Watermelon (97103) v2	carwmbB0800