Carg18642 (gene) Silver-seed gourd

Overview
NameCarg18642
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUBP1-associated proteins 1C
LocationCucurbita_argyrosperma_scaffold_147 : 318086 .. 320460 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAAACCCTAGACGGAACTCGTCTTGTCGCTGCTGTATCTCACAAATCCCAAATCCGCCTTTGTCACTACGGGCTTGGTAGAGAGCAAATATGGTGTGGTTTCAGTGCGAAGACTGCGGAGACAACCTCAAGAAACCCAAGTTGCCGAATCACTTCAGAACGTGTTCCGCTACCAAGGTTTTGATTCTCTCTTTCCTCGAACAAACGGAAATAGGAGAATATGCATTTTTCCACAAGTTATTCTGAAGGAAAAATTCGTTTTCTCCGGTTTTCCCCTTCAACGGAAGTTTGATTCATAGAATTCTACCATGGACATGATTTGGGGCGCATTTTGATTTCGTCTTATTGTTTTCGTTTATAATATTCTTTTCTTTGTTTTCGTCTTATTCGTTTCTGTAATTTCCTGTAGCTGTCTTGCATCGATTGTGGACAAACCTTTGGGCAGGAAAGCGTACAAGGCCATACTCAATGTATTACTGAAGCGGTTAGAATCTATTATCTATACTCCTGTTATTCTACTGGTTAAAAGCGAATTGCTTCGAACTACAAGTTGATCCTATATGTGCTTATGAAAATTACTTCTGTAAAATGTTTGTTTGGTAGCCTGTTAGTAATCTGATCATGGTCGGTTCCATACAAAATCCACGTACATTGCTGCTGTAGCTTCAGCAGGTCATCGGTGTTGTTTTTCTTGTTACAAGTTTTGCCTACTTCTTGCAGGAAAAATATGGTCCAAAGGGGCAAGGGGCAGCCATTAATGTCACCACCCCGAAGTCCAACAAGGATTCAAAACAGCAACCAGATTTTGACATTCTCGTTGGATTGTCCAATCGCCCTCCTTGGTTCTGCAGGTATCTTTATTTATTGTTCTGTTAAACATATTACTCCTTGTTGCATATGAGCCTACGTACCTATTGATATGTAATGTTAATTGTTGGTGGATAAACATATTTTAGATTAATGGACGTAATTTTTTTGTTTAAAGAGTTAATATTTCAATGGTTGTTAGAATTAGAGAGCGCTTGAAATATGTAATGATGATTTATTGAGATTGGCTACCTCGTTCTAAGACGATTTTTGTGCATGTACACTATGTATCATGTGTTTTTTTGCAGTCTTTGCAATACCAAGGCAACTAGTAAACAGACTTTGCTGCTTCATGCAGAAGGAAAGAAGCACAAAGGAAAAGCCCGTGGGTTTCATGCAGCGAATAAACAATCTAATCAGACGGAGAAAGCTGTTTCGAATAAAATGCCTGCAGTTGAAGAAACTCCCAAAGATGAAGTAGTTGAAAATGGACATGTTGGAGCAGAAAAATCGAAAGATCAGCTTAAAGCTGAAAGTGAACTTGGAAACTTGGAATCAGAAAATGGTACGTCACATACAAAGAAAAAGAGGAAACTTGATGATGGTTCGACAGAAAAGACTAAAGACGATGACCCAAATAGAGGTAATGGGGAGGTTATTCAGGCAACCAAAGCCGAGATTAAGCCAATAAAGGATGAGATCACAGTATCCAAATCTCTGAAAGAAAAGAAGATCAAGTGGAAAAAGCTGATAACATCAATTTTGAAATCTGTACGTTTTGTGCAATTCTCTTATTTTCATATTTCTTGTCATTCTAATGATGGTCAATGATAATTTGTTTCATATAGTATTCTTGATTATCTAAGTTTTTCTTAAAATATTTTCTTTGATGGAATGGTCCCCGTGGTGAAGATATGTTAATTGATTATTCTCATAACGACCGATTCTATTGATACCGGCAGTATAGCTATAGTGTAACCCTTGGGAAGAAGCGAAATACCACCTTTTTGCATCAGTAATATTCCTCTTGCTGTCATTTTTTCTAACATACTACTGTTTATTTTATTTATTTTTATTTTTTTTTTGTTGGGTATATATGACAGAGTCCTGACGGTGTTCTCAAGATGTCAAAACTAAGAAAACTTACTCTCAAGTCTATTCACGAATCTGGTGTCACAGGAGATGAAACTAAACTTGTTGAGATGCTCGAGCAAAAGGTTTGCTTTTCTGATCTATATTTTCTAAATCATTTATTGTCTATTTATGAGTTTTTGGAAGTACGGTTGAATTTCTTCGAGCATCATTCCATTTGCTAACGATGTAACCTGTGACTGCCAGATTGATTCAAGTTCAAAATTTGCCGTTGAGAAGAAATACGTTCGGCTAGCAGCTAAGGCTTAAACGAAACGCCATTTCTGTAGCATTGCAAATCAAATTCTGCTGCATTTGCTTGCCCATTTTTGTCTAGTGATTTTTAGACGTTTATTATAAGTTTACTTCATTGGAGGAGATGTAGATGACATGTTTTATGAATGAGTTAATGAAATATTCAGTCATTTTGGGATCC

