Carg18856 (gene) Silver-seed gourd

Overview
NameCarg18856
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_162 : 132203 .. 133331 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTGAGAGATGGAGAAATTAAGGCTCCTCAAGCTGACCAGGTGGCGGCTACCGCGAAGCCATCGGGTACGGCGGAGCAACCACCGTGGAAGATGAGAGAAAATCCGGTGGTGATCGTGAACCGCTGTCCCGTCGTCTCACCCTCCGGCGTAATCTCGATAACAGTCCTGCCTGGGAATATGCAAACCCAATATAGCATTTTTTTCGTCTAGAACAGGTGCTCGTAATGTAAATACATATAAATACAAGTACTTATCTGCAATATACATAAATATGTGAAGCTGTCAATCGTTTTCTTCTTGAATTGAACTATATTTAAATTGATAAACTTCGACTATTTTTATTTAGTTTAACTTACTTTTGTGTAGGTCTAATTTGTTGAACCAAGAATTTGCTACAAGTACTTATCTGCAATATACTCATGTGGCCAAGGATCAAAGTAGTATGACGTTGAGGTGAGACGAGCTAGTGTCGTTGTTGGGCATTCTTTAAAAGAGGAAGTTATGCTCTAGTGCAATTACATACCATTTTAATAAATAATATATAGAGGGTATTTTACGTATTGAGTCCATGTAATTTGTATATATGATACCTTAGCAAAAGATTTACCGAATCCCGATAAAGGGAGAACTAAAGTAAACGTGTAAGTTAGAATGTAAAGATGTCGATGGTAATGAGATATGCAACACTGTAACTTTACAATAAGAGATCTCACACGTCTATATATTGATCTTCGTCAGCGTTTCACCTTTGCTCTGCTCAATGTCACAATAGCACTTTCTAAACAGTGGACTAGTGATTGTGTGTGCTTGTTCTAATCCAATAAATAAGTAAACCGAAAAATCAAGCATACTATCTAACCTCAAATCTTATTCTGAGAGAAAGGTTTTAGAAAATCGAGAATTTATTTTGAAGTAAGTTAAATTAAACGAAGTCAATTGATAATAAAATACAATATTTGGTGGGAGAAGGTTTGATCACTACTTAATCCATTCAATCTTCCGGTTCGATTTAAAACTTGGGGGTCCGGATGCTCCCCACTCAACGATCCTTCTCCCAACTGGATCAATCGACCTCCAAAAGAGACGATACTCCTTGATGGCTGCGAATACGAGCACAGGCTGA

mRNA sequence

ATGTCTCTGAGAGATGGAGAAATTAAGGCTCCTCAAGCTGACCAGGTGGCGGCTACCGCGAAGCCATCGGGTACGGCGGAGCAACCACCGTGGAAGATGAGAGAAAATCCGGTGGTGATCGTGAACCGCTGTCCCGTCGTCTCACCCTCCGGCCAAAAGATTTACCGAATCCCGATAAAGGGAGAACTAAAGTTTGATCACTACTTAATCCATTCAATCTTCCGGTTCGATTTAAAACTTGGGGGTCCGGATGCTCCCCACTCAACGATCCTTCTCCCAACTGGATCAATCGACCTCCAAAAGAGACGATACTCCTTGATGGCTGCGAATACGAGCACAGGCTGA

Coding sequence (CDS)

ATGTCTCTGAGAGATGGAGAAATTAAGGCTCCTCAAGCTGACCAGGTGGCGGCTACCGCGAAGCCATCGGGTACGGCGGAGCAACCACCGTGGAAGATGAGAGAAAATCCGGTGGTGATCGTGAACCGCTGTCCCGTCGTCTCACCCTCCGGCCAAAAGATTTACCGAATCCCGATAAAGGGAGAACTAAAGTTTGATCACTACTTAATCCATTCAATCTTCCGGTTCGATTTAAAACTTGGGGGTCCGGATGCTCCCCACTCAACGATCCTTCTCCCAACTGGATCAATCGACCTCCAAAAGAGACGATACTCCTTGATGGCTGCGAATACGAGCACAGGCTGA

Protein sequence

MSLRDGEIKAPQADQVAATAKPSGTAEQPPWKMRENPVVIVNRCPVVSPSGQKIYRIPIKGELKFDHYLIHSIFRFDLKLGGPDAPHSTILLPTGSIDLQKRRYSLMAANTSTG
Homology
[Close]
BLAST of Carg18856 vs. NCBI nr
Match: XP_023514439.1 (multiple organellar RNA editing factor 3, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MSLRDGEIKAPQADQVAATAKPSGTAEQPPWKMRENPVVIVNRCPVVSPSG 52
          MSLRDGEIKAPQADQ AATAKPSGTAEQPPWKMRENPVVIVNRCPVVSPSG
Sbjct: 26 MSLRDGEIKAPQADQAAATAKPSGTAEQPPWKMRENPVVIVNRCPVVSPSG 76

The following BLAST results are available for this feature:
BLAST of Carg18856 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023514439.11.6e-1998.04multiple organellar RNA editing factor 3, mitochondrial-like [Cucurbita pepo sub... [more]
BLAST of Carg18856 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg18856 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg18856 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18856-RACarg18856-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18856CmaCh08G012400Cucurbita maxima (Rimu)carcmaB0988
Carg18856CmoCh08G012140Cucurbita moschata (Rifu)carcmoB0960
Carg18856Cp4.1LG17g00540Cucurbita pepo (Zucchini)carcpeB0985
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg18856Silver-seed gourdcarcarB085
Carg18856Silver-seed gourdcarcarB316
Carg18856Cucumber (Gy14) v2carcgybB0700
Carg18856Cucumber (Gy14) v2carcgybB0701
Carg18856Cucumber (Gy14) v1carcgyB0785
Carg18856Cucumber (Gy14) v1carcgyB0788
Carg18856Cucurbita maxima (Rimu)carcmaB0984
Carg18856Cucurbita maxima (Rimu)carcmaB0985
Carg18856Cucurbita moschata (Rifu)carcmoB0957
Carg18856Cucurbita moschata (Rifu)carcmoB0958
Carg18856Cucurbita pepo (Zucchini)carcpeB0984
Carg18856Cucurbita pepo (Zucchini)carcpeB0986
Carg18856Cucurbita pepo (Zucchini)carcpeB0987
Carg18856Wild cucumber (PI 183967)carcpiB0738
Carg18856Wild cucumber (PI 183967)carcpiB0739
Carg18856Cucumber (Chinese Long) v2carcuB0723
Carg18856Cucumber (Chinese Long) v2carcuB0724
Carg18856Cucumber (Chinese Long) v3carcucB0741
Carg18856Cucumber (Chinese Long) v3carcucB0742
Carg18856Bottle gourd (USVL1VR-Ls)carlsiB641
Carg18856Bottle gourd (USVL1VR-Ls)carlsiB642
Carg18856Melon (DHL92) v3.5.1carmeB0700
Carg18856Melon (DHL92) v3.5.1carmeB0701
Carg18856Melon (DHL92) v3.6.1carmedB0713
Carg18856Melon (DHL92) v3.6.1carmedB0714
Carg18856Watermelon (Charleston Gray)carwcgB0680
Carg18856Watermelon (Charleston Gray)carwcgB0681
Carg18856Watermelon (97103) v1carwmB0700
Carg18856Watermelon (97103) v1carwmB0701
Carg18856Watermelon (97103) v2carwmbB0734
Carg18856Watermelon (97103) v2carwmbB0735
Carg18856Wax gourdcarwgoB0827
Carg18856Wax gourdcarwgoB0828