Carg18655 (gene) Silver-seed gourd

Overview
NameCarg18655
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionAuxin response factor
LocationCucurbita_argyrosperma_scaffold_147 : 380157 .. 380507 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATGGTTATTTTGTGTTCTGAACCAGGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAAGTAGGTTAGCCACTCAATAAGTGTTCGATTCATTTATACATTCAAATAATTTGGTTGTTAATACAATATTCTGTTTTGCAGTATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAGTTCTTCTGCAAAACTCTAACAGCTAGTGACACTAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGTGCGCATCACATCTCGTATTCTTTAA

mRNA sequence

ATGAGATGGTTATTTTGTGTTCTGAACCAGGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAGTTCTTCTGCAAAACTCTAACAGCTAGTGACACTAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGTGCGCATCACATCTCGTATTCTTTAA

Coding sequence (CDS)

ATGAGATGGTTATTTTGTGTTCTGAACCAGGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAGTTCTTCTGCAAAACTCTAACAGCTAGTGACACTAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGTGCGCATCACATCTCGTATTCTTTAA

Protein sequence

MRWLFCVLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLVRITSRIL
Homology
[Close]
BLAST of Carg18655 vs. NCBI nr
Match: XP_022937523.1 (auxin response factor 19-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 148.7 bits (374), Expect = 9.6e-33
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 81  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 140

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 141 FSVPRRAAEKIFPPL 155

[Close]
BLAST of Carg18655 vs. NCBI nr
Match: XP_022937522.1 (auxin response factor 19-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 148.7 bits (374), Expect = 9.6e-33
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 83  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 142

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 143 FSVPRRAAEKIFPPL 157

[Close]
BLAST of Carg18655 vs. NCBI nr
Match: XP_022965393.1 (auxin response factor 19-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 148.7 bits (374), Expect = 9.6e-33
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 83  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 142

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 143 FSVPRRAAEKIFPPL 157

[Close]
BLAST of Carg18655 vs. NCBI nr
Match: XP_022965395.1 (auxin response factor 19-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 148.7 bits (374), Expect = 9.6e-33
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 83  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 142

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 143 FSVPRRAAEKIFPPL 157

[Close]
BLAST of Carg18655 vs. NCBI nr
Match: XP_022965394.1 (auxin response factor 19-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 148.7 bits (374), Expect = 9.6e-33
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 7   VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 66
           V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG
Sbjct: 81  VILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGG 140

Query: 67  FSVPRRAAEKIFPPL 82
           FSVPRRAAEKIFPPL
Sbjct: 141 FSVPRRAAEKIFPPL 155

[Close]
BLAST of Carg18655 vs. TAIR10
Match: AT1G19220.1 (auxin response factor 19)

HSP 1 Score: 138.3 bits (347), Expect = 2.3e-33
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0 

Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     AD ETDEVYAQMTLQPVNKY++EALLASD+GLK NRQP EFFCKTLTAS
Sbjct: 74  LICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNRQPTEFFCKTLTAS 133

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFPPL
Sbjct: 134 DTSTHGGFSVPRRAAEKIFPPL 155

[Close]
BLAST of Carg18655 vs. TAIR10
Match: AT5G20730.1 (Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related)

HSP 1 Score: 136.3 bits (342), Expect = 8.9e-33
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0 

Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     ADPETDEVYAQMTLQPVNKY+++ALLASD+GLK NRQP EFFCKTLTAS
Sbjct: 75  LICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEFFCKTLTAS 134

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFP L
Sbjct: 135 DTSTHGGFSVPRRAAEKIFPAL 156

[Close]
BLAST of Carg18655 vs. TAIR10
Match: AT1G30330.2 (auxin response factor 6)

HSP 1 Score: 106.3 bits (264), Expect = 9.9e-24
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 0 

