Carg18911 (gene) Silver-seed gourd

NameCarg18911
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionrRNA N-glycosidase
LocationCucurbita_argyrosperma_scaffold_086 : 75515 .. 76351 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAGACTCTCAGTGCTGTCTTTGCTAATTCTCACCATCTTCCATGAAGGCCACACTGCTGTAGGCGATAATCTCAGCTTCAGCTTGTCGGGTTCAAGTTCCAAATCTTACAGCAAATTCATTACATCTCTGAGGAACGCTCTTCCAAATGCTGGAAAGGTCTACAATATACCTCTATTACTTCCCACTCTCAAGGGCTCAGCACGCTACACACTAATGAAACTCTCCAACTATGAGGAGAAAACTATCACGGTGGCTATAGATGTAACCAACGTTTACATTATGGGGTATCTTGTCAATACAACATCCTACTTTTTCAACGAGCCCGCCGCTCAGTTAGCTTCTGAGTTCGTATTCCAAGGTACTAAGCACATTCTTCTTCCATACTCTGGCAATTACCAAAAGCTTCAAATTGCTGCAGACAAGGATAGAGATTCAATTCCTCTGGGATTCCTTGCCTTGGACACTGCAATTTCCGCTTTGTATCATTATGACACCAAAGCTGCTCCGGCGGCATTTCTCGTACTCATTCAGACCACTGCCGAGGCTTCAAGATTTAAATACATTGAGAAACAAATTATCGATAGAATTGGCAGAAACGAGGTGCCAAGTTTAGCAGCCATAAGTTTGGAAAGGTCTCTTCTGTCCAAACAAATTCAGATAGCGAACTCCAACAATGGAACATTTCAAACTCCTGTCAAGCTTATTAATGATAAAGGCCTTTCAGTGGAGGTTACTAACGTTAGCTCTCTTGTTGTAACCAATAACATCAAGCTGCTGCTAAACAAGCAAAATGTTGCAACTTTTAAGCCTGAAGCTATTACAATTCCTTAG

mRNA sequence

ATGAATAGACTCTCAGTGCTGTCTTTGCTAATTCTCACCATCTTCCATGAAGGCCACACTGCTGTAGGCGATAATCTCAGCTTCAGCTTGTCGGGTTCAAGTTCCAAATCTTACAGCAAATTCATTACATCTCTGAGGAACGCTCTTCCAAATGCTGGAAAGGTCTACAATATACCTCTATTACTTCCCACTCTCAAGGGCTCAGCACGCTACACACTAATGAAACTCTCCAACTATGAGGAGAAAACTATCACGGTGGCTATAGATGTAACCAACGTTTACATTATGGGGTATCTTGTCAATACAACATCCTACTTTTTCAACGAGCCCGCCGCTCAGTTAGCTTCTGAGTTCGTATTCCAAGGTACTAAGCACATTCTTCTTCCATACTCTGGCAATTACCAAAAGCTTCAAATTGCTGCAGACAAGGATAGAGATTCAATTCCTCTGGGATTCCTTGCCTTGGACACTGCAATTTCCGCTTTGTATCATTATGACACCAAAGCTGCTCCGGCGGCATTTCTCGTACTCATTCAGACCACTGCCGAGGCTTCAAGATTTAAATACATTGAGAAACAAATTATCGATAGAATTGGCAGAAACGAGGTGCCAAGTTTAGCAGCCATAAGTTTGGAAAGGTCTCTTCTGTCCAAACAAATTCAGATAGCGAACTCCAACAATGGAACATTTCAAACTCCTGTCAAGCTTATTAATGATAAAGGCCTTTCAGTGGAGGTTACTAACGTTAGCTCTCTTGTTGTAACCAATAACATCAAGCTGCTGCTAAACAAGCAAAATGTTGCAACTTTTAAGCCTGAAGCTATTACAATTCCTTAG

Coding sequence (CDS)

ATGAATAGACTCTCAGTGCTGTCTTTGCTAATTCTCACCATCTTCCATGAAGGCCACACTGCTGTAGGCGATAATCTCAGCTTCAGCTTGTCGGGTTCAAGTTCCAAATCTTACAGCAAATTCATTACATCTCTGAGGAACGCTCTTCCAAATGCTGGAAAGGTCTACAATATACCTCTATTACTTCCCACTCTCAAGGGCTCAGCACGCTACACACTAATGAAACTCTCCAACTATGAGGAGAAAACTATCACGGTGGCTATAGATGTAACCAACGTTTACATTATGGGGTATCTTGTCAATACAACATCCTACTTTTTCAACGAGCCCGCCGCTCAGTTAGCTTCTGAGTTCGTATTCCAAGGTACTAAGCACATTCTTCTTCCATACTCTGGCAATTACCAAAAGCTTCAAATTGCTGCAGACAAGGATAGAGATTCAATTCCTCTGGGATTCCTTGCCTTGGACACTGCAATTTCCGCTTTGTATCATTATGACACCAAAGCTGCTCCGGCGGCATTTCTCGTACTCATTCAGACCACTGCCGAGGCTTCAAGATTTAAATACATTGAGAAACAAATTATCGATAGAATTGGCAGAAACGAGGTGCCAAGTTTAGCAGCCATAAGTTTGGAAAGGTCTCTTCTGTCCAAACAAATTCAGATAGCGAACTCCAACAATGGAACATTTCAAACTCCTGTCAAGCTTATTAATGATAAAGGCCTTTCAGTGGAGGTTACTAACGTTAGCTCTCTTGTTGTAACCAATAACATCAAGCTGCTGCTAAACAAGCAAAATGTTGCAACTTTTAAGCCTGAAGCTATTACAATTCCTTAG

