Carg18813 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18813
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Coatomer, beta' subunit
Location	Cucurbita_argyrosperma_scaffold_123 : 371798 .. 374519 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACGGTCAAAACTGAAACTTTATTGTAGAATCGGTTGCACTGAGAAATTCCGGGAGGGGGGCGAATGGCATTATCGTAAATTTATGACGTAACTGCTAAGCTTCGATCTGCTCTCGCTTCCTTCTCATATTAACACGAAAGACTTCGTTGGTTCAATTCTGAAACCTCTCTCTCTACCCATTTATCTTCTTCAAGCTGCGATCACCTGGATCGCTCGGGTGCAACGATCGAGATCTCATTTCCTAAGCTCTCATTTGCTCACTATGGTGAGTTGAAGACTTTCTTCCATTTCTCTGAACAAATCTGCATTCAATTATAACTTAGATCTGGTTGAATTCTGCTACGATTCTGTCACAGTTCCTCACTTTTGTTGATATTGGCATTGCCTTCCGAGTTCTTCGATTATTCTCTTTGATAATTTGAGTGCGCGAGTTTGATTGGCTCTGCCTTTTCTTTGTTTGGGACATAGATACGGAATTGTTCTCTCCTTCTCTTTCTCTTAGATTTTATCAGAGAAGAAGGACCCTAGGATCTGGCATTCTAATGCTTGGTCCATGGAATTTGGCTGCTATTTCGCGGCTACTACTTAAACTTATTTTGTTATTATCTACGACTTCGAATCGTTATTGCTGCTACGAATTACTTATTTGTTTTTTGGTTGTTTGTGTATTCGCAGCCTCTCAGACTTGAAATCAAGGTATTCCGATTCTTCTGCGTGTTAAATGGATAGAATGTGTATAATTTTGATTATTTTTATTTCTTGTTATGTGTTATAAAATACGTTTTCTTATTATTTGGTTCAGAGGAAACTCGCTCAAAGATCGGAAAGGGTAAAATCTGTGGATTTGCATCCAACAGAACCATGGTAAGTTGGATAGGTGCTTATTAATACCGTATCTTGGCAATGCTACATCCTAGTCCATTATGAGCCGCTTAAAATTATGATAGATGTAAATGGTTTCCGTTATGTTAGAATATTGTAGTTCATGATCATTCGTTTCCCATCTGGTTTGGATCTTTGAGATTTCTTAGTTGATCATTTACCGAACTGTGATTATATTTATTTCTACTGCAAAAGAGATGAAGAAAACTTGAAGGTTCTGACACACACCTTACTGCAGGATTCTGGCCAGTTTGTATTCAGGAACTGTATGTATCTGGAACTATCAGTCTCAGGTATGGCTATGTTATCATTGATGAATACATGGATGCCTTTTGAACTTTTCTTTTTACGGAGGTACTTCAAAATTGTTTTCAAAACGAGACCTGATTTTTCTAATTACTAACTCAACCATATTTATCCATGAATTGTTGTATATCCCGAAGTTTGTTACACTATTTTCTTGATGATTCCATAATCTAGCCCAAAAGCTTCTCAGAGTAAGTATGACATGGTTTCATGAGTAAGATAATTGTCACCGTAAGTGGAACTTGTAAAACCTATGGTTTGCAGTTGGATTCTTTCTGTTTTTTCAAGTCTTCACATTTTTATTTGGAGAAGAAACTAAAACTTTATTTTTGAGCAGAAAAGCATATGGTAGTTATTGATCATCATTTGGTAGAAGAGAAGAGGAGTTCATTACACATATGTATTTATTCATTTATATTCATGAGTATTGTGGCTAGCTTGTGTGCACCTCAACTATTCTCACTGAACAACCACTTGACCTCAATAAATAATTATGTATTATAAGTAACGTTCACATATAACTTAGGTGGTCTTCCAAATTTTTATCATTTTCCTTTTTTCTCGATGACTTCTATGATTTATTTCTTTTTTCTTCCTTCATTTTCTTATAAGAACTTCTATGGGTTATAAGAATGATTTTTCACTTGGAGTTCTAGTTCGGACTTTGGTAGGTGCATGAAATGTGAATTTATGAAAATACCTCCTCTTCCATCTCTGAATTCTATAAATTCGTTGTCTAATTTTGTTAACTCTGAAATTATTTAAAAATTAAATGAATCCTCTGGCAACTTCTGCAGATTATGGTCAAGTCTTTTGAGGTGACGGAGTTACCAGGTAAGCAGTAAAGTCAATATGGAGAGATAGAGAAGTAAAGGTGAGTGGATGGAAGAATATGCTATGAAGTGTTTGTTGTGTGTTGACTGTGTTGGCAGTTAGGTCAGCCAAGTTTATCGTGCGGAAGCAATGGGTCGTTGCTGGAGCTGATGACATGTTCCTTCGTGTCTACAATTATAATACAATGGATAAAGTAAAAGTCTTTGAGGCTCATACAGATTACATTAGGTGTGTTGCGGTCCATCCTACGCTTCCATATGTTCTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAGGGTTGGGTGTGCACTCAAATTTTTGAGGGACATTCTCACTATGTGATGCAAGTAACATTTAATCCCAAGGATACTAACACCTTTGCAAGTGCTTCTCTTGACCGCACTATTAAGGTAATATTGAGAATTTTCTCATAGTGTAACTTCTTATCTGTTCCTAATCTGGATGGTGATGCTGAATGAAATTTGGGAAAATTTTTGTGGCAGATTTGGAATCTTGGCTCTCCCGATCCTAATTTTACATTGGATGCCCATCAGAAGGGAGTAAATTGTGTTGATTACTTTACTGGTGGTGACAAACCTTACCTAATTACTGGTTCTGACGATCACACTGCTAAGGTCTCCATTATTCTAATTCTTAACCTAACATTCACTGGTTCCAAATAG

