Carg18647 (gene) Silver-seed gourd

Overview
NameCarg18647
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING-box protein
LocationCucurbita_argyrosperma_scaffold_147 : 340086 .. 342119 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACATAATGATGTAATTATAATATTACACTATAAAACAAACTTAAATGGTAATAACAAATTTCATTGAAAATAAAAAATTCAAGACGCAGCTACAGCTACAGGAAATCGGTCCGCCCGTGTCAAGGAGACGGATTAAGAAGCATCTTTCTTGCAACTTTCCTTTTTGTGCCAACCATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCAGTGCCGGTCCTTCGTCCACCAAGAAACCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGCTCTATGGGCATGGGGTAATTACGGAACCCTAATCTTTAGCCCTTCACACGGCGTTGCTATTACTGCTCTCACTCTCCCGTTTTGCCTTCTTACATCGGAATCCTCCTCTCTAATTTTTGTGTTATTCATTTCTTAATTCAGATATCGTTGTCGATAACTGTGCGATCTGCAGAAATCATATCATGGATCTTTGTAAGTTTATCATCATTTGATCAAGTTCTAAGATATCTGGAATGATCTTCCTCTTAATTTTCTATATTATTTGTATTTTCTTTAGCCATTCACCATTGTTTGTTATGTAGGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGTACGTTTGTTTTTTTTATAAAAACATTTCCTCTCCCTATCCCCAATCCATTCACGCAGACACAATGTGCTATTATTTTCTACCTCGCTCCTTACGGATACTGAGGTGGATGATTGGGCCTCTATGCTGAATATTTAAAGCCATGTCATATTTTCTAATTAGGAGGATGTCGAAGTGCGTTCCCTTCATATCAATGGTTGCTTTTCTGTCAATTCCTCAGACCTTTAGCTTGTTTTTTAACACAGCCATACTGACCTAATCCGTAGTAAGCTAACCTGGGAGGCCAAAATTCTGGAAAAGTGAAAGTCTTCCTATGGATTCTGATACAAGGGAAACTGAGTACGTGTGAGAAGCTTCAATGAAGCGTTCCGAATGGCTGGTGATGTATCCTGTGCAGGAAAGACAAGAGAGCCATTTTCATGTTTTTGTCCACTGCCCATTTTCTGCCGCTATTTGTTGAGCTAAGCATTGTTATGTATTTGGTATGAGTTGATGCTCCCGTAAGACCTCTGAGAATTACTGCCATCCAACTGTTAGGGCATAAGCTAAATGGTCAAATTATAATCAGAGACTTTTTAAGAGGGTTGATTCTAGCTCGGAAAGCTTTTGGGATCTCAGGAAACTCTATTAAGAACTGAACTTGTTATTTAACTTAAAAAGATTGCCTTTTGGATTGATTGATTATTACTCTATCCAACTTACAGTATGAAACATTATTTTGCAATCGCCCTTGATGTGGAATTATAGCAGGAGCCAACGACTGATGATACCTGGTGTTGAATTTTTATATATTTGTAGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACGCGTCAAGTTTGCCCGTTGGGTATGCATTTCACATTCTTGCCCAGCCTTTCAACCACAATTTTTTTTCTAAAAAAATGAATTTTGGTAATTGAAGAAAGCTTTGCCATTTTACAGATAATAGCGAGTGGGAATTTCAGAAGTACGGTCACTAGAACTTTGCTGCTGAGAATATGGATCCTTAAATTCTCATGGATCTCTAATGTTGTCGACGATGAACTCTCTCCATACATGGTTTCTGAAATTTGCGATCTGAAGATGCATTTTGTTGAGCAACTACAATTGTCCAGAGAATTATGTGATTTTATTTGGGAGTTGTTTGTAGAAATAGGCTAGCACTCAAACGTTAGTTCTTGTTTTACCGTTTACCATTTCTGTACTTGTATTTATGTTAACATCTCACTTGGTTCATCTGGAAAATTTGGATCTTATTGTTGCCTATTTGCTCTTCGGTTCTTGTTTGTCTATCGGATATTCTTCTTCCCATAATATAATCGTGTTCTTCACCGAATGAATTCTTCTAAAGTGATCTTACTTTAG