Protein sequence

MNRLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPLLLPTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVFQGTKHILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQTTAEASRFKYIEKQIIDRIGRNEVPSLAAISLERSLLSKQIQIANSNNGTFQTPVKLINDKGLSVEVTNVSSLVVTNNIKLLLNKQNVATFKPEAITIP
BLAST of Carg18911 vs. NCBI nr
Match: XP_023547652.1 (putative ribosome-inactivating protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 515.8 bits (1327), Expect = 9.3e-143
Identity = 275/280 (98.21%), Postives = 276/280 (98.57%), Query Frame = 0

Query: 1   MNRLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPL 60
           MNRLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPL
Sbjct: 1   MNRLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPL 60

Query: 61  LLPTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVF 120
           LLPTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVF
Sbjct: 61  LLPTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVF 120

Query: 121 QGTKHILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQT 180
           Q TKHILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQT
Sbjct: 121 QDTKHILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQT 180

Query: 181 TAEASRFKYIEKQIIDRIGRNEVPSLAAISLER--SLLSKQIQIANSNNGTFQTPVKLIN 240
           TAEASRFKYIEKQIIDRIGRNEVPSLAAISLE   SLLSKQIQIANSNNGTFQTPVKLIN
Sbjct: 181 TAEASRFKYIEKQIIDRIGRNEVPSLAAISLENEWSLLSKQIQIANSNNGTFQTPVKLIN 240

Query: 241 DKGLSVEVTNVSSLVVTNNIKLLLNKQNVATFKPEAITIP 279
           DKGLSVEVTNVSSLVVTNNIKLLLNKQNVATFKP+AITIP
Sbjct: 241 DKGLSVEVTNVSSLVVTNNIKLLLNKQNVATFKPQAITIP 280

BLAST of Carg18911 vs. NCBI nr
Match: XP_022953187.1 (putative ribosome-inactivating protein [Cucurbita moschata])

HSP 1 Score: 515.4 bits (1326), Expect = 1.2e-142
Identity = 275/280 (98.21%), Postives = 275/280 (98.21%), Query Frame = 0

Query: 1   MNRLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPL 60
           MNRLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPL
Sbjct: 1   MNRLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPL 60

Query: 61  LLPTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVF 120
           LLP LKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVF
Sbjct: 61  LLPNLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVF 120

Query: 121 QGTKHILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQT 180
           QGTKHILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQT
Sbjct: 121 QGTKHILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQT 180

Query: 181 TAEASRFKYIEKQIIDRIGRNEVPSLAAISLER--SLLSKQIQIANSNNGTFQTPVKLIN 240
           TAEASRFKYIEKQIIDRIGRNEVPSLAAISLE   SLLSKQIQIANSNNGTFQTPVKLIN
Sbjct: 181 TAEASRFKYIEKQIIDRIGRNEVPSLAAISLENEWSLLSKQIQIANSNNGTFQTPVKLIN 240

Query: 241 DKGLSVEVTNVSSLVVTNNIKLLLNKQNVATFKPEAITIP 279
           DKGLSVEVTNVSSLVVTNNIKLLLNKQNVAT KPEAITIP
Sbjct: 241 DKGLSVEVTNVSSLVVTNNIKLLLNKQNVATIKPEAITIP 280

BLAST of Carg18911 vs. NCBI nr
Match: Q9FRX4.1 (RecName: Full=Putative ribosome-inactivating protein; AltName: Full=rRNA N-glycosidase; Flags: Precursor >BAB19677.1 unnamed protein product [Cucumis ficifolius])

HSP 1 Score: 379.8 bits (974), Expect = 8.0e-102
Identity = 206/280 (73.57%), Postives = 236/280 (84.29%), Query Frame = 0

Query: 1   MNRLSVL-SLLILTIFHEGHTAVGD-NLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNI 60
           MNR SVL  L+IL+IFH   TA GD  + FSL GS+ KSYSKFITS+RNALPNAG +YNI
Sbjct: 1   MNRFSVLMCLVILSIFHGVPTAEGDVTVKFSLLGSNHKSYSKFITSMRNALPNAGDIYNI 60

Query: 61  PLLLPTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEF 120
           PLL+P++ GS RY LM+LSNYE  TIT+A+DVTNVYIMGYLVN TSYFFNE  AQLAS+F
Sbjct: 61  PLLVPSISGSRRYILMQLSNYEGNTITMAVDVTNVYIMGYLVNGTSYFFNETDAQLASKF 120

Query: 121 VFQGTKHILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLI 180
           VFQGTK I LPYSGNYQKLQ  A K+RDSIPLGF+ALD+AIS LY+YD+++AP AFLVLI
Sbjct: 121 VFQGTKSITLPYSGNYQKLQSVARKERDSIPLGFMALDSAISTLYYYDSRSAPIAFLVLI 180

