Carg18692 (gene) Silver-seed gourd

NameCarg18692
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionchaperone protein dnaJ GFA2, mitochondrial
LocationCucurbita_argyrosperma_scaffold_139 : 174323 .. 175176 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCCTTCTTCAGCTCTGCTAGAACCTTCCGTCTTTGCTTGCCCTAGGGTTTTTACAGGGTTTTTTCATATCGTCAATTGGGCAACCTCCGATTCCCACTTTCAGGTCACTCTCCGACCTTTCACCCAGAGCTACAGATAGCTACGCATCCAAATGGTTCGCTCCGATGGCCTCAGGTTCATTCGTTTGTTGGCTCGTCGTTCTTTAACACACCACCACCTCTCTCGCGAATCCTCGAGCTCCGTATGTCCATTTTATGTGATTCTTTTTGTCTCGTAATCATGTTATTGGTCTCATGGATTCTATCGATTTATTTGAGGATTGGTTATTTGTAGGTAAACGACGCAGTTTCTCGAGGGAGTTGTCGACGATTTCATTCTGGTGTTTGCTACACATCTGTTGGTTTTGGAAATTGTGCCTCGAGGAATGGTATGTATTTGTATCTTCTTTTACACATGGTCTTTGTTCTTTTCTGTTGGGTCAAGTTAAAGGAAAAAGAGATTGCAACATATGGGTCTTACTTGAAAACTTGTAATCTCTAATTGTGAGATAGTTGTATGTATGTTCTCTCTGGAATTGGATTAAAATCATGCTTGAATTTTGGTCGATCAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATCTTCTTTTTTGTGTGTGTCTTGCGGTGCAGTTAATAAAAAGAACTGGTTTCAGTTGGGAGTTCTTGGTGCCAACCCTGGAGAAGCAAAATTAATTCATGGCACTGGTATGAAATTGTACACCATCCAGAATACATTTATTTACTTCCTATCCCGTTCCCTTGAATTGCTTTCCCCTGTTGCATCCATAGCTGAGGGGTGTTTGTAG

mRNA sequence

ATGTCCCCTTCTTCAGCTCTGCTAGAACCTTCCGTCTTTGCTTGCCCTAGGGTTTTTACAGGGTTTTTTCATATCGTCAATTGGGCAACCTCCGATTCCCACTTTCAGGTAAACGACGCAGTTTCTCGAGGGAGTTGTCGACGATTTCATTCTGGTGTTTGCTACACATCTGTTGGTTTTGGAAATTGTGCCTCGAGGAATGTTAATAAAAAGAACTGGTTTCAGTTGGGAGTTCTTGGTGCCAACCCTGGAGAAGCAAAATTAATTCATGGCACTGGTATGAAATTGTACACCATCCAGAATACATTTATTTACTTCCTATCCCGTTCCCTTGAATTGCTTTCCCCTGTTGCATCCATAGCTGAGGGGTGTTTGTAG

Coding sequence (CDS)

ATGTCCCCTTCTTCAGCTCTGCTAGAACCTTCCGTCTTTGCTTGCCCTAGGGTTTTTACAGGGTTTTTTCATATCGTCAATTGGGCAACCTCCGATTCCCACTTTCAGGTAAACGACGCAGTTTCTCGAGGGAGTTGTCGACGATTTCATTCTGGTGTTTGCTACACATCTGTTGGTTTTGGAAATTGTGCCTCGAGGAATGTTAATAAAAAGAACTGGTTTCAGTTGGGAGTTCTTGGTGCCAACCCTGGAGAAGCAAAATTAATTCATGGCACTGGTATGAAATTGTACACCATCCAGAATACATTTATTTACTTCCTATCCCGTTCCCTTGAATTGCTTTCCCCTGTTGCATCCATAGCTGAGGGGTGTTTGTAG

