Carg18681 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18681
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase makorin
Location	Cucurbita_argyrosperma_scaffold_139 : 134865 .. 136091 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGTAATTTACGTATATTATCCATGAAGTAGTTTGTGGACTTTCTCACATGATGATGCTTGTTTCTCGAATTTTTTAGCATTTCTACTTCCCTTGTTACATGCATCTGCATTGTACTCAGCTATATTAACTTCAAAATGAGATTCAAAATTTGATGTGATTCTCATTGCAGCACGCTCATTGGGATGGCCGGTTGGAAGAGATCACTCTGCGTCATATTGGGAATCAAGATGGTCTCACTGTTATCGCCAAAAATATTAGGTTTTGTTTTGTGGATTTGCTTCTTGTTGTCTATTTTTGTTCAACGTTACCTTTTATAAATTTGAAGCTATTTTCAGGTTGTCGGAATTTCTCAGTGACTTGCATATCAGGTGAAGAATCATTCCATCAGGTATGAGAACACACTAAAGACTCCTCACCCCTATAGTTCACCATCATGCCAATATGATGTCCACTACGTAATATGTCAGATTTTAATATGATCATTATTAATTTTATATTGCTAGTCGTTTCCTACTATCATAAGGTTTTGTTTGGACTCCGTAATTCAGTACGTAATATGTCAGATTTTAATATGATCATTATTAATTTTATATTGCTAGTCGTTTCCTACTATCATAAGGTTTTGTTTGGACTTCGTAAGTCAGTATCTTTATCAATTGAAACCCAGCATATTTTATTCGAAACGGAGTCGATTAATGTTGGCACAATCTGTTATCACTATATTTCAATGCCAAATTTTATGTATTGTATTAGTCTTCAATTACACTTGCAATATCATCTATGAGTTTGAAAATCAGTTTCAGATGCGCTATTGCCTGAAATTAACAATGTAGCCCATGAAATGCCAACCTTTGTTTATTATTAGTCTTCATTTACACTTGCAATGTAATTGAAGAGTTTGAAAACCAGTTTCAGATGTTGAATTGCTTGCTGGAGTCTGATATTGAGAAACGAAAGGTGGGTTACCGAGCACGGTTCTTCGAACTTCATCTTCTATGTATCAAAATGAAGCTGGAAGACATTATGTCATACTGAGGAATGAAGGCAGGTGAATAAATTGTAAGGGTTCTACGCTGTTGTTGTTGTTGTACTAAACATTGGAAAATGACCGAATGTATTTGTTTGTATTTTAAGAAGAAGATAAATGGGGATGTCGATGTCGATGTCGATGTCGTGTGTGGTTTGATAGAGAAACAAGAGAAAAGGAAACTTCAAGGCTAG

mRNA sequence

ATGCCTCACGCTCATTGGGATGGCCGGTTGGAAGAGATCACTCTGCGTCATATTGGGAATCAAGATGGTCTCACTGTTATCGCCAAAAATATTAGGTTTTGTTTTGTGGATTTGCTTCTTGTTGTCTATTTTTGTTCAACGTTACCTTTTATAAATTTGAAGCTATTTTCAGGTTGTCGGAATTTCTCAGTGACTTGCATATCAGGTGAAGAATCATTCCATCAGAAGAAGATAAATGGGGATGTCGATGTCGATGTCGATGTCGTGTGTGGTTTGATAGAGAAACAAGAGAAAAGGAAACTTCAAGGCTAG

Coding sequence (CDS)

ATGCCTCACGCTCATTGGGATGGCCGGTTGGAAGAGATCACTCTGCGTCATATTGGGAATCAAGATGGTCTCACTGTTATCGCCAAAAATATTAGGTTTTGTTTTGTGGATTTGCTTCTTGTTGTCTATTTTTGTTCAACGTTACCTTTTATAAATTTGAAGCTATTTTCAGGTTGTCGGAATTTCTCAGTGACTTGCATATCAGGTGAAGAATCATTCCATCAGAAGAAGATAAATGGGGATGTCGATGTCGATGTCGATGTCGTGTGTGGTTTGATAGAGAAACAAGAGAAAAGGAAACTTCAAGGCTAG