Query: 181 QTTAEASRFKYIEKQIIDRIGRNEVPSLAAISLER--SLLSKQIQIANSNNGTFQTPVKL 240
           QTTAEA+R+KYIEKQIIDRI  ++VP LAAISLE   SLLSKQIQIA SNNG FQTPVK+
Sbjct: 181 QTTAEAARYKYIEKQIIDRISVSKVPDLAAISLENEWSLLSKQIQIAKSNNGQFQTPVKI 240

Query: 241 INDKGLSVEVTNVSSLVVTNNIKLLLNKQNVATFKPEAIT 277
           INDKG+  EVTNVSSLVVT NI LLLNK N+A+F+   I+
Sbjct: 241 INDKGILTEVTNVSSLVVTKNIMLLLNKLNIASFEDHVIS 280

BLAST of Carg18911 vs. NCBI nr
Match: CAA44230.1 (b-luffin [Luffa aegyptiaca] >ABY71834.1 ribosome-inactivating protein [Luffa acutangula])

HSP 1 Score: 334.7 bits (857), Expect = 2.9e-88
Identity = 181/272 (66.54%), Postives = 222/272 (81.62%), Query Frame = 0

Query: 1   MNRLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPL 60
           MNR + LSLLI+ I     T  G N+SFSLSG+ SKSYSKFIT+LR ALP+  KV NIPL
Sbjct: 1   MNRFTFLSLLIILIAF--FTVEGANVSFSLSGADSKSYSKFITALRKALPSKEKVSNIPL 60

Query: 61  LLPTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVF 120
           LLP+  G++RY LM+LSNY+ K IT+AIDVTNVYIMGYLVN+TSYFFNE  A+LAS++VF
Sbjct: 61  LLPSASGASRYILMQLSNYDAKAITMAIDVTNVYIMGYLVNSTSYFFNESDAKLASQYVF 120

Query: 121 QGTKHILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQT 180
           +G+  + LPYSGNY++LQ AA K R+ IPLGF A D+AI++L+HYD+ AA  AFLV+IQT
Sbjct: 121 KGSTIVTLPYSGNYERLQNAAGKVREKIPLGFRAFDSAITSLFHYDSTAAAGAFLVIIQT 180

Query: 181 TAEASRFKYIEKQIIDRIGRNEVPSLAAISLER--SLLSKQIQIANSNNGTFQTPVKLIN 240
           TAEASRFKYIE QII+RI +NEVPS AA+SLE   S LSKQIQ+A +NNG F+TPV +I+
Sbjct: 181 TAEASRFKYIEGQIIERIPKNEVPSPAALSLENEWSALSKQIQLAQTNNGAFRTPVVIID 240

Query: 241 DKGLSVEVTNVSSLVVTNNIKLLLNKQNVATF 271
           +KG  VE+ +V+S VVTNNIKLLLNKQN+A F
Sbjct: 241 NKGQRVEIKDVNSKVVTNNIKLLLNKQNIAAF 270

BLAST of Carg18911 vs. NCBI nr
Match: Q00465.1 (RecName: Full=Ribosome-inactivating protein luffin-alpha; AltName: Full=rRNA N-glycosidase; Flags: Precursor >CAA44229.1 a-luffin [Luffa aegyptiaca])

HSP 1 Score: 325.9 bits (834), Expect = 1.4e-85
Identity = 180/266 (67.67%), Postives = 214/266 (80.45%), Query Frame = 0

Query: 8   SLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPLLLPTLKG 67
           ++LIL IF    T   D + FSLSGSSS SYSKFI  LR ALP+ G VYNI LLL +  G
Sbjct: 5   TVLILAIFVAASTVEAD-VRFSLSGSSSTSYSKFIGDLRKALPSNGTVYNITLLLSSASG 64

Query: 68  SARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVFQGTKHIL 127
           ++RYTLM LSNY+ K ITVA+DVTNVYIMGYLVN+TSYFFNE  A+LAS++VF+G+  + 
Sbjct: 65  ASRYTLMTLSNYDGKAITVAVDVTNVYIMGYLVNSTSYFFNESDAKLASQYVFKGSTIVT 124

Query: 128 LPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQTTAEASRF 187
           LPYSGNY+KLQ AA K R+ IPLGF ALD+AI+ L+HYD+ AA AAFLV+IQTTAEASRF
Sbjct: 125 LPYSGNYEKLQTAAGKIREKIPLGFPALDSAITTLFHYDSTAAAAAFLVIIQTTAEASRF 184

Query: 188 KYIEKQIIDRIGRNEVPSLAAISLER--SLLSKQIQIANSNNGTFQTPVKLINDKGLSVE 247
           KYIE QII+RI +N+VPSLA ISLE   S LSKQIQ+A +NNGTF+TPV + +DKG  VE
Sbjct: 185 KYIEGQIIERISKNQVPSLATISLENEWSALSKQIQLAQTNNGTFKTPVVITDDKGQRVE 244