Protein sequence

MSPSSALLEPSVFACPRVFTGFFHIVNWATSDSHFQVNDAVSRGSCRRFHSGVCYTSVGFGNCASRNVNKKNWFQLGVLGANPGEAKLIHGTGMKLYTIQNTFIYFLSRSLELLSPVASIAEGCL
BLAST of Carg18692 vs. NCBI nr
Match: XP_022954316.1 (chaperone protein dnaJ GFA2, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 32 DSHFQVNDAVSRGSCRRFHSGVCYTSVGFGNCASRNVNKKNWFQLGVLGANPGEAKLIHG 91
          +S   VNDAVSRGSCRRFHSGVCYTSVGFGNCASRNVNKKNWFQLGVLGANPGEAKLIHG
Sbjct: 26 ESSSSVNDAVSRGSCRRFHSGVCYTSVGFGNCASRNVNKKNWFQLGVLGANPGEAKLIHG 85

Query: 92 T 93
          T
Sbjct: 86 T 86

BLAST of Carg18692 vs. NCBI nr
Match: XP_022991892.1 (chaperone protein dnaJ GFA2, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24
Identity = 59/69 (85.51%), Postives = 61/69 (88.41%), Query Frame = 0

Query: 24 HIVNWATSDSHFQVNDAVSRGSCRRFHSGVCYTSVGFGNCASRNVNKKNWFQLGVLGANP 83
          H ++  TS S   VNDAVSRGSCRRFHS VCYTSVGFGNCASRNVNKKNWFQLGVLGANP
Sbjct: 21 HHLSRETSSS---VNDAVSRGSCRRFHSDVCYTSVGFGNCASRNVNKKNWFQLGVLGANP 80

Query: 84 GEAKLIHGT 93
          GEAKLIHGT
Sbjct: 81 GEAKLIHGT 86

BLAST of Carg18692 vs. NCBI nr
Match: XP_023549264.1 (chaperone protein dnaJ GFA2, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.5 bits (293), Expect = 3.3e-23
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 32 DSHFQVNDAVSRGSCRRFHSGVCYTSVGFGNCASRNVNKKNWFQLGVLGANPGEAKLIHG 91
          +S   VNDAVSRGSCRRFHS VCYTSVGFGN ASRNVNKKNWFQLGVLGANPGEAKLIHG
Sbjct: 26 ESSSSVNDAVSRGSCRRFHSDVCYTSVGFGNRASRNVNKKNWFQLGVLGANPGEAKLIHG 85

Query: 92 T 93
          T
Sbjct: 86 T 86

BLAST of Carg18692 vs. NCBI nr
Match: XP_022147730.1 (chaperone protein dnaJ GFA2, mitochondrial [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 2.9e-19
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 27 NWATSDSHFQVNDAVSRGSCRRFHSGVCYTSVGFGNCASRNVNKKNWFQLGVLGANPGEA 86
          ++  S+S   V DA+ RGSCRRF+SGVCYTS   GNC S+NVNKKNWFQLGVLGAN GEA
Sbjct: 20 SYLLSESGSSVQDAIFRGSCRRFNSGVCYTSFILGNCGSKNVNKKNWFQLGVLGANCGEA 79

Query: 87 KLIHGT 93
          KLIHGT
Sbjct: 80 KLIHGT 85

BLAST of Carg18692 vs. NCBI nr
Match: XP_004135911.1 (PREDICTED: chaperone protein dnaJ 1, mitochondrial [Cucumis sativus] >KGN45156.1 hypothetical protein Csa_7G428930 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 3.6e-17
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 32 DSHFQVNDAVSRGSCRRFHSGVCYTSVGFGNCASRNVNKKNWFQLGVLGANPGEAKLIHG 91
          +S   V DAV RGSCR+FHSGVC     FGNCAS+NVNKKNWF+LGVLGAN GEAK IHG
Sbjct: 25 ESSTSVTDAVFRGSCRQFHSGVCNKFACFGNCASKNVNKKNWFRLGVLGANYGEAKFIHG 84

