Carg18792 (gene) Silver-seed gourd

Overview
NameCarg18792
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_123 : 279178 .. 281912 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGTCCAATTGCGGCATCCGCAACATCGTCGGTCAACACATCGGGTGTATTAGTAACCCTAATTCCCTTCTCCCGGCACTTCGGCAAATCAATTTTGTCTAGTCCCACACTGAAGCTCGCTACGATTTCCAACGCCGGAAAAGTGTCGATTAAATTGGCGTCGGCGCCGATCTTGGTACAGCCGACTACTGCTCTGATCGATTTCGCGTTTTGTTGAAGGTAATCGGAGTTGAGAGGATGAATCCAGAGCTTGAAGAGATTGAAGCGTTGTTCAAGCTGTTTTTCGAGGTAACTGAACATTGGAGTGGTCATTGCAACTCCTATCTTCTCCATTTTCAGCGCAGCAAAATGTTCCAGCGCACTGCAACAATTCCCAAACATATGGGAGCAATTTTGAAATTTCCTTTTGTACTTTTTGAAGAGTAATTTTTTTTTTTAATTAATTCTTTTTTTAATAAACTGTTCTAGCTATTTAATTCCCTCTTATTTATTTGTTTTAGTCAAACAAACATGGATCATCCAAATGCGGTACAAAGTGACGTTTATTGATCACTTCTCGAGATAGATTATAGCAATATAAAAACATTATTGTTTATAGTGAAACTTCATAACTCCACATAACTCATAGCTCCAAACACACACTCCTTAAACTCAGACTCAAGTCACGGGAGTAAGTAGAGGCTCATTCCTGAAATGTGCCTCCAAGTTTCGAATCACAAGGTCGGCCATTGCAGTGCTGGTCTCGTTGGTATCGGATGCGACGTGAGGCAATAGAACTACATTTTGAAGCTGAAGCAACTGTTTAGGTACATGGGGCTCGTTTTCATATACATCTAGTCCTGCCCCAGCCAAACGACCATCGAGCAGCGCAGAGACGAGCTCAGATTCATCGACGTGAGCACCTCGTCCAATGTTGATAAGAAAGCCATGTGGCCCCAATGCATCGATTACTTGTCGATTGATAATGTGCTTAGTTTGTTGGGTGAGATTGCATGCCACGAACAGAAATTGGGAGTTTGCAGCCAAGTCTAGGACGGTGGGAAAGTATTTGTAAACACTGTGATGCTTATCATTCCTACTGCAATAACTGATGGAGCACCCAAATGCTTCAGCTCTCTTGGCAATGGCTGAACCGATCCTTCCCAACCCAACAATTCCTACTGATTTTCGACTGAACTGAAATACACAACCACTACTGAATCAAGTAAAATTATTTAGATTTACATCCACATTCTTGTTTTTTTAATAAAAAATAAGAGGTTAGTTTTAAAATATTTATTTTTTTTTTAAACATTTAATTAAGATTTATTATTATATTTTTTAAATAATTAAAATTCTATTTTTTAAGATGGTGGAAGAATAAAGAACTGTACGCAAGAAAAAAATGTATTTTTAAAAAGAAATTAACTATTTGACTTGATAAAAATAAATAATTGAGTACTGTTTCGAAAGTTAAATTAATAAAAATATCCCTAAACTTTATATCAAAAATACTAGTAAACTTTTAAAAATTTCAATGATATTTTTAAACATTAAAAAATCTCAAAAATATATTTGGAATAGAAATAGTTAATAATTTATTTAAAAAATATCCTTAAATTTTTAATAAAATTTAAAAAATACTCTTAAAAAGTTCAAAAATATCATTATCGTTAGTACTACGTTTAAAAAATATCATTATTGTTACCGTTGGTATATATTTAAAAAAATTAGAAAATACTATTATCGTTAGTACTATATTTAAAGAATATACGAAATTTCTAAAGTAAAAAATATCATTGATACTCTTTTACTTTATATATATATATATAAAATAAAAAATACACATCCCATAAATTATTTTCAAATTTTTTAATATTACTTTTGAAATTTCTTTAATATTTTTTAAACCTAATACTTGCCGCAAATATATATTTAAAGTTTTTTTAAACGTATTAATAAATTTTTTAAACTTAAAAATATTTAAAAAATACTTTTCATGACTAAAGGGTATTTTTTAAATCCTAAAAAACGTTCAAGAGTATTATAAAAAGGAAGTATTTATTTTTGAACTTTTTATACCGTTTAAGGATATTTTTGTAATTTAACCTATTCCTACCCATCAAATAATCAGCGCAATCTCTCCTCTGTATTTATGCACAAACAAATGCAAAGCATACCTTCGTTCCCAAACCAAAATCGCCTTTGGTCCACGATCCACTCCGGACGAACCGATCGCACTCACAAATCCTCCTCGAAACCGCAATGGCCAGACCAATTGCGGCATCGGCGACATCGTCGGTCAACACATCGGGTGTATTGGTAACCCTAATCCCCTTCTCCACGCATTTCGCCAAATCAATTTTGTCGATTCCTACACTGAAGCTCGCTACGACTTCCAAAGCCGGCAAAGCGTCGATCAAATTAGCATCGGCACCGGAACTGGAACTGACGACTACTGCTCTGATCGATTGCGCGTTTTGCTGAAGGTAATCGGAGTTGAGAGGATGAATCCAGAGCTTGAAGAGATTGAAACGTTTTTCAAGCTGTTTTTCGAGGTAACTCACCATTGGATCGGTCATTGCAACTCCTATCTTCTCCATTTTTAGGGCACCAAAAAAGCTTCGGCGGATTGCAGCAATTTTCTCAAATATGAGAGCTCTTTAGGGATTTTGCTTTGTGATCTGTTTAAGAGTAAAGTTCGTTCGTTTTATATTATTATTCTTTTAGATTCTTTTTTCTATTTATTAA