Query: 248 VTNVSSLVVTNNIKLLLN-KQNVATF 271
           +TNV+S VVT NI+LLLN KQNVA F
Sbjct: 245 ITNVTSKVVTKNIQLLLNYKQNVAAF 269

BLAST of Carg18911 vs. Swiss-Prot
Match: sp|Q9FRX4|RIP1_CUCFI (Putative ribosome-inactivating protein OS=Cucumis ficifolius OX=131071 PE=2 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.6e-104
Identity = 206/280 (73.57%), Postives = 236/280 (84.29%), Query Frame = 0

Query: 1   MNRLSVL-SLLILTIFHEGHTAVGD-NLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNI 60
           MNR SVL  L+IL+IFH   TA GD  + FSL GS+ KSYSKFITS+RNALPNAG +YNI
Sbjct: 1   MNRFSVLMCLVILSIFHGVPTAEGDVTVKFSLLGSNHKSYSKFITSMRNALPNAGDIYNI 60

Query: 61  PLLLPTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEF 120
           PLL+P++ GS RY LM+LSNYE  TIT+A+DVTNVYIMGYLVN TSYFFNE  AQLAS+F
Sbjct: 61  PLLVPSISGSRRYILMQLSNYEGNTITMAVDVTNVYIMGYLVNGTSYFFNETDAQLASKF 120

Query: 121 VFQGTKHILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLI 180
           VFQGTK I LPYSGNYQKLQ  A K+RDSIPLGF+ALD+AIS LY+YD+++AP AFLVLI
Sbjct: 121 VFQGTKSITLPYSGNYQKLQSVARKERDSIPLGFMALDSAISTLYYYDSRSAPIAFLVLI 180

Query: 181 QTTAEASRFKYIEKQIIDRIGRNEVPSLAAISLER--SLLSKQIQIANSNNGTFQTPVKL 240
           QTTAEA+R+KYIEKQIIDRI  ++VP LAAISLE   SLLSKQIQIA SNNG FQTPVK+
Sbjct: 181 QTTAEAARYKYIEKQIIDRISVSKVPDLAAISLENEWSLLSKQIQIAKSNNGQFQTPVKI 240

Query: 241 INDKGLSVEVTNVSSLVVTNNIKLLLNKQNVATFKPEAIT 277
           INDKG+  EVTNVSSLVVT NI LLLNK N+A+F+   I+
Sbjct: 241 INDKGILTEVTNVSSLVVTKNIMLLLNKLNIASFEDHVIS 280

BLAST of Carg18911 vs. Swiss-Prot
Match: sp|Q00465|RIPA_LUFAE (Ribosome-inactivating protein luffin-alpha OS=Luffa aegyptiaca OX=3670 PE=1 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 4.5e-88
Identity = 180/266 (67.67%), Postives = 214/266 (80.45%), Query Frame = 0

Query: 8   SLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPLLLPTLKG 67
           ++LIL IF    T   D + FSLSGSSS SYSKFI  LR ALP+ G VYNI LLL +  G
Sbjct: 5   TVLILAIFVAASTVEAD-VRFSLSGSSSTSYSKFIGDLRKALPSNGTVYNITLLLSSASG 64

Query: 68  SARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVFQGTKHIL 127
           ++RYTLM LSNY+ K ITVA+DVTNVYIMGYLVN+TSYFFNE  A+LAS++VF+G+  + 
Sbjct: 65  ASRYTLMTLSNYDGKAITVAVDVTNVYIMGYLVNSTSYFFNESDAKLASQYVFKGSTIVT 124

Query: 128 LPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQTTAEASRF 187
           LPYSGNY+KLQ AA K R+ IPLGF ALD+AI+ L+HYD+ AA AAFLV+IQTTAEASRF
Sbjct: 125 LPYSGNYEKLQTAAGKIREKIPLGFPALDSAITTLFHYDSTAAAAAFLVIIQTTAEASRF 184

Query: 188 KYIEKQIIDRIGRNEVPSLAAISLER--SLLSKQIQIANSNNGTFQTPVKLINDKGLSVE 247
           KYIE QII+RI +N+VPSLA ISLE   S LSKQIQ+A +NNGTF+TPV + +DKG  VE
Sbjct: 185 KYIEGQIIERISKNQVPSLATISLENEWSALSKQIQLAQTNNGTFKTPVVITDDKGQRVE 244

Query: 248 VTNVSSLVVTNNIKLLLN-KQNVATF 271
           +TNV+S VVT NI+LLLN KQNVA F
Sbjct: 245 ITNVTSKVVTKNIQLLLNYKQNVAAF 269

BLAST of Carg18911 vs. Swiss-Prot
Match: sp|P16094|RIP1_MOMCH (Ribosome-inactivating protein momordin I OS=Momordica charantia OX=3673 PE=1 SV=2)

HSP 1 Score: 317.0 bits (811), Expect = 2.1e-85
Identity = 174/271 (64.21%), Postives = 212/271 (78.23%), Query Frame = 0

Query: 1   MNRLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPL 60
           M+R SVLS LIL IF  G    GD +SF LSG+  +SY  FI  LRNALP   KVYNIPL
Sbjct: 1   MSRFSVLSFLILAIFLGGSIVKGD-VSFRLSGADPRSYGMFIKDLRNALPFREKVYNIPL 60