mRNA sequence

ATTACGGTCAAAACTGAAACTTTATTGTAGAATCGGTTGCACTGAGAAATTCCGGGAGGGGGGCGAATGGCATTATCGTAAATTTATGACGTAACTGCTAAGCTTCGATCTGCTCTCGCTTCCTTCTCATATTAACACGAAAGACTTCGTTGGTTCAATTCTGAAACCTCTCTCTCTACCCATTTATCTTCTTCAAGCTGCGATCACCTGGATCGCTCGGGTGCAACGATCGAGATCTCATTTCCTAAGCTCTCATTTGCTCACTATGCCTCTCAGACTTGAAATCAAGAGGAAACTCGCTCAAAGATCGGAAAGGGTAAAATCTGTGGATTTGCATCCAACAGAACCATGGATTCTGGCCAGTTTGTATTCAGGAACTGTATGTATCTGGAACTATCAGTCTCAGATTATGGTCAAGTCTTTTGAGGTGACGGAGTTACCAGTTAGGTCAGCCAAGTTTATCGTGCGGAAGCAATGGGTCGTTGCTGGAGCTGATGACATGTTCCTTCGTGTCTACAATTATAATACAATGGATAAAGTAAAAGTCTTTGAGGCTCATACAGATTACATTAGGTGTGTTGCGGTCCATCCTACGCTTCCATATGTTCTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAGGGTTGGGTGTGCACTCAAATTTTTGAGGGACATTCTCACTATGTGATGCAAGTAACATTTAATCCCAAGGATACTAACACCTTTGCAAGTGCTTCTCTTGACCGCACTATTAAGATTTGGAATCTTGGCTCTCCCGATCCTAATTTTACATTGGATGCCCATCAGAAGGGAGTAAATTGTGTTGATTACTTTACTGGTGGTGACAAACCTTACCTAATTACTGGTTCTGACGATCACACTGCTAAGGTCTCCATTATTCTAATTCTTAACCTAACATTCACTGGTTCCAAATAG

Coding sequence (CDS)

ATGCCTCTCAGACTTGAAATCAAGAGGAAACTCGCTCAAAGATCGGAAAGGGTAAAATCTGTGGATTTGCATCCAACAGAACCATGGATTCTGGCCAGTTTGTATTCAGGAACTGTATGTATCTGGAACTATCAGTCTCAGATTATGGTCAAGTCTTTTGAGGTGACGGAGTTACCAGTTAGGTCAGCCAAGTTTATCGTGCGGAAGCAATGGGTCGTTGCTGGAGCTGATGACATGTTCCTTCGTGTCTACAATTATAATACAATGGATAAAGTAAAAGTCTTTGAGGCTCATACAGATTACATTAGGTGTGTTGCGGTCCATCCTACGCTTCCATATGTTCTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAGGGTTGGGTGTGCACTCAAATTTTTGAGGGACATTCTCACTATGTGATGCAAGTAACATTTAATCCCAAGGATACTAACACCTTTGCAAGTGCTTCTCTTGACCGCACTATTAAGATTTGGAATCTTGGCTCTCCCGATCCTAATTTTACATTGGATGCCCATCAGAAGGGAGTAAATTGTGTTGATTACTTTACTGGTGGTGACAAACCTTACCTAATTACTGGTTCTGACGATCACACTGCTAAGGTCTCCATTATTCTAATTCTTAACCTAACATTCACTGGTTCCAAATAG

