Carg18875 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18875
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glycine-rich protein
Location	Cucurbita_argyrosperma_scaffold_162 : 224614 .. 225824 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTCGTCTTCTTTCCTTTCCCTAGAATGTCCATTTCAGCTGTTGCCGTCTTCTACCTTCTTACCTCTTGTTATTTGACCGGTAATGTAGCATTAAACCTACTACCACATATAATCTATATTTTATTAATAATGATCTAAATTATTTTTTTTTCAGGAAAAGGAGACGACGCCGAGGGTGTTGCATCCAGCGGTTTTGTTGGTTACGAGGATCCACCCGAGATTGTTGCCAAAGCATTACGATGCTTCAATGATAAATATGTACGTCACACATAGTCATAACTAATATATATCTTGACTAATTCAAATTATAAACCCAGGATCTTCCATTAAATTAACCAAAGTGGGATTCACTCCCAACAATCCTCCCCTCGAACAAAGTACACTATAAGCCTCTCCTGAGGCTTATGGAGCTCTTGAATAGCCTCTCCTTAATCGAGGCTCGACTCTTTTTTTTGAGCCCTCGAATAAAGTACACCTCTTGTTCGACACTTTAGTCACTTTTGACTACACTTTCGAAACTCACAACTCTTTGTTTTCTGACAACTTTTACATTTGACTGCATTTGGAGATGAAAATGAGAATAGAGTGGAAGTGTAGTTATAATAGATGGTAGATAATTTATTTATAAAATATTTTTATTCTTAAAATAACTAAACTTGAGATTAGGTTAAATGTTTAAATCGGTAAAAGTAATTCTTTTAGCATGGAATTTACCATGGAAGTAAAAACAGATATACAGCGCGTGTGAAGAATCGTATAGATTAAAGGCGAGTGGGAATGTGGAGGTCCCACTGGAAAAAACAGAAGAATACTGCAACGGGCCGTGTTTGGGTGAAACGCACTTAGTGCTTGATTGCATTGACGGCATTTTTAGCAATTTCTTGTTTTACAATAAGGCCACGTTGCAAGATGTTAGGGACACCATCCACGCTGGATGTGGCTATGGCCCTCAAAGAGGTTCTATTTTTCTCCTTCTATTTATTTAATTAAATTACAATTTCATCAATTAATTCATCTTTTTAATTTTGTATTCCATAATTATTTATATATATATATATTTTAACAACTAAAATTGTGTTGATGCAGGAAACTTCGACGTGTTGGAACACATAAGAGCTGAAACAGACAAAGCATGGAGGGCTTCGAATAAGACAGTTATTGGATTTAGCTTTATTATTTTGGGCCTTTTTAGCTTATTCCTTTGA

mRNA sequence

ATGGCTCTCGTCTTCTTTCCTTTCCCTAGAATGTCCATTTCAGCTGTTGCCGTCTTCTACCTTCTTACCTCTTGTTATTTGACCGGTAATATATACAGCGCGTGTGAAGAATCGTATAGATTAAAGGCGAGTGGGAATGTGGAGGTCCCACTGGAAAAAACAGAAGAATACTGCAACGGGCCGTGTTTGGGTGAAACGCACTTAGTGCTTGATTGCATTGACGGCATTTTTAGCAATTTCTTGTTTTACAATAAGGCCACGTTGCAAGATGTTAGGGACACCATCCACGCTGGATGTGGCTATGGCCCTCAAAGAGGAAACTTCGACGTGTTGGAACACATAAGAGCTGAAACAGACAAAGCATGGAGGGCTTCGAATAAGACAGTTATTGGATTTAGCTTTATTATTTTGGGCCTTTTTAGCTTATTCCTTTGA

Coding sequence (CDS)

ATGGCTCTCGTCTTCTTTCCTTTCCCTAGAATGTCCATTTCAGCTGTTGCCGTCTTCTACCTTCTTACCTCTTGTTATTTGACCGGTAATATATACAGCGCGTGTGAAGAATCGTATAGATTAAAGGCGAGTGGGAATGTGGAGGTCCCACTGGAAAAAACAGAAGAATACTGCAACGGGCCGTGTTTGGGTGAAACGCACTTAGTGCTTGATTGCATTGACGGCATTTTTAGCAATTTCTTGTTTTACAATAAGGCCACGTTGCAAGATGTTAGGGACACCATCCACGCTGGATGTGGCTATGGCCCTCAAAGAGGAAACTTCGACGTGTTGGAACACATAAGAGCTGAAACAGACAAAGCATGGAGGGCTTCGAATAAGACAGTTATTGGATTTAGCTTTATTATTTTGGGCCTTTTTAGCTTATTCCTTTGA