Query: 61  LLPTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVF 120
           LLP++ G+ RY LM L NY+ KTITVA+DVTNVYIMGYL +TTSYFFNEPAA+LAS++VF
Sbjct: 61  LLPSVSGAGRYLLMHLFNYDGKTITVAVDVTNVYIMGYLADTTSYFFNEPAAELASQYVF 120

Query: 121 QGTKH-ILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQ 180
           +  +  I LPYSGNY++LQIAA K R+ IP+G  ALD+AIS L HYD+ AA  A LVLIQ
Sbjct: 121 RDARRKITLPYSGNYERLQIAAGKPREKIPIGLPALDSAISTLLHYDSTAAAGALLVLIQ 180

Query: 181 TTAEASRFKYIEKQIIDRIGRNEVPSLAAISLERSL--LSKQIQIANSNNGTFQTPVKLI 240
           TTAEA+RFKYIE+QI +R  R+EVPSLA ISLE S   LSKQIQ+A  NNG F+TP+ L+
Sbjct: 181 TTAEAARFKYIEQQIQERAYRDEVPSLATISLENSWSGLSKQIQLAQGNNGIFRTPIVLV 240

Query: 241 NDKGLSVEVTNVSSLVVTNNIKLLLNKQNVA 269
           ++KG  V++TNV+S VVT+NI+LLLN +N+A
Sbjct: 241 DNKGNRVQITNVTSKVVTSNIQLLLNTRNIA 270

BLAST of Carg18911 vs. Swiss-Prot
Match: sp|P22851|RIPB_LUFAE (Ribosome-inactivating protein luffin-B OS=Luffa aegyptiaca OX=3670 PE=1 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 5.7e-83
Identity = 164/249 (65.86%), Postives = 207/249 (83.13%), Query Frame = 0

Query: 25  NLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPLLLPTLKGSARYTLMKLSNYEEKTI 84
           N+SFSLSG+ SKSYSKFIT+LR ALP+  KV NIPLLLP+  G++RY LM+LSNY+ K I
Sbjct: 2   NVSFSLSGADSKSYSKFITALRKALPSKEKVSNIPLLLPSASGASRYILMQLSNYDAKAI 61

Query: 85  TVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVFQGTKHILLPYSGNYQKLQIAADKD 144
           T+AIDVTNVYIMGYLVN+TSYF NE  A+LAS++VF+G+  + +PYSGNY++LQ AA K 
Sbjct: 62  TMAIDVTNVYIMGYLVNSTSYFANESDAKLASQYVFKGSTLVTIPYSGNYERLQNAAGKI 121

Query: 145 RDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQTTAEASRFKYIEKQIIDRIGRNEVP 204
           R+ IPLGF ALD+A+++++HYD+ AA AAFLV++QTTAEASRFKYIE QII+RI +NEVP
Sbjct: 122 REKIPLGFRALDSALTSIFHYDSTAAAAAFLVILQTTAEASRFKYIEGQIIERIPKNEVP 181

Query: 205 SLAAISLER---SLLSKQIQIANSNNGTFQTPVKLINDKGLSVEVTNVSSLVVTN--NIK 264
           S AA+SLE    SLLSKQIQ+A +NNG F+TPV +I++KG  VE+TN++S V     N K
Sbjct: 182 SPAALSLENEAWSLLSKQIQLAQTNNGAFRTPVVIIDNKGQRVEITNLASKVQIKDVNSK 241

Query: 265 LLLNKQNVA 269
           LLLNKQN+A
Sbjct: 242 LLLNKQNIA 250

BLAST of Carg18911 vs. Swiss-Prot
Match: sp|P84530|RIP_LUFAC (Ribosome-inactivating protein luffaculin 1 OS=Luffa acutangula OX=56866 PE=1 SV=2)

HSP 1 Score: 305.4 bits (781), Expect = 6.3e-82
Identity = 166/241 (68.88%), Postives = 197/241 (81.74%), Query Frame = 0

Query: 25  NLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPLLLPTLKGSARYTLMKLSNYEEKTI 84
           ++SFSLSGSSS SYSKFI +LR ALP+ G VYNI LLL +  G++RYTLMKLSNY+ K I
Sbjct: 1   DVSFSLSGSSSTSYSKFIGALRKALPSNGTVYNITLLLSSASGASRYTLMKLSNYDGKAI 60

Query: 85  TVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVFQGTKHILLPYSGNYQKLQIAADKD 144
           TVAIDVTNVYIMGYLVN+TSYFFNE  A+LAS++VF G+  + LPYSGNY+KLQ AA K 
Sbjct: 61  TVAIDVTNVYIMGYLVNSTSYFFNESDAKLASQYVFAGSTIVTLPYSGNYEKLQTAAGKI 120

Query: 145 RDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQTTAEASRFKYIEKQIIDRIGRNEVP 204
           R+ IPLGF ALD+AI+ L+HYD+ AA AAFLV+IQTTAE+SRFKYIE QII RI +N VP
Sbjct: 121 REKIPLGFPALDSAITTLFHYDSTAAAAAFLVIIQTTAESSRFKYIEGQIIMRISKNGVP 180