Protein sequence

MPHAHWDGRLEEITLRHIGNQDGLTVIAKNIRFCFVDLLLVVYFCSTLPFINLKLFSGCRNFSVTCISGEESFHQKKINGDVDVDVDVVCGLIEKQEKRKLQG

Homology

[Close]

BLAST of Carg18681 vs. NCBI nr
Match: XP_022954068.1 (E3 ubiquitin-protein ligase makorin-like isoform X2 [Cucurbita moschata] >XP_022954069.1 E3 ubiquitin-protein ligase makorin-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 3   HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 33
           HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
Sbjct: 319 HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 348

[Close]

BLAST of Carg18681 vs. NCBI nr
Match: XP_022991900.1 (E3 ubiquitin-protein ligase makorin-like isoform X2 [Cucurbita maxima] >XP_022991901.1 E3 ubiquitin-protein ligase makorin-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 3   HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 33
           HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
Sbjct: 319 HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 348

[Close]

BLAST of Carg18681 vs. NCBI nr
Match: XP_023547952.1 (E3 ubiquitin-protein ligase makorin-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023547953.1 E3 ubiquitin-protein ligase makorin-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 3   HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 33
           HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
Sbjct: 319 HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 348

[Close]

BLAST of Carg18681 vs. NCBI nr
Match: XP_011659786.1 (PREDICTED: E3 ubiquitin-protein ligase makorin [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 4.0e-06
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MPHAHWDGRLEEITLRHIGNQDGLTVIAKNIR 33
           M HAH DGRLEEI LRHIGN+DGLTVIAKN+R
Sbjct: 400 MLHAHRDGRLEEIALRHIGNEDGLTVIAKNLR 431

[Close]

BLAST of Carg18681 vs. NCBI nr
Match: XP_022959903.1 (E3 ubiquitin-protein ligase makorin-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 60.5 bits (145), Expect = 4.0e-06
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 3   HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 33
           HAH DGRLEE+ LRHIGNQDGLT+IAKNIR
Sbjct: 319 HAHRDGRLEEVALRHIGNQDGLTIIAKNIR 348

[Close]

BLAST of Carg18681 vs. TAIR10
Match: AT3G08505.2 (zinc finger (CCCH-type/C3HC4-type RING finger) family protein)

HSP 1 Score: 43.9 bits (102), Expect = 7.0e-05
Identity = 18/30 (60.00%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 3   HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 33
           HA+ DG LEE+ LRH+G+Q+G TVI  +IR
Sbjct: 283 HAYSDGHLEEVVLRHLGSQEGETVITDSIR 312

[Close]

BLAST of Carg18681 vs. Swiss-Prot
Match: sp|Q5ZA07|C3H41_ORYSJ (E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica OX=39947 GN=MKRN PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 3   HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 33
           HA+ DGRLEE+ LRH+   DG TVIAKNIR
Sbjct: 329 HAYRDGRLEEVILRHLDADDGSTVIAKNIR 358

[Close]

BLAST of Carg18681 vs. Swiss-Prot
Match: sp|E0X9N4|C3H69_ARATH (Putative RING-type E3 ubiquitin transferase C3H69 OS=Arabidopsis thaliana OX=3702 GN=At3g63550 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 3   HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 33
           HA+ DGRLEE+ LRH+  +DG TVIAK+IR
Sbjct: 311 HAYHDGRLEEVVLRHLDAEDGQTVIAKDIR 340

[Close]

BLAST of Carg18681 vs. TrEMBL
Match: tr|A0A1S3CEC1|A0A1S3CEC1_CUCME (E3 ubiquitin-protein ligase makorin OS=Cucumis melo OX=3656 GN=LOC103499913 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-06
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 3   HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 33
           HAH DGRLEEI LRHIGN+DGLTVIAKN+R
Sbjct: 317 HAHRDGRLEEIALRHIGNEDGLTVIAKNLR 346