Protein sequence

MALVFFPFPRMSISAVAVFYLLTSCYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

Homology

[Close]

BLAST of Carg18875 vs. NCBI nr
Match: XP_022930500.1 (uncharacterized protein LOC111436937 [Cucurbita moschata])

HSP 1 Score: 277.3 bits (708), Expect = 2.9e-71
Identity = 142/177 (80.23%), Postives = 143/177 (80.79%), Query Frame = 0


Query: 1   MALVFFPFPRMSISAVAVFYLLTSCYLTGN------------------------------ 60
           MALVFFPFPRMSISAVAVFYLLTSCYLTG                               
Sbjct: 18  MALVFFPFPRMSISAVAVFYLLTSCYLTGKGDDAEGVASSGFVGYEDPPEIVAKALRCFN 77

Query: 61  ---IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKAT 120
              IYSACEESYRLKASGNVEVPLEKTEEYC+GPCLGETHLVLDCIDGIFSNFLFYNKAT
Sbjct: 78  DKYIYSACEESYRLKASGNVEVPLEKTEEYCSGPCLGETHLVLDCIDGIFSNFLFYNKAT 137

Query: 121 LQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL 145
           LQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
Sbjct: 138 LQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL 194

[Close]

BLAST of Carg18875 vs. NCBI nr
Match: XP_023000051.1 (uncharacterized protein LOC111494359 [Cucurbita maxima])

HSP 1 Score: 267.3 bits (682), Expect = 3.0e-68
Identity = 137/177 (77.40%), Postives = 140/177 (79.10%), Query Frame = 0


Query: 1   MALVFFPFPRMSISAVAVFYLLTSCYLTGN------------------------------ 60
           MALVFFPF R+SISAVAVFYLLTSCYL G                               
Sbjct: 18  MALVFFPFTRISISAVAVFYLLTSCYLYGKGDDAEGVASSGFVGYEDPPEIVAKALRCFN 77

Query: 61  ---IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKAT 120
              IYSACEESYRLKASGNVEVPLE+TEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKAT
Sbjct: 78  DKYIYSACEESYRLKASGNVEVPLERTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKAT 137

Query: 121 LQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL 145
           LQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNK VIGFSFIILG+FSLFL
Sbjct: 138 LQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKIVIGFSFIILGVFSLFL 194

[Close]

BLAST of Carg18875 vs. NCBI nr
Match: XP_023514279.1 (uncharacterized protein LOC111778597 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.9 bits (668), Expect = 1.3e-66
Identity = 135/177 (76.27%), Postives = 138/177 (77.97%), Query Frame = 0


Query: 1   MALVFFPFPRMSISAVAVFYLLTSCYLTGN------------------------------ 60
           M LVFFPFPR+SISAVA+FYLLTS YL G                               
Sbjct: 1   MPLVFFPFPRISISAVALFYLLTSSYLYGKGDDAEGVASSGFVGYEDPPEIVAKALLCFN 60

Query: 61  ---IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKAT 120
              IYSACEESYRLKASGNVEVPLE+TEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKAT
Sbjct: 61  DKYIYSACEESYRLKASGNVEVPLERTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKAT 120

Query: 121 LQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL 145
           LQDVRDTIHAGCGYGPQRGNFDVLEHIRAET KAWRASNKTVIGFSFIIL LFSLFL
Sbjct: 121 LQDVRDTIHAGCGYGPQRGNFDVLEHIRAETGKAWRASNKTVIGFSFIILSLFSLFL 177

[Close]

BLAST of Carg18875 vs. NCBI nr
Match: XP_008458378.1 (PREDICTED: uncharacterized protein LOC103497804 [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 2.5e-51
Identity = 110/177 (62.15%), Postives = 120/177 (67.80%), Query Frame = 0


Query: 1   MALVFFPFPRMSISAVAVFYLLT---------------------------------SCYL 60
           MAL F  + R+ +SA+ +FYLLT                                  C+ 
Sbjct: 20  MALFFLHYARVPLSAILLFYLLTYGCFYGKCDDFESGSTGGSVGFEDPPEIVAKALLCFN 79

Query: 61  TGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKAT 120
              IYSACEESYRLK SGN+EVPLEKTEEYCNGPCL ET LVLDCI+GIFSNFLFYN+AT
Sbjct: 80  DRYIYSACEESYRLKESGNLEVPLEKTEEYCNGPCLSETELVLDCINGIFSNFLFYNRAT 139