Query: 205 SLAAISLER--SLLSKQIQIANSNNGTFQTPVKLINDKGLSVEVTNVSSLVVTNNIKLLL 264
           SLA ISLE   S LSKQIQ+A +NNGTF+TPV +++  G  VE+ NV S VVT NI+LLL
Sbjct: 181 SLATISLENEWSALSKQIQLAQTNNGTFKTPVVIMDAGGQRVEIGNVGSKVVTKNIQLLL 240

BLAST of Carg18911 vs. TrEMBL
Match: tr|Q00980|Q00980_LUFAE (rRNA N-glycosidase OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.9e-88
Identity = 181/272 (66.54%), Postives = 222/272 (81.62%), Query Frame = 0

Query: 1   MNRLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPL 60
           MNR + LSLLI+ I     T  G N+SFSLSG+ SKSYSKFIT+LR ALP+  KV NIPL
Sbjct: 1   MNRFTFLSLLIILIAF--FTVEGANVSFSLSGADSKSYSKFITALRKALPSKEKVSNIPL 60

Query: 61  LLPTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVF 120
           LLP+  G++RY LM+LSNY+ K IT+AIDVTNVYIMGYLVN+TSYFFNE  A+LAS++VF
Sbjct: 61  LLPSASGASRYILMQLSNYDAKAITMAIDVTNVYIMGYLVNSTSYFFNESDAKLASQYVF 120

Query: 121 QGTKHILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQT 180
           +G+  + LPYSGNY++LQ AA K R+ IPLGF A D+AI++L+HYD+ AA  AFLV+IQT
Sbjct: 121 KGSTIVTLPYSGNYERLQNAAGKVREKIPLGFRAFDSAITSLFHYDSTAAAGAFLVIIQT 180

Query: 181 TAEASRFKYIEKQIIDRIGRNEVPSLAAISLER--SLLSKQIQIANSNNGTFQTPVKLIN 240
           TAEASRFKYIE QII+RI +NEVPS AA+SLE   S LSKQIQ+A +NNG F+TPV +I+
Sbjct: 181 TAEASRFKYIEGQIIERIPKNEVPSPAALSLENEWSALSKQIQLAQTNNGAFRTPVVIID 240

Query: 241 DKGLSVEVTNVSSLVVTNNIKLLLNKQNVATF 271
           +KG  VE+ +V+S VVTNNIKLLLNKQN+A F
Sbjct: 241 NKGQRVEIKDVNSKVVTNNIKLLLNKQNIAAF 270

BLAST of Carg18911 vs. TrEMBL
Match: tr|B0EVM6|B0EVM6_LUFAC (rRNA N-glycosidase OS=Luffa acutangula OX=56866 GN=RIPI PE=2 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.9e-88
Identity = 181/272 (66.54%), Postives = 222/272 (81.62%), Query Frame = 0

Query: 1   MNRLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPL 60
           MNR + LSLLI+ I     T  G N+SFSLSG+ SKSYSKFIT+LR ALP+  KV NIPL
Sbjct: 1   MNRFTFLSLLIILIAF--FTVEGANVSFSLSGADSKSYSKFITALRKALPSKEKVSNIPL 60

Query: 61  LLPTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVF 120
           LLP+  G++RY LM+LSNY+ K IT+AIDVTNVYIMGYLVN+TSYFFNE  A+LAS++VF
Sbjct: 61  LLPSASGASRYILMQLSNYDAKAITMAIDVTNVYIMGYLVNSTSYFFNESDAKLASQYVF 120

Query: 121 QGTKHILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQT 180
           +G+  + LPYSGNY++LQ AA K R+ IPLGF A D+AI++L+HYD+ AA  AFLV+IQT
Sbjct: 121 KGSTIVTLPYSGNYERLQNAAGKVREKIPLGFRAFDSAITSLFHYDSTAAAGAFLVIIQT 180

Query: 181 TAEASRFKYIEKQIIDRIGRNEVPSLAAISLER--SLLSKQIQIANSNNGTFQTPVKLIN 240
           TAEASRFKYIE QII+RI +NEVPS AA+SLE   S LSKQIQ+A +NNG F+TPV +I+
Sbjct: 181 TAEASRFKYIEGQIIERIPKNEVPSPAALSLENEWSALSKQIQLAQTNNGAFRTPVVIID 240

Query: 241 DKGLSVEVTNVSSLVVTNNIKLLLNKQNVATF 271
           +KG  VE+ +V+S VVTNNIKLLLNKQN+A F
Sbjct: 241 NKGQRVEIKDVNSKVVTNNIKLLLNKQNIAAF 270

BLAST of Carg18911 vs. TrEMBL
Match: tr|S6CNX5|S6CNX5_MOMCH (Ribosome inactivating protein (Fragment) OS=Momordica charantia OX=3673 GN=rip PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.2e-83
Identity = 174/269 (64.68%), Postives = 211/269 (78.44%), Query Frame = 0

Query: 3   RLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPLLL 62
           R SVLS LIL IF  G    GD +SF LSG+  +SY  FI  LRNALP   KVYNIPLLL
Sbjct: 1   RFSVLSFLILAIFLGGSIVKGD-VSFRLSGADPRSYGMFIKDLRNALPFREKVYNIPLLL 60