Protein sequence

MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPVRSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVSIILILNLTFTGSK

Homology

[Close]

BLAST of Carg18813 vs. NCBI nr
Match: XP_022964510.1 (coatomer subunit beta'-2 isoform X1 [Cucurbita moschata] >XP_023514348.1 coatomer subunit beta'-2 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023514349.1 coatomer subunit beta'-2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.0 bits (754), Expect = 2.1e-76
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. NCBI nr
Match: XP_022964511.1 (coatomer subunit beta'-2 isoform X2 [Cucurbita moschata] >XP_023514350.1 coatomer subunit beta'-2 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.0 bits (754), Expect = 2.1e-76
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. NCBI nr
Match: XP_023000306.1 (coatomer subunit beta'-2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 295.0 bits (754), Expect = 2.1e-76
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. NCBI nr
Match: XP_023000305.1 (coatomer subunit beta'-2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 295.0 bits (754), Expect = 2.1e-76
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. NCBI nr
Match: XP_022992094.1 (coatomer subunit beta'-2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 292.7 bits (748), Expect = 1.0e-75
Identity = 210/213 (98.59%), Postives = 212/213 (99.53%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQSQIMVKSF+VTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQSQIMVKSFDVTELPV 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RSAKF XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RSAKFIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. TAIR10
Match: AT1G52360.2 (Coatomer, beta' subunit)

HSP 1 Score: 278.5 bits (711), Expect = 3.7e-75
Identity = 203/212 (95.75%), Postives = 206/212 (97.17%), Query Frame = 0


Query: 2   PLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPVR 61
           PLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQ+Q+M KSFEVTELPVR
Sbjct: 46  PLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPVR 105

Query: 62  SAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 106 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 165

Query: 122 XXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181
           XXXXXXXEKGW CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL
Sbjct: 166 XXXXXXXEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 225

Query: 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 226 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 257

[Close]

BLAST of Carg18813 vs. TAIR10
Match: AT1G79990.1 (structural molecules)

HSP 1 Score: 269.2 bits (687), Expect = 2.3e-72
Identity = 199/212 (93.87%), Postives = 203/212 (95.75%), Query Frame = 0


Query: 2   PLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPVR 61
           PLRLEIKRK AQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQ+Q MVKSF+VTELP  
Sbjct: 217 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPXX 276

Query: 62  SAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 277 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 336

Query: 122 XXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181
           XXXXXXXEKGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL
Sbjct: 337 XXXXXXXEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 396

Query: 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           DAH KGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 397 DAHLKGVNCVDYFTGGDKPYLITGSDDHTAKV 428

[Close]

BLAST of Carg18813 vs. TAIR10
Match: AT3G15980.5 (Coatomer, beta' subunit)

HSP 1 Score: 234.2 bits (596), Expect = 8.0e-62
Identity = 183/205 (89.27%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRL+IKRK AQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQ+Q + KS        
Sbjct: 1   MPLRLDIKRKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSXXXXXXXX 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXXE GW CTQIFEGHSHYVMQV FNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 XXXXXXXXENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITG 206
           LDAHQKGVNCVDYFTGGDKPYLITG
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITG 205

[Close]

BLAST of Carg18813 vs. TAIR10
Match: AT5G43920.1 (transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.1e-06
Identity = 28/78 (35.90%), Postives = 39/78 (50.00%), Query Frame = 0


Query: 138 FEGH--SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT 197
           F GH  S YV++  F   D++  AS S D  + IWNL +  P   L  H   VNCV +  
Sbjct: 436 FSGHRQSKYVIRSCFGGLDSSFIASGSEDSQVYIWNLKNTKPLEVLSGHSMTVNCVSWNP 495

Query: 198 GGDKPYLITGSDDHTAKV 214
              +  L + SDD T ++
Sbjct: 496 KNPR-MLASASDDQTIRI 512

[Close]

BLAST of Carg18813 vs. TAIR10
Match: AT5G42010.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 8.2e-06
Identity = 23/76 (30.26%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197
           F GH+  ++ ++++ K      S+S+D T+++W +GS D    + +H+  V CV  F   
Sbjct: 359 FRGHTGEILDLSWSEK--GFLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCV-AFNPV 418

Query: 198 DKPYLITGSDDHTAKV 214
           D  Y I+GS D   ++
Sbjct: 419 DDNYFISGSIDGKVRI 431

[Close]