Query: 121 LQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL 145
           LQDVRDTIHAGCGYGPQRGNFDVLEHI AE   A RASN   +GFSF ILGLFSL L
Sbjct: 140 LQDVRDTIHAGCGYGPQRGNFDVLEHINAERGNACRASNMAALGFSFFILGLFSLLL 196

[Close]

BLAST of Carg18875 vs. NCBI nr
Match: XP_004150092.1 (PREDICTED: uncharacterized protein LOC101212342 [Cucumis sativus] >KGN47395.1 hypothetical protein Csa_6G311000 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 108/173 (62.43%), Postives = 117/173 (67.63%), Query Frame = 0


Query: 1   MALVFFPFPRMSISAVAVFYLLT-----------------------------SCYLTGNI 60
           MAL F  F R+ +SA+ +FYLLT                              C+    I
Sbjct: 1   MALFFLHFARVPLSAILLFYLLTYGKCDDFESGSTGSSVGFEDPPEIVAKALLCFNDRYI 60

Query: 61  YSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDV 120
           YSACEESYRLK SGN+EVPLEKTEEYCNGPCL ET LVLDCI GIFSNFLFYN+ATLQDV
Sbjct: 61  YSACEESYRLKESGNLEVPLEKTEEYCNGPCLSETELVLDCISGIFSNFLFYNRATLQDV 120

Query: 121 RDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL 145
           RDT+HAGCGYGPQRGNFDVLEHI AE   A RASN   +GFSF IL L SL L
Sbjct: 121 RDTVHAGCGYGPQRGNFDVLEHINAERGNACRASNMAALGFSFFILALLSLLL 173

[Close]

BLAST of Carg18875 vs. TAIR10
Match: AT5G49350.1 (Glycine-rich protein family)

HSP 1 Score: 121.7 bits (304), Expect = 3.7e-28
Identity = 48/97 (49.48%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 25  CYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYN 84
           C    +IY  C+ES+RL  +G++ +PL +TEE+C GPC  ETHL L+CI+ I  ++ F+N
Sbjct: 187 CLNEKHIYRECDESWRLTLNGDLNIPLGRTEEFCEGPCFSETHLALNCIEEIIHHYRFFN 246

Query: 85  KATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKA 122
           +AT+ D+R+T+ +GC YGP+RG F+VLEHI  E + A
Sbjct: 247 RATIHDIRETLKSGCSYGPERGVFNVLEHIEDEEENA 283

[Close]

BLAST of Carg18875 vs. TAIR10
Match: AT1G56320.1 (BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT5G49350.2))

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-21
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 25  CYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYN 84
           C+    +Y  C E++RL   G  +VP E+T+ +CNGPC  ET LVL CI+ + S+F+FYN
Sbjct: 46  CFNNNLLYRGCNEAFRLNQQGEFKVPPEETDRFCNGPCSAETELVLTCINSVMSDFVFYN 105

Query: 85  KATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL 144
           +AT +DVR+ +  GC     RGNF+V ++  A+     +A  K    F  ++LG   L L
Sbjct: 106 RATPRDVRNALRGGCSSSFTRGNFNVGDY--AQGLYFGKAGKKLPGLFIVLVLGFVPLIL 163

[Close]

BLAST of Carg18875 vs. TrEMBL
Match: tr|A0A1S3C8B8|A0A1S3C8B8_CUCME (uncharacterized protein LOC103497804 OS=Cucumis melo OX=3656 GN=LOC103497804 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.7e-51
Identity = 110/177 (62.15%), Postives = 120/177 (67.80%), Query Frame = 0


Query: 1   MALVFFPFPRMSISAVAVFYLLT---------------------------------SCYL 60
           MAL F  + R+ +SA+ +FYLLT                                  C+ 
Sbjct: 20  MALFFLHYARVPLSAILLFYLLTYGCFYGKCDDFESGSTGGSVGFEDPPEIVAKALLCFN 79

Query: 61  TGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKAT 120
              IYSACEESYRLK SGN+EVPLEKTEEYCNGPCL ET LVLDCI+GIFSNFLFYN+AT
Sbjct: 80  DRYIYSACEESYRLKESGNLEVPLEKTEEYCNGPCLSETELVLDCINGIFSNFLFYNRAT 139