Query: 7   VLNQADPETDEVYAQMTLQPVNKYE-KEALLASDIGLKQNRQPAEFFCKTLTASDTSTHG 66
           V   AD ETDEVYAQMTLQP+N  E K+  L +++G+  +RQP  +FCKTLTASDTSTHG
Sbjct: 84  VTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGV-PSRQPTNYFCKTLTASDTSTHG 143

Query: 67  GFSVPRRAAEKIFPPL 82
           GFSVPRRAAEK+FPPL
Sbjct: 144 GFSVPRRAAEKVFPPL 158

[Close]
BLAST of Carg18655 vs. TAIR10
Match: AT5G37020.1 (auxin response factor 8)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-22
Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 0 

Query: 7   VLNQADPETDEVYAQMTLQPVNKYE-KEALLASDIGLKQNRQPAEFFCKTLTASDTSTHG 66
           V   AD ETDEVYAQMTLQP+   E KE  +  ++G+  ++QP+ +FCKTLTASDTSTHG
Sbjct: 81  VTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGI-PSKQPSNYFCKTLTASDTSTHG 140

Query: 67  GFSVPRRAAEKIFPPL 82
           GFSVPRRAAEK+FPPL
Sbjct: 141 GFSVPRRAAEKVFPPL 155

[Close]
BLAST of Carg18655 vs. TAIR10
Match: AT1G19850.1 (Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related)

HSP 1 Score: 99.8 bits (247), Expect = 9.3e-22
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 11  ADPETDEVYAQMTLQPVNKYEKEALLASDIG-LKQNRQPAEFFCKTLTASDTSTHGGFSV 70
           AD ++DE+YAQM+LQPV+  E++     D G L+ ++ P EFFCKTLTASDTSTHGGFSV
Sbjct: 117 ADKDSDEIYAQMSLQPVHS-ERDVFPVPDFGMLRGSKHPTEFFCKTLTASDTSTHGGFSV 176

Query: 71  PRRAAEKIFPPL 82
           PRRAAEK+FPPL
Sbjct: 177 PRRAAEKLFPPL 187

[Close]
BLAST of Carg18655 vs. Swiss-Prot
Match: sp|Q8RYC8|ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana OX=3702 GN=ARF19 PE=1 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 4.2e-32
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0 

Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     AD ETDEVYAQMTLQPVNKY++EALLASD+GLK NRQP EFFCKTLTAS
Sbjct: 74  LICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNRQPTEFFCKTLTAS 133

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFPPL
Sbjct: 134 DTSTHGGFSVPRRAAEKIFPPL 155

[Close]
BLAST of Carg18655 vs. Swiss-Prot
Match: sp|A3B9A0|ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF16 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-31
Identity = 63/71 (88.73%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 11  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVP 70
           AD ETDEVYAQMTLQPVNKY+++A+LAS++GLKQN+QPAEFFCKTLTASDTSTHGGFSVP
Sbjct: 86  ADSETDEVYAQMTLQPVNKYDRDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVP 145

Query: 71  RRAAEKIFPPL 82
           RRAAEKIFPPL
Sbjct: 146 RRAAEKIFPPL 156

[Close]
BLAST of Carg18655 vs. Swiss-Prot
Match: sp|P93022|ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana OX=3702 GN=ARF7 PE=1 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-31
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 0 

Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     ADPETDEVYAQMTLQPVNKY+++ALLASD+GLK NRQP EFFCKTLTAS
Sbjct: 75  LICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEFFCKTLTAS 134

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFP L
Sbjct: 135 DTSTHGGFSVPRRAAEKIFPAL 156

[Close]
BLAST of Carg18655 vs. Swiss-Prot
Match: sp|A2YAA5|ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica OX=39946 GN=ARF16 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.6e-31
Identity = 62/71 (87.32%), Postives = 69/71 (97.18%), Query Frame = 0 

Query: 11  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVP 70
           AD ETDEVY QMTLQPVNKY+++A+LAS++GLKQN+QPAEFFCKTLTASDTSTHGGFSVP
Sbjct: 86  ADSETDEVYVQMTLQPVNKYDRDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVP 145