[Close]

BLAST of Carg18681 vs. TrEMBL
Match: tr|A0A0V0IGK5|A0A0V0IGK5_SOLCH (Putative zinc finger CCCH domain-containing protein 69-like OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.2e-04
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 3   HAHWDGRLEEITLRHIGNQDGLTVIAKNIRFCFVDLLLVVYFCSTLPFINLK 55
           H H DGRLEE+ LRH+G++DG TVIAKNIR    D L  +    T+ F N K
Sbjct: 320 HQHRDGRLEEVVLRHLGSEDGSTVIAKNIRLS--DFLRNLEIRXTVSFSNFK 369

[Close]

BLAST of Carg18681 vs. TrEMBL
Match: tr|A0A1U8ENT6|A0A1U8ENT6_CAPAN (zinc finger CCCH domain-containing protein 69-like OS=Capsicum annuum OX=4072 GN=LOC107845630 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.5e-04
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 3   HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 33
           H H DGRLEE+ LRH+G++DG TVIAKNIR
Sbjct: 312 HQHRDGRLEEVVLRHLGSEDGSTVIAKNIR 341

[Close]

BLAST of Carg18681 vs. TrEMBL
Match: tr|A0A2G3BEF8|A0A2G3BEF8_CAPCH (E3 ubiquitin-protein ligase makorin (Fragment) OS=Capsicum chinense OX=80379 GN=BC332_25710 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.5e-04
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 3   HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 33
           H H DGRLEE+ LRH+G++DG TVIAKNIR
Sbjct: 310 HQHRDGRLEEVVLRHLGSEDGSTVIAKNIR 339

[Close]

BLAST of Carg18681 vs. TrEMBL
Match: tr|A0A2G2YKL8|A0A2G2YKL8_CAPAN (E3 ubiquitin-protein ligase makorin (Fragment) OS=Capsicum annuum OX=4072 GN=T459_25373 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.5e-04
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 3   HAHWDGRLEEITLRHIGNQDGLTVIAKNIR 33
           H H DGRLEE+ LRH+G++DG TVIAKNIR
Sbjct: 310 HQHRDGRLEEVVLRHLGSEDGSTVIAKNIR 339

The following BLAST results are available for this feature:

BLAST of Carg18681 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954068.1	1.5e-08	100.00	E3 ubiquitin-protein ligase makorin-like isoform X2 [Cucurbita moschata] >XP_022...	[more]
XP_022991900.1	1.5e-08	100.00	E3 ubiquitin-protein ligase makorin-like isoform X2 [Cucurbita maxima] >XP_02299...	[more]
XP_023547952.1	1.5e-08	100.00	E3 ubiquitin-protein ligase makorin-like isoform X2 [Cucurbita pepo subsp. pepo]...	[more]
XP_011659786.1	4.0e-06	84.38	PREDICTED: E3 ubiquitin-protein ligase makorin [Cucumis sativus]	[more]
XP_022959903.1	4.0e-06	86.67	E3 ubiquitin-protein ligase makorin-like isoform X4 [Cucurbita moschata]	[more]

BLAST of Carg18681 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G08505.2	7.0e-05	60.00	zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]