mRNA sequence

TAAAAACCCTAGACGGAACTCGTCTTGTCGCTGCTGTATCTCACAAATCCCAAATCCGCCTTTGTCACTACGGGCTTGGTAGAGAGCAAATATGGTGTGGTTTCAGTGCGAAGACTGCGGAGACAACCTCAAGAAACCCAAGTTGCCGAATCACTTCAGAACGTGTTCCGCTACCAAGCTGTCTTGCATCGATTGTGGACAAACCTTTGGGCAGGAAAGCGTACAAGGCCATACTCAATGTATTACTGAAGCGGAAAAATATGGTCCAAAGGGGCAAGGGGCAGCCATTAATGTCACCACCCCGAAGTCCAACAAGGATTCAAAACAGCAACCAGATTTTGACATTCTCGTTGGATTGTCCAATCGCCCTCCTTGGTTCTGCAGTCTTTGCAATACCAAGGCAACTAGTAAACAGACTTTGCTGCTTCATGCAGAAGGAAAGAAGCACAAAGGAAAAGCCCGTGGGTTTCATGCAGCGAATAAACAATCTAATCAGACGGAGAAAGCTGTTTCGAATAAAATGCCTGCAGTTGAAGAAACTCCCAAAGATGAAGTAGTTGAAAATGGACATGTTGGAGCAGAAAAATCGAAAGATCAGCTTAAAGCTGAAAGTGAACTTGGAAACTTGGAATCAGAAAATGGTACGTCACATACAAAGAAAAAGAGGAAACTTGATGATGGTTCGACAGAAAAGACTAAAGACGATGACCCAAATAGAGGTAATGGGGAGGTTATTCAGGCAACCAAAGCCGAGATTAAGCCAATAAAGGATGAGATCACAGTATCCAAATCTCTGAAAGAAAAGAAGATCAAGTGGAAAAAGCTGATAACATCAATTTTGAAATCTAGTCCTGACGGTGTTCTCAAGATGTCAAAACTAAGAAAACTTACTCTCAAGTCTATTCACGAATCTGGTGTCACAGGAGATGAAACTAAACTTGTTGAGATGCTCGAGCAAAAGATTGATTCAAGTTCAAAATTTGCCGTTGAGAAGAAATACGTTCGGCTAGCAGCTAAGGCTTAAACGAAACGCCATTTCTGTAGCATTGCAAATCAAATTCTGCTGCATTTGCTTGCCCATTTTTGTCTAGTGATTTTTAGACGTTTATTATAAGTTTACTTCATTGGAGGAGATGTAGATGACATGTTTTATGAATGAGTTAATGAAATATTCAGTCATTTTGGGATCC

Coding sequence (CDS)