BLAST of Carg18813 vs. Swiss-Prot
Match: sp|Q9C827|COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.8e-74
Identity = 204/213 (95.77%), Postives = 207/213 (97.18%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQ+Q+M KSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPV 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           R    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXXEKGW CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 XXXXXXXXEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. Swiss-Prot
Match: sp|Q9CAA0|COB21_ARATH (Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 271.2 bits (692), Expect = 1.1e-71
Identity = 200/213 (93.90%), Postives = 204/213 (95.77%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRK AQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQ+Q MVKSF+VTELP 
Sbjct: 1   MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPX 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXXEKGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 XXXXXXXXEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAH KGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. Swiss-Prot
Match: sp|Q6H8D5|COB22_ORYSJ (Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0209100 PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 7.9e-67
Identity = 187/202 (92.57%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRL+IKRKLAQRSERVKSVDLHPTEPWIL+SLYSG+VCIWNYQ+Q MVKSFEVTELPV
Sbjct: 1   MPLRLDIKRKLAQRSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RS+KF XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RSSKFIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXX+KGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT+K+W+LGSPDPNFT
Sbjct: 121 XXXXXXXXDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVWSLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYL 203
           LD H KGVNCVDYFTGGD+PYL
Sbjct: 181 LDGHSKGVNCVDYFTGGDRPYL 202

[Close]

BLAST of Carg18813 vs. Swiss-Prot
Match: sp|Q6H8D6|COB23_ORYSJ (Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0209000 PE=3 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 2.3e-66
Identity = 184/202 (91.09%), Postives = 195/202 (96.53%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRL+IKRKLAQRSER KSVDLHPTEPWIL+SLYSG+VCIWNYQ+Q MVKSFEVTELPV
Sbjct: 1   MPLRLDIKRKLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RS+KF   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RSSKFITRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXX+KGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT+K+W+LGSPDPNFT
Sbjct: 121 XXXXXXXXDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVWSLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYL 203
           LD H KGVNCVDYFTGGD+PYL
Sbjct: 181 LDGHSKGVNCVDYFTGGDRPYL 202

[Close]

BLAST of Carg18813 vs. Swiss-Prot
Match: sp|Q5VQ78|COB21_ORYSJ (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0143900 PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.8e-64
Identity = 187/205 (91.22%), Postives = 195/205 (95.12%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRK AQRSERVKSVDLHPTEPWIL+SLYSG+VCIW+YQSQ MVKSFEV+ELP 
Sbjct: 1   MPLRLEIKRKFAQRSERVKSVDLHPTEPWILSSLYSGSVCIWDYQSQTMVKSFEVSELPX 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXX+KGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT KIW+LGSPDPNFT
Sbjct: 121 XXXXXXXXDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTTKIWSLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITG 206
           LD HQKGVNCVDYFTGGD+PYLITG
Sbjct: 181 LDGHQKGVNCVDYFTGGDRPYLITG 205

[Close]

BLAST of Carg18813 vs. TrEMBL
Match: tr|A0A1S3CGA5|A0A1S3CGA5_CUCME (Coatomer subunit beta' OS=Cucumis melo OX=3656 GN=LOC103500567 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 9.1e-76
Identity = 212/213 (99.53%), Postives = 212/213 (99.53%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RSAK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RSAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. TrEMBL
Match: tr|A0A1S3CG62|A0A1S3CG62_CUCME (Coatomer subunit beta' OS=Cucumis melo OX=3656 GN=LOC103500567 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 9.1e-76
Identity = 212/213 (99.53%), Postives = 212/213 (99.53%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RSAK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RSAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. TrEMBL
Match: tr|A0A1S3U520|A0A1S3U520_VIGRR (Coatomer subunit beta' OS=Vigna radiata var. radiata OX=3916 GN=LOC106761978 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 5.9e-75
Identity = 207/213 (97.18%), Postives = 207/213 (97.18%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVK VDLHPTEPWILASLYSGTVCIWNYQSQ M KSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPV 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RSAKF   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RSAKFIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. TrEMBL
Match: tr|K7M3V5|K7M3V5_SOYBN (Coatomer subunit beta' OS=Glycine max OX=3847 GN=100815780 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 7.7e-75
Identity = 206/213 (96.71%), Postives = 207/213 (97.18%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVK VDLHPTEPWILASLYSGTVCIWNYQSQ M KSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPV 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RSAKF   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RSAKFIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXXEKGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 XXXXXXXXEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. TrEMBL
Match: tr|I1M5M4|I1M5M4_SOYBN (Coatomer subunit beta' OS=Glycine max OX=3847 GN=100815780 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 7.7e-75
Identity = 206/213 (96.71%), Postives = 207/213 (97.18%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVK VDLHPTEPWILASLYSGTVCIWNYQSQ M KSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPV 60