mRNA sequence

ACATAATGATGTAATTATAATATTACACTATAAAACAAACTTAAATGGTAATAACAAATTTCATTGAAAATAAAAAATTCAAGACGCAGCTACAGCTACAGGAAATCGGTCCGCCCGTGTCAAGGAGACGGATTAAGAAGCATCTTTCTTGCAACTTTCCTTTTTGTGCCAACCATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCAGTGCCGGTCCTTCGTCCACCAAGAAACCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGCTCTATGGGCATGGGATATCGTTGTCGATAACTGTGCGATCTGCAGAAATCATATCATGGATCTTTGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACGCGTCAAGTTTGCCCGTTGGATAATAGCGAGTGGGAATTTCAGAAGTACGGTCACTAGAACTTTGCTGCTGAGAATATGGATCCTTAAATTCTCATGGATCTCTAATGTTGTCGACGATGAACTCTCTCCATACATGGTTTCTGAAATTTGCGATCTGAAGATGCATTTTGTTGAGCAACTACAATTGTCCAGAGAATTATGTGATTTTATTTGGGAGTTGTTTGTAGAAATAGGCTAGCACTCAAACGTTAGTTCTTGTTTTACCGTTTACCATTTCTGTACTTGTATTTATGTTAACATCTCACTTGGTTCATCTGGAAAATTTGGATCTTATTGTTGCCTATTTGCTCTTCGGTTCTTGTTTGTCTATCGGATATTCTTCTTCCCATAATATAATCGTGTTCTTCACCGAATGAATTCTTCTAAAGTGATCTTACTTTAG

Coding sequence (CDS)

ATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCAGTGCCGGTCCTTCGTCCACCAAGAAACCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGCTCTATGGGCATGGGATATCGTTGTCGATAACTGTGCGATCTGCAGAAATCATATCATGGATCTTTGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACGCGTCAAGTTTGCCCGTTGGATAATAGCGAGTGGGAATTTCAGAAGTACGGTCACTAG

Protein sequence

MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Homology
[Close]
BLAST of Carg18647 vs. NCBI nr
Match: XP_022937741.1 (RING-box protein 1a-like [Cucurbita moschata] >XP_022966069.1 RING-box protein 1a-like isoform X1 [Cucurbita maxima] >XP_023537816.1 RING-box protein 1a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 252.3 bits (643), Expect = 7.9e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 114

[Close]
BLAST of Carg18647 vs. NCBI nr
Match: XP_015889019.1 (RING-box protein 1a [Ziziphus jujuba] >XP_022154746.1 RING-box protein 1a-like [Momordica charantia])

HSP 1 Score: 248.8 bits (634), Expect = 8.7e-63
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDV MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Carg18647 vs. NCBI nr
Match: XP_007218617.1 (RING-box protein 1a [Prunus persica] >XP_008232851.1 PREDICTED: RING-box protein 1a-like [Prunus mume] >XP_008232852.1 PREDICTED: RING-box protein 1a-like [Prunus mume] >ONI22810.1 hypothetical protein PRUPE_2G152700 [Prunus persica] >PQP92865.1 RING-box protein 1a [Prunus yedoensis var. nudiflora])

HSP 1 Score: 247.7 bits (631), Expect = 1.9e-62
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDV MVPVGEASSSAGPSSTK+PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVPMVPVGEASSSAGPSSTKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Carg18647 vs. NCBI nr
Match: XP_004306863.1 (PREDICTED: RING-box protein 1a-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 246.9 bits (629), Expect = 3.3e-62
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDV M+PVGE SSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVPMIPVGEGSSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Carg18647 vs. NCBI nr
Match: XP_022933228.1 (RING-box protein 1a [Cucurbita moschata] >XP_022960807.1 RING-box protein 1a [Cucurbita moschata] >XP_022968584.1 RING-box protein 1a [Cucurbita maxima] >XP_022988432.1 RING-box protein 1a [Cucurbita maxima] >XP_023530609.1 RING-box protein 1a [Cucurbita pepo subsp. pepo] >XP_023515504.1 RING-box protein 1a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.7 bits (626), Expect = 7.4e-62
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDV MVP GEASSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Carg18647 vs. TAIR10
Match: AT5G20570.2 (RING-box 1)

HSP 1 Score: 218.8 bits (556), Expect = 1.8e-57
Identity = 106/139 (76.26%), Postives = 109/139 (78.42%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 60
           +DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 4   LDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLC 63

Query: 61  IECQANQASATSEECTVAW------------------------GVCNHAFHFHCISRWLK 115
           IECQANQASATSEECTVAW                        GVCNHAFHFHCISRWLK
Sbjct: 64  IECQANQASATSEECTVAWEDDQNNCNKYFCILDCSMKDDHLEGVCNHAFHFHCISRWLK 123

[Close]
BLAST of Carg18647 vs. TAIR10
Match: AT3G42830.1 (RING/U-box superfamily protein)

HSP 1 Score: 205.7 bits (522), Expect = 1.5e-53
Identity = 96/115 (83.48%), Postives = 103/115 (89.57%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 60
           ++SDV M   GE+SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 4   LNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDLC 63

Query: 61  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           IEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 64  IECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]
BLAST of Carg18647 vs. TAIR10
Match: AT3G05870.1 (anaphase-promoting complex/cyclosome 11)

HSP 1 Score: 81.6 bits (200), Expect = 3.3e-16
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0 