Query: 92 T 93
          T
Sbjct: 85 T 85

BLAST of Carg18692 vs. TrEMBL
Match: tr|A0A0A0KBI4|A0A0A0KBI4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428930 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-17
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 32 DSHFQVNDAVSRGSCRRFHSGVCYTSVGFGNCASRNVNKKNWFQLGVLGANPGEAKLIHG 91
          +S   V DAV RGSCR+FHSGVC     FGNCAS+NVNKKNWF+LGVLGAN GEAK IHG
Sbjct: 25 ESSTSVTDAVFRGSCRQFHSGVCNKFACFGNCASKNVNKKNWFRLGVLGANYGEAKFIHG 84

Query: 92 T 93
          T
Sbjct: 85 T 85

BLAST of Carg18692 vs. TrEMBL
Match: tr|A0A1S3CEB4|A0A1S3CEB4_CUCME (chaperone protein dnaJ GFA2, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103499901 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.0e-17
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 32 DSHFQVNDAVSRGSCRRFHSGVCYTSVGFGNCASRNVNKKNWFQLGVLGANPGEAKLIHG 91
          +S   VNDAV RGS R+FH GVC  S  FGNCAS+NVNKKNWFQLGVLGAN GEAK IHG
Sbjct: 25 ESSTSVNDAVFRGSHRQFHYGVCNKSACFGNCASKNVNKKNWFQLGVLGANYGEAKFIHG 84

Query: 92 T 93
          T
Sbjct: 85 T 85

BLAST of Carg18692 vs. TrEMBL
Match: tr|A0A2P4HVJ0|A0A2P4HVJ0_QUESU (Chaperone protein dnaj gfa2, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_17361 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-08
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 20 TGFFHIVNWATSDSHFQVNDAVSRGSCRRFHSGVCYTSVGFGNCASRNVNKKNWFQLGVL 79
          + FFH    AT      + + V +G+ R F+SGVC  S   GN  S+NV++KNW  LG L
Sbjct: 20 SNFFHQSRAAT------IYETVGKGAYRNFNSGVCNPSRILGNYTSKNVSQKNWLLLGAL 79

Query: 80 GANPGEAKLIHGT 93
           AN G A+LIHGT
Sbjct: 80 NANCGSARLIHGT 86

BLAST of Carg18692 vs. TrEMBL
Match: tr|A0A2N9H8B7|A0A2N9H8B7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38528 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.9e-07
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 20 TGFFHIVNWATSDSHFQVNDAVSRGSCRRFHSGVCYTSVGFGNCASRNVNKKNWFQLGVL 79
          + FFH        S + + + V +G+ R F++GVC  S   GN +S+NV++KNW  LG L
Sbjct: 20 SNFFH-------QSKYSIYETVCKGAYRNFNTGVCNPSRILGNYSSKNVSQKNWLLLGAL 79

Query: 80 GANPGEAKLIHGTGM 95
           AN G A+ IH TG+
Sbjct: 80 NANWGTARSIHSTGL 87

BLAST of Carg18692 vs. TrEMBL
Match: tr|A0A2N9FNV4|A0A2N9FNV4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20299 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.9e-07
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 20 TGFFHIVNWATSDSHFQVNDAVSRGSCRRFHSGVCYTSVGFGNCASRNVNKKNWFQLGVL 79
          + FFH        S + + + V +G+ R F++GVC  S   GN +S+NV++KNW  LG L
Sbjct: 20 SNFFH-------QSKYSIYETVCKGAYRNFNTGVCNPSRILGNYSSKNVSQKNWLLLGAL 79