ATGGTGTGGTTTCAGTGCGAAGACTGCGGAGACAACCTCAAGAAACCCAAGTTGCCGAATCACTTCAGAACGTGTTCCGCTACCAAGCTGTCTTGCATCGATTGTGGACAAACCTTTGGGCAGGAAAGCGTACAAGGCCATACTCAATGTATTACTGAAGCGGAAAAATATGGTCCAAAGGGGCAAGGGGCAGCCATTAATGTCACCACCCCGAAGTCCAACAAGGATTCAAAACAGCAACCAGATTTTGACATTCTCGTTGGATTGTCCAATCGCCCTCCTTGGTTCTGCAGTCTTTGCAATACCAAGGCAACTAGTAAACAGACTTTGCTGCTTCATGCAGAAGGAAAGAAGCACAAAGGAAAAGCCCGTGGGTTTCATGCAGCGAATAAACAATCTAATCAGACGGAGAAAGCTGTTTCGAATAAAATGCCTGCAGTTGAAGAAACTCCCAAAGATGAAGTAGTTGAAAATGGACATGTTGGAGCAGAAAAATCGAAAGATCAGCTTAAAGCTGAAAGTGAACTTGGAAACTTGGAATCAGAAAATGGTACGTCACATACAAAGAAAAAGAGGAAACTTGATGATGGTTCGACAGAAAAGACTAAAGACGATGACCCAAATAGAGGTAATGGGGAGGTTATTCAGGCAACCAAAGCCGAGATTAAGCCAATAAAGGATGAGATCACAGTATCCAAATCTCTGAAAGAAAAGAAGATCAAGTGGAAAAAGCTGATAACATCAATTTTGAAATCTAGTCCTGACGGTGTTCTCAAGATGTCAAAACTAAGAAAACTTACTCTCAAGTCTATTCACGAATCTGGTGTCACAGGAGATGAAACTAAACTTGTTGAGATGCTCGAGCAAAAGATTGATTCAAGTTCAAAATTTGCCGTTGAGAAGAAATACGTTCGGCTAGCAGCTAAGGCTTAA

Protein sequence

MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPKGQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHKGKARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLESENGTSHTKKKRKLDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKEKKIKWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEMLEQKIDSSSKFAVEKKYVRLAAKA
Homology
[Close]
BLAST of Carg18642 vs. NCBI nr
Match: XP_022937737.1 (UBP1-associated proteins 1C [Cucurbita moschata])

HSP 1 Score: 596.7 bits (1537), Expect = 4.6e-167
Identity = 306/310 (98.71%), Postives = 308/310 (99.35%), Query Frame = 0 

Query: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60
           MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60

Query: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120
           GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK
Sbjct: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120

Query: 121 GKARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLE 180
           GKARGFHAANKQSNQ E AVS+KMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLE
Sbjct: 121 GKARGFHAANKQSNQMEDAVSDKMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLE 180

Query: 181 SENGTSHTKKKRKLDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKEKKI 240
           SENGTSHTKKKRKLDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKEKKI
Sbjct: 181 SENGTSHTKKKRKLDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKEKKI 240

Query: 241 KWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEMLEQKIDSSSKFAVE 300
           KWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEMLEQKI+SSSKFAVE
Sbjct: 241 KWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEMLEQKINSSSKFAVE 300

Query: 301 KKYVRLAAKA 311
           KKYVRLAAKA
Sbjct: 301 KKYVRLAAKA 310

[Close]
BLAST of Carg18642 vs. NCBI nr
Match: XP_023538491.1 (UBP1-associated proteins 1C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 594.3 bits (1531), Expect = 2.3e-166
Identity = 304/310 (98.06%), Postives = 309/310 (99.68%), Query Frame = 0 

Query: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60
           MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60

Query: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120
           GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK
Sbjct: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120

Query: 121 GKARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLE 180
           GKARGFHAANKQSNQTE+AVS+KMPAVEETPKDEVVENGHVG+EKSKDQLKAE+ELGNLE
Sbjct: 121 GKARGFHAANKQSNQTEEAVSDKMPAVEETPKDEVVENGHVGSEKSKDQLKAETELGNLE 180

Query: 181 SENGTSHTKKKRKLDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKEKKI 240
           SENGTSHTKKKRKLDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKEKKI
Sbjct: 181 SENGTSHTKKKRKLDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKEKKI 240

Query: 241 KWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEMLEQKIDSSSKFAVE 300
           KWKKLITSILKSSPDGVLKMSKLRKLTLKSI ESGVTGDETKLVEMLEQKI+SSSKFAVE
Sbjct: 241 KWKKLITSILKSSPDGVLKMSKLRKLTLKSIRESGVTGDETKLVEMLEQKINSSSKFAVE 300

Query: 301 KKYVRLAAKA 311
           KKYVRLAAKA
Sbjct: 301 KKYVRLAAKA 310

[Close]
BLAST of Carg18642 vs. NCBI nr
Match: XP_022965441.1 (UBP1-associated proteins 1C [Cucurbita maxima])

HSP 1 Score: 577.8 bits (1488), Expect = 2.2e-161
Identity = 296/310 (95.48%), Postives = 304/310 (98.06%), Query Frame = 0 

Query: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60
           MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60

Query: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120
           GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK
Sbjct: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120