Query: 24  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 83
           K K   I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNH
Sbjct: 2   KVKILRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCK-----LPGDDCPLIWGACNH 61

Query: 84  AFHFHCISRWL--KTRQV-CPLDNSEWEFQK 112
           AFH HCI +W+  +T Q  CP+   EW+F++
Sbjct: 62  AFHLHCILKWVNSQTSQAHCPMCRREWQFKE 87

[Close]
BLAST of Carg18647 vs. TAIR10
Match: AT3G47180.1 (RING/U-box superfamily protein)

HSP 1 Score: 44.7 bits (104), Expect = 4.5e-05
Identity = 18/51 (35.29%), Postives = 29/51 (56.86%), Query Frame = 0 

Query: 56  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE 107
           +D C+ C   Q      E  V    C+H +H  CI++WL+T+++CP+  SE
Sbjct: 159 IDRCVVC---QMEFEERESLVVLRPCDHPYHSECITKWLETKKICPICCSE 206

[Close]
BLAST of Carg18647 vs. TAIR10
Match: AT3G63530.1 (RING/U-box superfamily protein)

HSP 1 Score: 42.0 bits (97), Expect = 2.9e-04
Identity = 14/26 (53.85%), Postives = 18/26 (69.23%), Query Frame = 0 

Query: 81  CNHAFHFHCISRWLKTRQVCPLDNSE 107
           C H +H  CIS+WL   +VCP+ NSE
Sbjct: 215 CKHVYHSECISKWLSINKVCPVCNSE 240

[Close]
BLAST of Carg18647 vs. Swiss-Prot
Match: sp|Q940X7|RBX1A_ARATH (RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 2.8e-60
Identity = 106/115 (92.17%), Postives = 109/115 (94.78%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 60
           +DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 4   LDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLC 63

Query: 61  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118

[Close]
BLAST of Carg18647 vs. Swiss-Prot
Match: sp|Q9M2B0|RBX1B_ARATH (RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.8e-52
Identity = 96/115 (83.48%), Postives = 103/115 (89.57%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 60
           ++SDV M   GE+SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 4   LNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDLC 63

Query: 61  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           IEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 64  IECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]
BLAST of Carg18647 vs. Swiss-Prot
Match: sp|P62877|RBX1_HUMAN (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.6e-52
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = 0 

Query: 7   MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 66
           M    +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 67  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]
BLAST of Carg18647 vs. Swiss-Prot
Match: sp|P62878|RBX1_MOUSE (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.6e-52
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = 0 

Query: 7   MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 66
           M    +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 67  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]
BLAST of Carg18647 vs. Swiss-Prot
Match: sp|Q9W5E1|RBX1A_DROME (RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 6.2e-52
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0 

Query: 19  PSSTKK--PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 78
           PSS+ K   KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV
Sbjct: 11  PSSSSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 70

Query: 79  AWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           AWGVCNHAFHFHCISRWLKTRQVCPLDN EW+FQKYGH
Sbjct: 71  AWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYGH 108

[Close]
BLAST of Carg18647 vs. TrEMBL
Match: tr|M5X2V0|M5X2V0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G152700 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-62
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDV MVPVGEASSSAGPSSTK+PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVPMVPVGEASSSAGPSSTKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Carg18647 vs. TrEMBL
Match: tr|A0A2P6SGE9|A0A2P6SGE9_ROSCH (Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0351851 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.9e-62
Identity = 109/114 (95.61%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDV M+PVGE SSSAGPSSTK+PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVPMIPVGEGSSSAGPSSTKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Carg18647 vs. TrEMBL
Match: tr|A0A1S3BQE3|A0A1S3BQE3_CUCME (RING-box protein 1a OS=Cucumis melo OX=3656 GN=LOC103492371 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.1e-61
Identity = 109/114 (95.61%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +D+DV MVP GEASSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Carg18647 vs. TrEMBL
Match: tr|A0A0A0LWN9|A0A0A0LWN9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G597030 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.1e-61
Identity = 109/114 (95.61%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +D+DV MVP GEASSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Carg18647 vs. TrEMBL
Match: tr|A0A2N9HDW3|A0A2N9HDW3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37671 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDV MVPVGEASSSAGPSS+KK KRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVPMVPVGEASSSAGPSSSKKNKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