Query: 63  PTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVFQG 122
           P++ G+ RY LM L NY+ KTITVA+DVTNVYIMGYL +TTSYFFNEPAA+LAS++VF+ 
Sbjct: 61  PSVSGAGRYLLMHLFNYDGKTITVAVDVTNVYIMGYLADTTSYFFNEPAAELASQYVFRD 120

Query: 123 TKH-ILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQTT 182
            +  I LPYSGNY++LQIAA K R+ IP+G LALD+AIS L HYD+ AA  A LVLIQTT
Sbjct: 121 ARRKITLPYSGNYERLQIAAGKPREKIPIGLLALDSAISTLLHYDSTAAAGALLVLIQTT 180

Query: 183 AEASRFKYIEKQIIDRIGRNEVPSLAAISLERSL--LSKQIQIANSNNGTFQTPVKLIND 242
           AEA+RFKYIE+QI +R  R+EVPSLA ISLE S   LSKQIQ+A  NNG F+TP+ L+++
Sbjct: 181 AEAARFKYIEQQIQERAYRDEVPSLATISLENSWSGLSKQIQLAQGNNGIFRTPIVLVDN 240

Query: 243 KGLSVEVTNVSSLVVTNNIKLLLNKQNVA 269
           KG  V++TNV+S VVT+NI+LLLN +N+A
Sbjct: 241 KGNRVQITNVTSKVVTSNIQLLLNTRNIA 268

BLAST of Carg18911 vs. TrEMBL
Match: tr|S6CNH1|S6CNH1_MOMCH (Ribosome inactivating protein (Fragment) OS=Momordica charantia OX=3673 GN=rip PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 7.2e-83
Identity = 174/269 (64.68%), Postives = 210/269 (78.07%), Query Frame = 0

Query: 3   RLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPLLL 62
           R SVLS LIL IF  G    GD +SF LSG+  +SY  FI  LRNALP   KVYNIPLLL
Sbjct: 1   RFSVLSFLILAIFLGGSIVKGD-VSFRLSGADPRSYGMFIKDLRNALPFREKVYNIPLLL 60

Query: 63  PTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVFQG 122
           P++ G+ RY LM L NY+ KTITVA+DVTNVYIMGYL +TTSYFFNEPAA+LAS++VFQ 
Sbjct: 61  PSVSGAGRYLLMHLFNYDGKTITVAVDVTNVYIMGYLADTTSYFFNEPAAELASQYVFQD 120

Query: 123 TKH-ILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQTT 182
            +  I LPYSGNY++LQIAA K R+ IP+G  ALD+AIS L HYD+ AA  A LVLIQTT
Sbjct: 121 ARRKITLPYSGNYERLQIAAGKPREKIPIGLPALDSAISTLLHYDSTAAAGALLVLIQTT 180

Query: 183 AEASRFKYIEKQIIDRIGRNEVPSLAAISLERSL--LSKQIQIANSNNGTFQTPVKLIND 242
           AEA+RFKYIE+QI +R  R+EVPSLA ISLE S   LSKQIQ+A  NNG F+TP+ L+++
Sbjct: 181 AEAARFKYIEQQIQERAYRDEVPSLATISLENSWSGLSKQIQLAQGNNGIFRTPIVLVDN 240

Query: 243 KGLSVEVTNVSSLVVTNNIKLLLNKQNVA 269
           KG  V++TNV+S VVT+NI+LLLN +N+A
Sbjct: 241 KGNRVQITNVTSKVVTSNIQLLLNTRNIA 268

BLAST of Carg18911 vs. TrEMBL
Match: tr|S6CNX9|S6CNX9_MOMCH (Ribosome inactivating protein (Fragment) OS=Momordica charantia OX=3673 GN=rip PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.6e-82
Identity = 173/269 (64.31%), Postives = 210/269 (78.07%), Query Frame = 0

Query: 3   RLSVLSLLILTIFHEGHTAVGDNLSFSLSGSSSKSYSKFITSLRNALPNAGKVYNIPLLL 62
           R SVLS LIL IF  G    GD +SF LSG+  +SY  FI  LRNALP   KVYNIPLLL
Sbjct: 1   RFSVLSFLILAIFLGGSIVKGD-VSFRLSGADPRSYGMFIKDLRNALPFREKVYNIPLLL 60

Query: 63  PTLKGSARYTLMKLSNYEEKTITVAIDVTNVYIMGYLVNTTSYFFNEPAAQLASEFVFQG 122
           P++ G+ RY LM L NY+ KTITVA+DVTNVYIMGYL +TTSYFFNEPAA+LAS++VF+ 
Sbjct: 61  PSVSGAGRYLLMHLFNYDGKTITVAVDVTNVYIMGYLADTTSYFFNEPAAELASQYVFRD 120

Query: 123 TKH-ILLPYSGNYQKLQIAADKDRDSIPLGFLALDTAISALYHYDTKAAPAAFLVLIQTT 182
            +  I LPYSGNY++LQIAA K R+ IP+G  ALD+AIS L HYD+ AA  A LVLIQTT
Sbjct: 121 ARRKITLPYSGNYERLQIAAGKPREKIPIGLPALDSAISTLLHYDSTAAAGALLVLIQTT 180