Query: 80 GANPGEAKLIHGTGM 95
           AN G A+ IH TG+
Sbjct: 80 NANWGTARSIHSTGL 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022954316.12.1e-2593.44chaperone protein dnaJ GFA2, mitochondrial-like [Cucurbita moschata][more]
XP_022991892.11.3e-2485.51chaperone protein dnaJ GFA2, mitochondrial-like [Cucurbita maxima][more]
XP_023549264.13.3e-2390.16chaperone protein dnaJ GFA2, mitochondrial-like [Cucurbita pepo subsp. pepo][more]
XP_022147730.12.9e-1972.73chaperone protein dnaJ GFA2, mitochondrial [Momordica charantia][more]
XP_004135911.13.6e-1773.77PREDICTED: chaperone protein dnaJ 1, mitochondrial [Cucumis sativus] >KGN45156.1... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KBI4|A0A0A0KBI4_CUCSA2.4e-1773.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428930 PE=3 SV=1[more]
tr|A0A1S3CEB4|A0A1S3CEB4_CUCME4.0e-1775.41chaperone protein dnaJ GFA2, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1034999... [more]
tr|A0A2P4HVJ0|A0A2P4HVJ0_QUESU9.9e-0846.58Chaperone protein dnaj gfa2, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_17... [more]
tr|A0A2N9H8B7|A0A2N9H8B7_FAGSY4.9e-0741.33Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38528 PE=3 SV=1[more]
tr|A0A2N9FNV4|A0A2N9FNV4_FAGSY4.9e-0741.33Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20299 PE=3 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18692-RACarg18692-RAmRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg18692Wax gourdcarwgoB0437
Carg18692Wax gourdcarwgoB0438
Carg18692Wax gourdcarwgoB0439
Carg18692Silver-seed gourdcarcarB207
Carg18692Silver-seed gourdcarcarB288
Carg18692Silver-seed gourdcarcarB379
Carg18692Silver-seed gourdcarcarB380
Carg18692Silver-seed gourdcarcarB381
Carg18692Silver-seed gourdcarcarB382
Carg18692Silver-seed gourdcarcarB383
Carg18692Cucumber (Gy14) v2carcgybB0365
Carg18692Cucumber (Gy14) v2carcgybB0366
Carg18692Cucumber (Gy14) v1carcgyB0413
Carg18692Cucurbita maxima (Rimu)carcmaB0496
Carg18692Cucurbita maxima (Rimu)carcmaB0497
Carg18692Cucurbita maxima (Rimu)carcmaB0498
Carg18692Cucurbita maxima (Rimu)carcmaB0499
Carg18692Cucurbita moschata (Rifu)carcmoB0479
Carg18692Cucurbita moschata (Rifu)carcmoB0480
Carg18692Cucurbita moschata (Rifu)carcmoB0481
Carg18692Cucurbita moschata (Rifu)carcmoB0482
Carg18692Cucurbita pepo (Zucchini)carcpeB0493
Carg18692Cucurbita pepo (Zucchini)carcpeB0494
Carg18692Cucurbita pepo (Zucchini)carcpeB0495
Carg18692Wild cucumber (PI 183967)carcpiB0390
Carg18692Wild cucumber (PI 183967)carcpiB0391
Carg18692Cucumber (Chinese Long) v2carcuB0386
Carg18692Cucumber (Chinese Long) v2carcuB0387
Carg18692Cucumber (Chinese Long) v3carcucB0389
Carg18692Cucumber (Chinese Long) v3carcucB0390
Carg18692Bottle gourd (USVL1VR-Ls)carlsiB322
Carg18692Bottle gourd (USVL1VR-Ls)carlsiB321
Carg18692Melon (DHL92) v3.5.1carmeB0359
Carg18692Melon (DHL92) v3.5.1carmeB0360
Carg18692Melon (DHL92) v3.6.1carmedB0364
Carg18692Melon (DHL92) v3.6.1carmedB0365
Carg18692Watermelon (Charleston Gray)carwcgB0347
Carg18692Watermelon (Charleston Gray)carwcgB0346
Carg18692Watermelon (97103) v1carwmB0345
Carg18692Watermelon (97103) v1carwmB0346
Carg18692Watermelon (97103) v2carwmbB0369
Carg18692Watermelon (97103) v2carwmbB0371