mRNA sequence

ATGGCCAGTCCAATTGCGGCATCCGCAACATCGTCGGTCAACACATCGGGTGTATTAGTAACCCTAATTCCCTTCTCCCGGCACTTCGGCAAATCAATTTTGTCTAGTCCCACACTGAAGCTCGCTACGATTTCCAACGCCGGAAAAGTGTCGATTAAATTGGCGTCGGCGCCGATCTTGGTAATCGGAGTTGAGAGGATGAATCCAGAGCTTGAAGAGATTGAAGCGTTGTTCAAGCTGTTTTTCGAGATTCTTTTTTCTATTTATTAA

Coding sequence (CDS)

ATGGCCAGTCCAATTGCGGCATCCGCAACATCGTCGGTCAACACATCGGGTGTATTAGTAACCCTAATTCCCTTCTCCCGGCACTTCGGCAAATCAATTTTGTCTAGTCCCACACTGAAGCTCGCTACGATTTCCAACGCCGGAAAAGTGTCGATTAAATTGGCGTCGGCGCCGATCTTGGTAATCGGAGTTGAGAGGATGAATCCAGAGCTTGAAGAGATTGAAGCGTTGTTCAAGCTGTTTTTCGAGATTCTTTTTTCTATTTATTAA

Protein sequence

MASPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVIGVERMNPELEEIEALFKLFFEILFSIY
Homology
[Close]
BLAST of Carg18792 vs. NCBI nr
Match: PLY83525.1 (hypothetical protein LSAT_8X122100 [Lactuca sativa])

HSP 1 Score: 68.9 bits (167), Expect = 9.6e-09
Identity = 45/77 (58.44%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 3   SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI 62
           +PIA SATSSVNTSGVLVTLIPF     KS LS+PTLKL TIS AG  SI   SAP L  
Sbjct: 200 NPIAKSATSSVNTSGVLVTLIPFCLQCPKSTLSNPTLKLDTISKAGNESINSRSAPALAF 259

Query: 63  -GVERMNPELEEIEALF 79
               R+ PE    ++ F
Sbjct: 260 PTTARIEPEFSLKKSFF 276

[Close]
BLAST of Carg18792 vs. NCBI nr
Match: PLY78083.1 (hypothetical protein LSAT_1X4641 [Lactuca sativa])

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 44/78 (56.41%), Postives = 46/78 (58.97%), Query Frame = 0 

Query: 3   SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI 62
           +PIA SATSSVNTSGVLVTLIPF     KS  S+PTLKL TI  AG  SI   SAP L  
Sbjct: 102 NPIAKSATSSVNTSGVLVTLIPFCLQCPKSTFSNPTLKLDTIPKAGNESINSRSAPALAF 161

Query: 63  GVERMNPELEEIEALFKL 81
                 P    IE  F L
Sbjct: 162 ------PTTSRIEPKFSL 173

[Close]
BLAST of Carg18792 vs. TrEMBL
Match: tr|A0A2J6L866|A0A2J6L866_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_8X122100 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.4e-09
Identity = 45/77 (58.44%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 3   SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI 62
           +PIA SATSSVNTSGVLVTLIPF     KS LS+PTLKL TIS AG  SI   SAP L  
Sbjct: 200 NPIAKSATSSVNTSGVLVTLIPFCLQCPKSTLSNPTLKLDTISKAGNESINSRSAPALAF 259

Query: 63  -GVERMNPELEEIEALF 79
               R+ PE    ++ F
Sbjct: 260 PTTARIEPEFSLKKSFF 276

[Close]
BLAST of Carg18792 vs. TrEMBL
Match: tr|A0A2P2NPS4|A0A2P2NPS4_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 6   AASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI 63
           + SATSSV T GVLVTLIPFS HF KSILS+PTL++AT S  G+ SI    APILV+
Sbjct: 59  SVSATSSVKTWGVLVTLIPFSSHFPKSILSNPTLQVATFSKLGRASISSTLAPILVL 115