Query: 121 GKARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLE 180
           GKARGFHAANKQ+   E+AVS+KMPAVEETPKD+VVENGHVGAEK KDQLKAESELG+LE
Sbjct: 121 GKARGFHAANKQNQTEEEAVSDKMPAVEETPKDDVVENGHVGAEKLKDQLKAESELGHLE 180

Query: 181 SENGTSHTKKKRKLDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKEKKI 240
           S+NGTSHTKKKRKLDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKEKKI
Sbjct: 181 SDNGTSHTKKKRKLDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKEKKI 240

Query: 241 KWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEMLEQKIDSSSKFAVE 300
           KWKKLITSILKSSPDGVLK+SKLRKLTLKSI ESG TGDETKLVEMLEQKI+SSSKFAVE
Sbjct: 241 KWKKLITSILKSSPDGVLKISKLRKLTLKSIRESGDTGDETKLVEMLEQKINSSSKFAVE 300

Query: 301 KKYVRLAAKA 311
           KKYVRLAAKA
Sbjct: 301 KKYVRLAAKA 310

[Close]
BLAST of Carg18642 vs. NCBI nr
Match: XP_008459586.1 (PREDICTED: UBP1-associated proteins 1C [Cucumis melo])

HSP 1 Score: 511.5 bits (1316), Expect = 2.0e-141
Identity = 267/316 (84.49%), Postives = 284/316 (89.87%), Query Frame = 0 

Query: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60
           MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60

Query: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120
           GQGAA++VTTPKSNKDSKQQPDFDILVGLS RPPWFCSLCNTKATSKQTLLLHAEGKKHK
Sbjct: 61  GQGAAMSVTTPKSNKDSKQQPDFDILVGLSERPPWFCSLCNTKATSKQTLLLHAEGKKHK 120

Query: 121 GKARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLE 180
            KARGFHAA KQSNQTE+ V ++ P   +TPK E  ENGHVGAEKS+DQL+A+SELG LE
Sbjct: 121 AKARGFHAAKKQSNQTEETVPDQKPTAVDTPKCEGAENGHVGAEKSQDQLEAKSELGKLE 180

Query: 181 SENGTSHTKKKRK---LDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKE 240
            ENG SHTKKKRK   +D  STEKT+DDDP+RGNGEVIQATKAEI+PIKDE   SK LKE
Sbjct: 181 EENGASHTKKKRKRDAVDGASTEKTRDDDPSRGNGEVIQATKAEIEPIKDEAIASKPLKE 240

Query: 241 ---KKIKWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEMLEQKIDSS 300
               KIKWKKLITSILKS+PDGVLK+SKLRKLTLKSI ESGVT DETKL+ MLE KI+SS
Sbjct: 241 DLKMKIKWKKLITSILKSNPDGVLKLSKLRKLTLKSIRESGVTEDETKLIGMLELKINSS 300

Query: 301 SKFAVEKKYVRLAAKA 311
           SKFAVEKKYVRLAAKA
Sbjct: 301 SKFAVEKKYVRLAAKA 316

[Close]
BLAST of Carg18642 vs. NCBI nr
Match: XP_004141064.1 (PREDICTED: UBP1-associated proteins 1C [Cucumis sativus] >KGN60520.1 hypothetical protein Csa_2G000290 [Cucumis sativus])

HSP 1 Score: 502.3 bits (1292), Expect = 1.2e-138
Identity = 264/316 (83.54%), Postives = 280/316 (88.61%), Query Frame = 0 

Query: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60
           MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60

Query: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120
           GQGAA++VTTPKSNKDSKQQPDFDILVGLS RPPWFCSLCNTKATSKQTLLLHAEGKKHK
Sbjct: 61  GQGAAMSVTTPKSNKDSKQQPDFDILVGLSERPPWFCSLCNTKATSKQTLLLHAEGKKHK 120

Query: 121 GKARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLE 180
            KARGFHAA KQSNQTE+ V ++  A   TPK EV  NG VGAEK +DQL+A+SELG  E
Sbjct: 121 AKARGFHAAKKQSNQTEETVPDQKLAAVGTPKCEVAVNGRVGAEKLQDQLEAKSELGKFE 180

Query: 181 SENGTSHTKKKRK---LDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKE 240
            ENG SHTKKKRK   +D  STEKTKDDDPNRGNGEVIQAT+AEI+PIKDE   SK LKE
Sbjct: 181 EENGASHTKKKRKRDAVDGASTEKTKDDDPNRGNGEVIQATEAEIEPIKDEARASKPLKE 240