Query: 121 LQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL 145
           LQDVRDTIHAGCGYGPQRGNFDVLEHI AE   A RASN   +GFSF ILGLFSL L
Sbjct: 140 LQDVRDTIHAGCGYGPQRGNFDVLEHINAERGNACRASNMAALGFSFFILGLFSLLL 196

[Close]

BLAST of Carg18875 vs. TrEMBL
Match: tr|A0A0A0KCE5|A0A0A0KCE5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G311000 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-50
Identity = 108/173 (62.43%), Postives = 117/173 (67.63%), Query Frame = 0


Query: 1   MALVFFPFPRMSISAVAVFYLLT-----------------------------SCYLTGNI 60
           MAL F  F R+ +SA+ +FYLLT                              C+    I
Sbjct: 1   MALFFLHFARVPLSAILLFYLLTYGKCDDFESGSTGSSVGFEDPPEIVAKALLCFNDRYI 60

Query: 61  YSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDV 120
           YSACEESYRLK SGN+EVPLEKTEEYCNGPCL ET LVLDCI GIFSNFLFYN+ATLQDV
Sbjct: 61  YSACEESYRLKESGNLEVPLEKTEEYCNGPCLSETELVLDCISGIFSNFLFYNRATLQDV 120

Query: 121 RDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL 145
           RDT+HAGCGYGPQRGNFDVLEHI AE   A RASN   +GFSF IL L SL L
Sbjct: 121 RDTVHAGCGYGPQRGNFDVLEHINAERGNACRASNMAALGFSFFILALLSLLL 173

[Close]

BLAST of Carg18875 vs. TrEMBL
Match: tr|M5XIV9|M5XIV9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa023758mg PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.8e-38
Identity = 77/120 (64.17%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 25  CYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYN 84
           C+    +YS+CEESYRL  SG+++VP  KT+EYCNGPCL ETHLVLDC+D I SNFLFYN
Sbjct: 33  CFNDKYVYSSCEESYRLNESGDLKVPAAKTDEYCNGPCLQETHLVLDCVDNILSNFLFYN 92

Query: 85  KATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASN-KTVIGFSFIILGLFSLF 144
           KAT+QDVRDTI AGCGYG +RG FDV EHI+AE  KA++A+N + +IG   +I+G   LF
Sbjct: 93  KATVQDVRDTIQAGCGYGEERGKFDVPEHIKAEGSKAYKAANYQILIGLVVMIMGNGLLF 152

[Close]

BLAST of Carg18875 vs. TrEMBL
Match: tr|A0A251QWG9|A0A251QWG9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G123300 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.8e-38
Identity = 77/120 (64.17%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 25  CYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYN 84
           C+    +YS+CEESYRL  SG+++VP  KT+EYCNGPCL ETHLVLDC+D I SNFLFYN
Sbjct: 59  CFNDKYVYSSCEESYRLNESGDLKVPAAKTDEYCNGPCLQETHLVLDCVDNILSNFLFYN 118

Query: 85  KATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASN-KTVIGFSFIILGLFSLF 144
           KAT+QDVRDTI AGCGYG +RG FDV EHI+AE  KA++A+N + +IG   +I+G   LF
Sbjct: 119 KATVQDVRDTIQAGCGYGEERGKFDVPEHIKAEGSKAYKAANYQILIGLVVMIMGNGLLF 178

[Close]

BLAST of Carg18875 vs. TrEMBL
Match: tr|A0A2P5F628|A0A2P5F628_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_111380 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.1e-38
Identity = 71/113 (62.83%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 25  CYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYN 84
           C+    IYS+CEESYRL  SGN++VP +KTE YC GPCL ETHLVL+CID I +NF+FYN
Sbjct: 56  CFNDKYIYSSCEESYRLTESGNLDVPPDKTEAYCGGPCLTETHLVLNCIDNILANFVFYN 115

Query: 85  KATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIIL 138
           +AT+QD+RDTIHAGCGYGP+RGNF+V   I AE +KA RA N+ ++GF  +++
Sbjct: 116 RATIQDIRDTIHAGCGYGPERGNFNVAGRIEAEENKAERAGNQILVGFGLMVV 168

The following BLAST results are available for this feature:

BLAST of Carg18875 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930500.1	2.9e-71	80.23	uncharacterized protein LOC111436937 [Cucurbita moschata]	[more]
XP_023000051.1	3.0e-68	77.40	uncharacterized protein LOC111494359 [Cucurbita maxima]	[more]
XP_023514279.1	1.3e-66	76.27	uncharacterized protein LOC111778597 [Cucurbita pepo subsp. pepo]	[more]
XP_008458378.1	2.5e-51	62.15	PREDICTED: uncharacterized protein LOC103497804 [Cucumis melo]	[more]
XP_004150092.1	1.6e-50	62.43	PREDICTED: uncharacterized protein LOC101212342 [Cucumis sativus] >KGN47395.1 hy...	[more]