Query: 71  RRAAEKIFPPL 82
           RRAAEKIFPPL
Sbjct: 146 RRAAEKIFPPL 156

[Close]
BLAST of Carg18655 vs. Swiss-Prot
Match: sp|Q6Z2W3|ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF5 PE=2 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-27
Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     ADP+TDEVYAQMTLQPVN Y KEAL  S++ LKQ R   EFFCKTLTAS
Sbjct: 96  LICLLHGVNLHADPDTDEVYAQMTLQPVNTYGKEALQISELALKQARPQMEFFCKTLTAS 155

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFPPL
Sbjct: 156 DTSTHGGFSVPRRAAEKIFPPL 177

[Close]
BLAST of Carg18655 vs. TrEMBL
Match: tr|A0A1S3CC20|A0A1S3CC20_CUCME (Auxin response factor OS=Cucumis melo OX=3656 GN=LOC103498967 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0 

Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQ+RQPAEFFCKTLTAS
Sbjct: 74  LICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTAS 133

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFPPL
Sbjct: 134 DTSTHGGFSVPRRAAEKIFPPL 155

[Close]
BLAST of Carg18655 vs. TrEMBL
Match: tr|A0A1S3CBQ4|A0A1S3CBQ4_CUCME (Auxin response factor OS=Cucumis melo OX=3656 GN=LOC103498967 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0 

Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQ+RQPAEFFCKTLTAS
Sbjct: 74  LICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTAS 133

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFPPL
Sbjct: 134 DTSTHGGFSVPRRAAEKIFPPL 155

[Close]
BLAST of Carg18655 vs. TrEMBL
Match: tr|A0A0A0LHN1|A0A0A0LHN1_CUCSA (Auxin response factor OS=Cucumis sativus OX=3659 GN=Csa_2G000030 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0 

Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQ+RQPAEFFCKTLTAS
Sbjct: 74  LICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTAS 133

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFPPL
Sbjct: 134 DTSTHGGFSVPRRAAEKIFPPL 155

[Close]
BLAST of Carg18655 vs. TrEMBL
Match: tr|Q6L8U3|Q6L8U3_CUCSA (Auxin response factor OS=Cucumis sativus OX=3659 GN=CsARF1 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0 

Query: 4   LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
           L C+L+     ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQ+RQPAEFFCKTLTAS
Sbjct: 74  LICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTAS 133

Query: 64  DTSTHGGFSVPRRAAEKIFPPL 82
           DTSTHGGFSVPRRAAEKIFPPL
Sbjct: 134 DTSTHGGFSVPRRAAEKIFPPL 155

[Close]
BLAST of Carg18655 vs. TrEMBL
Match: tr|A0A1U8IWB7|A0A1U8IWB7_GOSHI (Auxin response factor OS=Gossypium hirsutum OX=3635 GN=LOC107901036 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.1e-32
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0 

Query: 4  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTAS 63
          L C+L+     ADPETDEVYAQMTLQPVNKY+KEALLASDIGLKQ+RQPAEFFCKTLTAS
Sbjct: 18 LICMLHNVTLHADPETDEVYAQMTLQPVNKYDKEALLASDIGLKQSRQPAEFFCKTLTAS 77