BLAST of Carg18681 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5ZA07\|C3H41_ORYSJ	1.1e-04	70.00	E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
sp\|E0X9N4\|C3H69_ARATH	1.5e-04	66.67	Putative RING-type E3 ubiquitin transferase C3H69 OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Carg18681 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CEC1\|A0A1S3CEC1_CUCME	5.9e-06	86.67	E3 ubiquitin-protein ligase makorin OS=Cucumis melo OX=3656 GN=LOC103499913 PE=4...	[more]
tr\|A0A0V0IGK5\|A0A0V0IGK5_SOLCH	3.2e-04	53.85	Putative zinc finger CCCH domain-containing protein 69-like OS=Solanum chacoense...	[more]
tr\|A0A1U8ENT6\|A0A1U8ENT6_CAPAN	5.5e-04	73.33	zinc finger CCCH domain-containing protein 69-like OS=Capsicum annuum OX=4072 GN...	[more]
tr\|A0A2G3BEF8\|A0A2G3BEF8_CAPCH	5.5e-04	73.33	E3 ubiquitin-protein ligase makorin (Fragment) OS=Capsicum chinense OX=80379 GN=...	[more]
tr\|A0A2G2YKL8\|A0A2G2YKL8_CAPAN	5.5e-04	73.33	E3 ubiquitin-protein ligase makorin (Fragment) OS=Capsicum annuum OX=4072 GN=T45...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18681-RA	Carg18681-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18681	CmoCh08G005280	Cucurbita moschata (Rifu)	carcmoB0482

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18681	Silver-seed gourd	carcarB207
Carg18681	Silver-seed gourd	carcarB288
Carg18681	Silver-seed gourd	carcarB379
Carg18681	Silver-seed gourd	carcarB380
Carg18681	Silver-seed gourd	carcarB381
Carg18681	Silver-seed gourd	carcarB382
Carg18681	Silver-seed gourd	carcarB383
Carg18681	Cucumber (Gy14) v2	carcgybB0365
Carg18681	Cucumber (Gy14) v2	carcgybB0366
Carg18681	Cucumber (Gy14) v1	carcgyB0413
Carg18681	Cucurbita maxima (Rimu)	carcmaB0496
Carg18681	Cucurbita maxima (Rimu)	carcmaB0497
Carg18681	Cucurbita maxima (Rimu)	carcmaB0498
Carg18681	Cucurbita maxima (Rimu)	carcmaB0499
Carg18681	Cucurbita moschata (Rifu)	carcmoB0479
Carg18681	Cucurbita moschata (Rifu)	carcmoB0480
Carg18681	Cucurbita moschata (Rifu)	carcmoB0481
Carg18681	Cucurbita pepo (Zucchini)	carcpeB0493
Carg18681	Cucurbita pepo (Zucchini)	carcpeB0494
Carg18681	Cucurbita pepo (Zucchini)	carcpeB0495
Carg18681	Wild cucumber (PI 183967)	carcpiB0390
Carg18681	Wild cucumber (PI 183967)	carcpiB0391
Carg18681	Cucumber (Chinese Long) v2	carcuB0386
Carg18681	Cucumber (Chinese Long) v2	carcuB0387
Carg18681	Cucumber (Chinese Long) v3	carcucB0389
Carg18681	Cucumber (Chinese Long) v3	carcucB0390
Carg18681	Bottle gourd (USVL1VR-Ls)	carlsiB322
Carg18681	Bottle gourd (USVL1VR-Ls)	carlsiB321
Carg18681	Melon (DHL92) v3.5.1	carmeB0359
Carg18681	Melon (DHL92) v3.5.1	carmeB0360
Carg18681	Melon (DHL92) v3.6.1	carmedB0364
Carg18681	Melon (DHL92) v3.6.1	carmedB0365
Carg18681	Watermelon (Charleston Gray)	carwcgB0347
Carg18681	Watermelon (Charleston Gray)	carwcgB0345
Carg18681	Watermelon (Charleston Gray)	carwcgB0346
Carg18681	Watermelon (97103) v1	carwmB0344
Carg18681	Watermelon (97103) v1	carwmB0345
Carg18681	Watermelon (97103) v1	carwmB0346
Carg18681	Watermelon (97103) v2	carwmbB0369
Carg18681	Watermelon (97103) v2	carwmbB0370
Carg18681	Watermelon (97103) v2	carwmbB0371
Carg18681	Wax gourd	carwgoB0437
Carg18681	Wax gourd	carwgoB0438
Carg18681	Wax gourd	carwgoB0439