[Close]
BLAST of Carg18792 vs. TrEMBL
Match: tr|A0A2J6KSN2|A0A2J6KSN2_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_1X4641 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 44/78 (56.41%), Postives = 46/78 (58.97%), Query Frame = 0 

Query: 3   SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI 62
           +PIA SATSSVNTSGVLVTLIPF     KS  S+PTLKL TI  AG  SI   SAP L  
Sbjct: 102 NPIAKSATSSVNTSGVLVTLIPFCLQCPKSTFSNPTLKLDTIPKAGNESINSRSAPALAF 161

Query: 63  GVERMNPELEEIEALFKL 81
                 P    IE  F L
Sbjct: 162 ------PTTSRIEPKFSL 173

The following BLAST results are available for this feature:
BLAST of Carg18792 vs. NCBI nr
Match NameE-valueIdentityDescription
PLY83525.19.6e-0958.44hypothetical protein LSAT_8X122100 [Lactuca sativa][more]
PLY78083.12.4e-0756.41hypothetical protein LSAT_1X4641 [Lactuca sativa][more]
BLAST of Carg18792 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg18792 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg18792 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2J6L866|A0A2J6L866_LACSA6.4e-0958.44Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_8X122100 PE=4 SV=1[more]
tr|A0A2P2NPS4|A0A2P2NPS4_RHIMU1.9e-0866.67Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A2J6KSN2|A0A2J6KSN2_LACSA1.6e-0756.41Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_1X4641 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18792-RACarg18792-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18792CmaCh08G007030Cucurbita maxima (Rimu)carcmaB1046
Carg18792CmoCh08G006690Cucurbita moschata (Rifu)carcmoB1018
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg18792Silver-seed gourdcarcarB045
Carg18792Silver-seed gourdcarcarB143
Carg18792Silver-seed gourdcarcarB155
Carg18792Silver-seed gourdcarcarB234
Carg18792Silver-seed gourdcarcarB596
Carg18792Cucumber (Gy14) v2carcgybB0739
Carg18792Cucumber (Gy14) v2carcgybB0742
Carg18792Cucumber (Gy14) v1carcgyB0836
Carg18792Cucumber (Gy14) v1carcgyB0839
Carg18792Cucurbita maxima (Rimu)carcmaB1042
Carg18792Cucurbita maxima (Rimu)carcmaB1043
Carg18792Cucurbita maxima (Rimu)carcmaB1044
Carg18792Cucurbita maxima (Rimu)carcmaB1045
Carg18792Cucurbita moschata (Rifu)carcmoB1014
Carg18792Cucurbita moschata (Rifu)carcmoB1015
Carg18792Cucurbita moschata (Rifu)carcmoB1017
Carg18792Cucurbita pepo (Zucchini)carcpeB1049
Carg18792Cucurbita pepo (Zucchini)carcpeB1051
Carg18792Cucurbita pepo (Zucchini)carcpeB1052
Carg18792Cucurbita pepo (Zucchini)carcpeB1053
Carg18792Cucurbita pepo (Zucchini)carcpeB1054
Carg18792Cucurbita pepo (Zucchini)carcpeB1055
Carg18792Wild cucumber (PI 183967)carcpiB0777
Carg18792Wild cucumber (PI 183967)carcpiB0780
Carg18792Cucumber (Chinese Long) v2carcuB0760
Carg18792Cucumber (Chinese Long) v2carcuB0763
Carg18792Cucumber (Chinese Long) v3carcucB0780
Carg18792Cucumber (Chinese Long) v3carcucB0783
Carg18792Bottle gourd (USVL1VR-Ls)carlsiB684
Carg18792Bottle gourd (USVL1VR-Ls)carlsiB685
Carg18792Melon (DHL92) v3.5.1carmeB0742
Carg18792Melon (DHL92) v3.5.1carmeB0741
Carg18792Melon (DHL92) v3.6.1carmedB0754
Carg18792Melon (DHL92) v3.6.1carmedB0755
Carg18792Watermelon (Charleston Gray)carwcgB0722
Carg18792Watermelon (Charleston Gray)carwcgB0725
Carg18792Watermelon (97103) v1carwmB0743
Carg18792Watermelon (97103) v1carwmB0746
Carg18792Watermelon (97103) v1carwmB0747
Carg18792Watermelon (97103) v2carwmbB0781
Carg18792Watermelon (97103) v2carwmbB0780
Carg18792Watermelon (97103) v2carwmbB0782
Carg18792Wax gourdcarwgoB0879
Carg18792Wax gourdcarwgoB0883