Query: 61  RSAKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RSAKF   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RSAKFIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           XXXXXXXXEKGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 XXXXXXXXEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

The following BLAST results are available for this feature:

BLAST of Carg18813 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964510.1	2.1e-76	100.00	coatomer subunit beta'-2 isoform X1 [Cucurbita moschata] >XP_023514348.1 coatome...	[more]
XP_022964511.1	2.1e-76	100.00	coatomer subunit beta'-2 isoform X2 [Cucurbita moschata] >XP_023514350.1 coatome...	[more]
XP_023000306.1	2.1e-76	100.00	coatomer subunit beta'-2 isoform X2 [Cucurbita maxima]	[more]
XP_023000305.1	2.1e-76	100.00	coatomer subunit beta'-2 isoform X1 [Cucurbita maxima]	[more]
XP_022992094.1	1.0e-75	98.59	coatomer subunit beta'-2-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg18813 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G52360.2	3.7e-75	95.75	Coatomer, beta' subunit	[more]
AT1G79990.1	2.3e-72	93.87	structural molecules	[more]
AT3G15980.5	8.0e-62	89.27	Coatomer, beta' subunit	[more]
AT5G43920.1	2.1e-06	35.90	transducin family protein / WD-40 repeat family protein	[more]
AT5G42010.1	8.2e-06	30.26	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Carg18813 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C827\|COB22_ARATH	1.8e-74	95.77	Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1	[more]
sp\|Q9CAA0\|COB21_ARATH	1.1e-71	93.90	Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2	[more]
sp\|Q6H8D5\|COB22_ORYSJ	7.9e-67	92.57	Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g020910...	[more]
sp\|Q6H8D6\|COB23_ORYSJ	2.3e-66	91.09	Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
sp\|Q5VQ78\|COB21_ORYSJ	2.8e-64	91.22	Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g014390...	[more]

BLAST of Carg18813 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CGA5\|A0A1S3CGA5_CUCME	9.1e-76	99.53	Coatomer subunit beta' OS=Cucumis melo OX=3656 GN=LOC103500567 PE=3 SV=1	[more]
tr\|A0A1S3CG62\|A0A1S3CG62_CUCME	9.1e-76	99.53	Coatomer subunit beta' OS=Cucumis melo OX=3656 GN=LOC103500567 PE=3 SV=1	[more]
tr\|A0A1S3U520\|A0A1S3U520_VIGRR	5.9e-75	97.18	Coatomer subunit beta' OS=Vigna radiata var. radiata OX=3916 GN=LOC106761978 PE=...	[more]
tr\|K7M3V5\|K7M3V5_SOYBN	7.7e-75	96.71	Coatomer subunit beta' OS=Glycine max OX=3847 GN=100815780 PE=3 SV=1	[more]
tr\|I1M5M4\|I1M5M4_SOYBN	7.7e-75	96.71	Coatomer subunit beta' OS=Glycine max OX=3847 GN=100815780 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036322	WD40_repeat_dom_sf
IPR017986	WD40_repeat_dom
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR001680	WD40_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030117	membrane coat
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005198	structural molecule activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18813-RA	Carg18813-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 174..215 e-value: 0.031 score: 23.4 coord: 46..85 e-value: 4.2 score: 13.1 coord: 4..43 e-value: 0.49 score: 18.9 coord: 88..127 e-value: 8.5E-9 score: 45.2 coord: 131..171 e-value: 2.6E-9 score: 46.9
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 177..213 e-value: 3.1E-4 score: 21.4 coord: 91..127 e-value: 1.1E-6 score: 29.2 coord: 18..43 e-value: 0.079 score: 13.8 coord: 133..171 e-value: 1.9E-5 score: 25.2
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 95..127 score: 12.747
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 138..180 score: 13.65
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	G3DSA:2.130.10.10		coord: 11..215 e-value: 7.6E-82 score: 276.5
None	No IPR available	PANTHER	PTHR19876	COATOMER	coord: 1..213
None	No IPR available	PANTHER	PTHR19876:SF6	SUBFAMILY NOT NAMED	coord: 1..213
None	No IPR available	CDD	cd00200	WD40	coord: 6..213 e-value: 1.38319E-45 score: 154.03
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 11..213 score: 32.035
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	SSF50978	WD40 repeat-like	coord: 3..213

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18813	Carg06489	Silver-seed gourd	carcarB143
Carg18813	Carg04253	Silver-seed gourd	carcarB234

The following block(s) are covering this gene:

None