Query: 183 AEASRFKYIEKQIIDRIGRNEVPSLAAISLERSL--LSKQIQIANSNNGTFQTPVKLIND 242
           AEA+RFKYIE+QI +R  R+EVPSLA ISLE S   LSKQIQ+A  NNG F+TP+ L+++
Sbjct: 181 AEAARFKYIEQQIQERAYRDEVPSLATISLENSWSGLSKQIQLAQGNNGIFRTPIVLVDN 240

Query: 243 KGLSVEVTNVSSLVVTNNIKLLLNKQNVA 269
           KG  V++TNV+S VVT+NI+LLLN +N+A
Sbjct: 241 KGSRVQITNVTSKVVTSNIQLLLNTRNIA 268

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023547652.19.3e-14398.21putative ribosome-inactivating protein [Cucurbita pepo subsp. pepo][more]
XP_022953187.11.2e-14298.21putative ribosome-inactivating protein [Cucurbita moschata][more]
Q9FRX4.18.0e-10273.57RecName: Full=Putative ribosome-inactivating protein; AltName: Full=rRNA N-glyco... [more]
CAA44230.12.9e-8866.54b-luffin [Luffa aegyptiaca] >ABY71834.1 ribosome-inactivating protein [Luffa acu... [more]
Q00465.11.4e-8567.67RecName: Full=Ribosome-inactivating protein luffin-alpha; AltName: Full=rRNA N-g... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
sp|Q9FRX4|RIP1_CUCFI2.6e-10473.57Putative ribosome-inactivating protein OS=Cucumis ficifolius OX=131071 PE=2 SV=1[more]
sp|Q00465|RIPA_LUFAE4.5e-8867.67Ribosome-inactivating protein luffin-alpha OS=Luffa aegyptiaca OX=3670 PE=1 SV=1[more]
sp|P16094|RIP1_MOMCH2.1e-8564.21Ribosome-inactivating protein momordin I OS=Momordica charantia OX=3673 PE=1 SV=... [more]
sp|P22851|RIPB_LUFAE5.7e-8365.86Ribosome-inactivating protein luffin-B OS=Luffa aegyptiaca OX=3670 PE=1 SV=1[more]
sp|P84530|RIP_LUFAC6.3e-8268.88Ribosome-inactivating protein luffaculin 1 OS=Luffa acutangula OX=56866 PE=1 SV=... [more]
Match NameE-valueIdentityDescription
tr|Q00980|Q00980_LUFAE1.9e-8866.54rRNA N-glycosidase OS=Luffa aegyptiaca OX=3670 PE=2 SV=1[more]
tr|B0EVM6|B0EVM6_LUFAC1.9e-8866.54rRNA N-glycosidase OS=Luffa acutangula OX=56866 GN=RIPI PE=2 SV=1[more]
tr|S6CNX5|S6CNX5_MOMCH3.2e-8364.68Ribosome inactivating protein (Fragment) OS=Momordica charantia OX=3673 GN=rip P... [more]
tr|S6CNH1|S6CNH1_MOMCH7.2e-8364.68Ribosome inactivating protein (Fragment) OS=Momordica charantia OX=3673 GN=rip P... [more]
tr|S6CNX9|S6CNX9_MOMCH1.6e-8264.31Ribosome inactivating protein (Fragment) OS=Momordica charantia OX=3673 GN=rip P... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0017148negative regulation of translation
Vocabulary: Molecular Function
TermDefinition
GO:0030598rRNA N-glycosylase activity
Vocabulary: INTERPRO
TermDefinition
IPR036041Ribosome-inact_prot_sf
IPR017988Ribosome_inactivat_prot_CS
IPR016138Ribosome_inactivat_prot_sub1
IPR001574Ribosome_inactivat_prot
IPR016139Ribosome_inactivat_prot_sub2
IPR017989Ribosome_inactivat_1/2
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017148 negative regulation of translation
cellular_component GO:0005575 cellular_component
molecular_function GO:0030598 rRNA N-glycosylase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18911-RACarg18911-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017989Ribosome-inactivating protein type 1/2PRINTSPR00396SHIGARICINcoord: 36..49
score: 46.43
coord: 83..98
score: 55.43
coord: 145..159
score: 50.7
coord: 174..194
score: 58.27
IPR016139Ribosome-inactivating protein, subdomain 2GENE3DG3DSA:4.10.470.10coord: 186..268
e-value: 9.1E-22
score: 78.8
IPR001574Ribosome-inactivating proteinPFAMPF00161RIPcoord: 34..203
e-value: 7.5E-28
score: 97.4
IPR016138Ribosome-inactivating protein, subdomain 1GENE3DG3DSA:3.40.420.10coord: 24..185
e-value: 6.6E-53
score: 180.6
IPR017988Ribosome-inactivating protein conserved sitePROSITEPS00275SHIGA_RICINcoord: 178..194
IPR036041Ribosome-inactivating protein superfamilySUPERFAMILYSSF56371Ribosome inactivating proteins (RIP)coord: 26..266

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None