Query: 64 DTSTHGGFSVPRRAAEKIFPPL 82
          DTSTHGGFSVPRRAAEKIFPPL
Sbjct: 78 DTSTHGGFSVPRRAAEKIFPPL 99

The following BLAST results are available for this feature:
BLAST of Carg18655 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937523.19.6e-3396.00auxin response factor 19-like isoform X2 [Cucurbita moschata][more]
XP_022937522.19.6e-3396.00auxin response factor 19-like isoform X1 [Cucurbita moschata][more]
XP_022965393.19.6e-3396.00auxin response factor 19-like isoform X1 [Cucurbita maxima][more]
XP_022965395.19.6e-3396.00auxin response factor 19-like isoform X3 [Cucurbita maxima][more]
XP_022965394.19.6e-3396.00auxin response factor 19-like isoform X2 [Cucurbita maxima][more]
BLAST of Carg18655 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G19220.12.3e-3382.93auxin response factor 19[more]
AT5G20730.18.9e-3381.71Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-relat... [more]
AT1G30330.29.9e-2469.74auxin response factor 6[more]
AT5G37020.11.1e-2267.11auxin response factor 8[more]
AT1G19850.19.3e-2266.67Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-relat... [more]
BLAST of Carg18655 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8RYC8|ARFS_ARATH4.2e-3282.93Auxin response factor 19 OS=Arabidopsis thaliana OX=3702 GN=ARF19 PE=1 SV=2[more]
sp|A3B9A0|ARFP_ORYSJ1.2e-3188.73Auxin response factor 16 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF16 PE=2 ... [more]
sp|P93022|ARFG_ARATH1.6e-3181.71Auxin response factor 7 OS=Arabidopsis thaliana OX=3702 GN=ARF7 PE=1 SV=2[more]
sp|A2YAA5|ARFP_ORYSI3.6e-3187.32Auxin response factor 16 OS=Oryza sativa subsp. indica OX=39946 GN=ARF16 PE=2 SV... [more]
sp|Q6Z2W3|ARFE_ORYSJ1.1e-2775.61Auxin response factor 5 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF5 PE=2 SV... [more]
BLAST of Carg18655 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CC20|A0A1S3CC20_CUCME1.8e-3289.02Auxin response factor OS=Cucumis melo OX=3656 GN=LOC103498967 PE=3 SV=1[more]
tr|A0A1S3CBQ4|A0A1S3CBQ4_CUCME1.8e-3289.02Auxin response factor OS=Cucumis melo OX=3656 GN=LOC103498967 PE=3 SV=1[more]
tr|A0A0A0LHN1|A0A0A0LHN1_CUCSA1.8e-3289.02Auxin response factor OS=Cucumis sativus OX=3659 GN=Csa_2G000030 PE=3 SV=1[more]
tr|Q6L8U3|Q6L8U3_CUCSA1.8e-3289.02Auxin response factor OS=Cucumis sativus OX=3659 GN=CsARF1 PE=2 SV=1[more]
tr|A0A1U8IWB7|A0A1U8IWB7_GOSHI4.1e-3287.80Auxin response factor OS=Gossypium hirsutum OX=3635 GN=LOC107901036 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015300DNA-bd_pseudobarrel_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18655-RACarg18655-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015300DNA-binding pseudobarrel domain superfamilyGENE3DG3DSA:2.40.330.10coord: 49..87
e-value: 1.4E-9
score: 39.7
IPR015300DNA-binding pseudobarrel domain superfamilySUPERFAMILYSSF101936DNA-binding pseudobarrel domaincoord: 41..84
NoneNo IPR availablePANTHERPTHR31384FAMILY NOT NAMEDcoord: 5..81
NoneNo IPR availablePANTHERPTHR31384:SF21AUXIN RESPONSE FACTOR 19-RELATEDcoord: 5..81

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg18655Silver-seed gourdcarcarB108
Carg18655Cucurbita maxima (Rimu)carcmaB1234
Carg18655Cucurbita maxima (Rimu)carcmaB1235
Carg18655Cucurbita maxima (Rimu)carcmaB1236
Carg18655Cucurbita moschata (Rifu)carcmoB1206
Carg18655Cucurbita moschata (Rifu)carcmoB1207
Carg18655Cucurbita pepo (Zucchini)carcpeB1246
Carg18655Cucurbita pepo (Zucchini)carcpeB1247
Carg18655Cucurbita pepo (Zucchini)carcpeB1248
Carg18655Bottle gourd (USVL1VR-Ls)carlsiB817
Carg18655Watermelon (Charleston Gray)carwcgB0875
Carg18655Watermelon (97103) v1carwmB0897
Carg18655Wax gourdcarwgoB1043