BLAST of Carg18875 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49350.1	3.7e-28	49.48	Glycine-rich protein family	[more]
AT1G56320.1	1.5e-21	40.00	BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT...	[more]

BLAST of Carg18875 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18875 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C8B8\|A0A1S3C8B8_CUCME	1.7e-51	62.15	uncharacterized protein LOC103497804 OS=Cucumis melo OX=3656 GN=LOC103497804 PE=...	[more]
tr\|A0A0A0KCE5\|A0A0A0KCE5_CUCSA	1.1e-50	62.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G311000 PE=4 SV=1	[more]
tr\|M5XIV9\|M5XIV9_PRUPE	4.8e-38	64.17	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa023758mg PE=4 SV=1	[more]
tr\|A0A251QWG9\|A0A251QWG9_PRUPE	4.8e-38	64.17	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G123300 PE=4 SV=1	[more]
tr\|A0A2P5F628\|A0A2P5F628_9ROSA	8.1e-38	62.83	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_111380 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18875-RA	Carg18875-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34366:SF2	SUBFAMILY NOT NAMED	coord: 24..140
None	No IPR available	PANTHER	PTHR34366	FAMILY NOT NAMED	coord: 24..140

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18875	Csa6G311000	Cucumber (Chinese Long) v2	carcuB0724
Carg18875	ClCG06G004730	Watermelon (Charleston Gray)	carwcgB0681
Carg18875	CSPI06G17150	Wild cucumber (PI 183967)	carcpiB0739
Carg18875	Cucsa.325290	Cucumber (Gy14) v1	carcgyB0789
Carg18875	CmaCh08G012630	Cucurbita maxima (Rimu)	carcmaB0988
Carg18875	CmoCh08G012330	Cucurbita moschata (Rifu)	carcmoB0960
Carg18875	Lsi09G014730	Bottle gourd (USVL1VR-Ls)	carlsiB641
Carg18875	Cp4.1LG17g00390	Cucurbita pepo (Zucchini)	carcpeB0985
Carg18875	CsGy6G016620	Cucumber (Gy14) v2	carcgybB0701
Carg18875	CsaV3_6G022510	Cucumber (Chinese Long) v3	carcucB0742
Carg18875	Cla97C06G114190	Watermelon (97103) v2	carwmbB0735
Carg18875	Bhi12G001704	Wax gourd	carwgoB0826

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18875	Silver-seed gourd	carcarB085
Carg18875	Silver-seed gourd	carcarB316
Carg18875	Cucumber (Gy14) v2	carcgybB0700
Carg18875	Cucumber (Gy14) v1	carcgyB0788
Carg18875	Cucurbita maxima (Rimu)	carcmaB0984
Carg18875	Cucurbita maxima (Rimu)	carcmaB0985
Carg18875	Cucurbita maxima (Rimu)	carcmaB0987
Carg18875	Cucurbita moschata (Rifu)	carcmoB0957
Carg18875	Cucurbita moschata (Rifu)	carcmoB0958
Carg18875	Cucurbita pepo (Zucchini)	carcpeB0984
Carg18875	Cucurbita pepo (Zucchini)	carcpeB0986
Carg18875	Cucurbita pepo (Zucchini)	carcpeB0987
Carg18875	Wild cucumber (PI 183967)	carcpiB0738
Carg18875	Cucumber (Chinese Long) v2	carcuB0723
Carg18875	Cucumber (Chinese Long) v3	carcucB0741
Carg18875	Bottle gourd (USVL1VR-Ls)	carlsiB642
Carg18875	Melon (DHL92) v3.5.1	carmeB0700
Carg18875	Melon (DHL92) v3.5.1	carmeB0701
Carg18875	Melon (DHL92) v3.6.1	carmedB0713
Carg18875	Melon (DHL92) v3.6.1	carmedB0714
Carg18875	Watermelon (Charleston Gray)	carwcgB0680
Carg18875	Watermelon (97103) v1	carwmB0700
Carg18875	Watermelon (97103) v1	carwmB0701
Carg18875	Watermelon (97103) v2	carwmbB0733
Carg18875	Watermelon (97103) v2	carwmbB0734
Carg18875	Wax gourd	carwgoB0828