The following BLAST results are available for this feature:
BLAST of Carg18647 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937741.17.9e-64100.00RING-box protein 1a-like [Cucurbita moschata] >XP_022966069.1 RING-box protein 1... [more]
XP_015889019.18.7e-6398.25RING-box protein 1a [Ziziphus jujuba] >XP_022154746.1 RING-box protein 1a-like [... [more]
XP_007218617.11.9e-6297.37RING-box protein 1a [Prunus persica] >XP_008232851.1 PREDICTED: RING-box protein... [more]
XP_004306863.13.3e-6296.49PREDICTED: RING-box protein 1a-like [Fragaria vesca subsp. vesca][more]
XP_022933228.17.4e-6296.49RING-box protein 1a [Cucurbita moschata] >XP_022960807.1 RING-box protein 1a [Cu... [more]
BLAST of Carg18647 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20570.21.8e-5776.26RING-box 1[more]
AT3G42830.11.5e-5383.48RING/U-box superfamily protein[more]
AT3G05870.13.3e-1639.56anaphase-promoting complex/cyclosome 11[more]
AT3G47180.14.5e-0535.29RING/U-box superfamily protein[more]
AT3G63530.12.9e-0453.85RING/U-box superfamily protein[more]
BLAST of Carg18647 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q940X7|RBX1A_ARATH2.8e-6092.17RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1[more]
sp|Q9M2B0|RBX1B_ARATH2.8e-5283.48RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1[more]
sp|P62877|RBX1_HUMAN3.6e-5283.33E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1[more]
sp|P62878|RBX1_MOUSE3.6e-5283.33E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1[more]
sp|Q9W5E1|RBX1A_DROME6.2e-5291.84RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1[more]
BLAST of Carg18647 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|M5X2V0|M5X2V0_PRUPE1.3e-6297.37Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G152700 PE=4 SV=1[more]
tr|A0A2P6SGE9|A0A2P6SGE9_ROSCH4.9e-6295.61Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm... [more]
tr|A0A1S3BQE3|A0A1S3BQE3_CUCME1.1e-6195.61RING-box protein 1a OS=Cucumis melo OX=3656 GN=LOC103492371 PE=4 SV=1[more]
tr|A0A0A0LWN9|A0A0A0LWN9_CUCSA1.1e-6195.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G597030 PE=4 SV=1[more]
tr|A0A2N9HDW3|A0A2N9HDW3_FAGSY1.9e-6196.49Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37671 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR024766Znf_RING_H2
IPR013083Znf_RING/FYVE/PHD
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18647-RACarg18647-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 15..114
e-value: 4.8E-35
score: 121.6
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 46..104
e-value: 2.3E-25
score: 88.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR11210:SF21SUBFAMILY NOT NAMEDcoord: 2..114
NoneNo IPR availablePANTHERPTHR11210RING BOXcoord: 2..114
NoneNo IPR availableCDDcd16485mRING-H2-C3H2C2D_RBX1coord: 46..107
e-value: 8.37012E-43
score: 135.96
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 26..111
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 59..104
score: 9.303

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18647Cla011156Watermelon (97103) v1carwmB0897
Carg18647Cla016864Watermelon (97103) v1carwmB0898
Carg18647MELO3C004656Melon (DHL92) v3.5.1carmeB0883
Carg18647ClCG03G015040Watermelon (Charleston Gray)carwcgB0875
Carg18647ClCG11G001410Watermelon (Charleston Gray)carwcgB0874
Carg18647CSPI02G00120Wild cucumber (PI 183967)carcpiB0935
Carg18647CmaCh10G007670Cucurbita maxima (Rimu)carcmaB1234
Carg18647CmaCh11G007340Cucurbita maxima (Rimu)carcmaB1235
Carg18647CmaCh12G013250Cucurbita maxima (Rimu)carcmaB1236
Carg18647CmoCh12G013550Cucurbita moschata (Rifu)carcmoB1207
Carg18647CmoCh11G007470Cucurbita moschata (Rifu)carcmoB1206
Carg18647Lsi06G003390Bottle gourd (USVL1VR-Ls)carlsiB817
Carg18647Lsi11G001550Bottle gourd (USVL1VR-Ls)carlsiB816
Carg18647Cp4.1LG07g10600Cucurbita pepo (Zucchini)carcpeB1248
Carg18647Cp4.1LG04g11220Cucurbita pepo (Zucchini)carcpeB1247
Carg18647Cp4.1LG18g03080Cucurbita pepo (Zucchini)carcpeB1246
Carg18647CsGy2G000150Cucumber (Gy14) v2carcgybB0887
Carg18647MELO3C004656.2Melon (DHL92) v3.6.1carmedB0891
Carg18647Cla97C11G207790Watermelon (97103) v2carwmbB0937
Carg18647Bhi06G001377Wax gourdcarwgoB1041
Carg18647Bhi02G001505Wax gourdcarwgoB1043
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg18647Carg12955Silver-seed gourdcarcarB108
The following block(s) are covering this gene:
GeneOrganismBlock
Carg18647Silver-seed gourdcarcarB528
Carg18647Cucumber (Gy14) v1carcgyB1014
Carg18647Cucurbita maxima (Rimu)carcmaB1237
Carg18647Cucurbita moschata (Rifu)carcmoB1208
Carg18647Cucurbita pepo (Zucchini)carcpeB1244