Query: 241 ---KKIKWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEMLEQKIDSS 300
               KIKWKKLITSILKS+PDGVLK+SKLRKLTLKSI ESGVT DETKL+ ML+QKI+SS
Sbjct: 241 DLKMKIKWKKLITSILKSNPDGVLKLSKLRKLTLKSIRESGVTEDETKLIGMLDQKINSS 300

Query: 301 SKFAVEKKYVRLAAKA 311
           SKFAVEKKYVRL AKA
Sbjct: 301 SKFAVEKKYVRLTAKA 316

[Close]
BLAST of Carg18642 vs. TAIR10
Match: AT2G19385.1 (zinc ion binding)

HSP 1 Score: 253.4 bits (646), Expect = 1.7e-67
Identity = 152/309 (49.19%), Postives = 193/309 (62.46%), Query Frame = 0 

Query: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60
           MVWFQCEDCG++LKKPK+P+HF+ C A KLSCIDCG+ FG+++VQGH QCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGESLKKPKVPSHFKMCRANKLSCIDCGEMFGRDTVQGHNQCITEAEKYGPK 60

Query: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120
           GQ  + N T  K    SKQ+PDFDI VGLSNR PWFCSLCNTKATS+QTLL HA+GKKH+
Sbjct: 61  GQSKSANGTPAKPKDISKQEPDFDINVGLSNRYPWFCSLCNTKATSQQTLLAHADGKKHR 120

Query: 121 GKARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLE 180
           GKA+ FHA  +Q   T   + N         KD      +V +E+ K  L A S +    
Sbjct: 121 GKAKAFHARQQQEQST--TLDN---------KDGSENASNVDSEQKKVDLPASSGVA--- 180

Query: 181 SENGTSHTKKKRKLDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKEKKI 240
             NG SH +KKRKL+  + ++T + +  +G         +++K  K      K   EKKI
Sbjct: 181 --NGESHPEKKRKLE--TLDETSEGEEAKG---------SDLKKAK------KQDHEKKI 240

Query: 241 KWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEMLEQKIDSSSKFAVE 300
            WKKLITS LKS                 SI +SG   D+++L   LE K++ SS+F V+
Sbjct: 241 NWKKLITSALKSXXXXXXXXXXXXXXXXXSIVDSG--RDKSELKAELELKVNLSSRFTVD 274

Query: 301 KKYVRLAAK 310
            KYV+L AK
Sbjct: 301 GKYVKLVAK 274

[Close]
BLAST of Carg18642 vs. TAIR10
Match: AT2G19380.1 (RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-34
Identity = 101/284 (35.56%), Postives = 126/284 (44.37%), Query Frame = 0 

Query: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGP- 60
           MVWFQC+DCG+NLKKP+LP H   C+ATK SCIDCG  FGQ SV  H QCITEAEKYGP 
Sbjct: 1   MVWFQCDDCGENLKKPRLPRHMSMCTATKFSCIDCGNMFGQVSVHYHNQCITEAEKYGPM 60

Query: 61  -----------------------------------------------KGQGAAINVTTPK 120
                                                          K Q  A  V    
Sbjct: 61  VRSNGESSKQKHDFDINAELFNSQWFCSLCNATMTCEQDYFAHVYGKKHQEKANEVADMD 120

Query: 121 SNKDSK-----------QQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHKG 180
            +K              QQPD DI VGLSN  PWFCSLC+  ATS+QTLL HA GKKH+ 
Sbjct: 121 YSKQQSEHPAVDKNNLTQQPDLDIYVGLSNDYPWFCSLCDINATSEQTLLAHANGKKHRV 180

Query: 181 KARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEK------SKDQLKAESE 213
           K   F A  ++   T+ +  +K    ++  K ++  + +VG         S   +KA  +
Sbjct: 181 KVERFDAEQQKRQSTQHSTVDK----KDYSKQQIEVDINVGLSNCYPWFCSLCNVKATCQ 240

[Close]
BLAST of Carg18642 vs. Swiss-Prot
Match: sp|O64571|UBA1C_ARATH (UBP1-associated proteins 1C OS=Arabidopsis thaliana OX=3702 GN=UBA1C PE=3 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 4.6e-33
Identity = 101/284 (35.56%), Postives = 126/284 (44.37%), Query Frame = 0 

Query: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGP- 60
           MVWFQC+DCG+NLKKP+LP H   C+ATK SCIDCG  FGQ SV  H QCITEAEKYGP 
Sbjct: 1   MVWFQCDDCGENLKKPRLPRHMSMCTATKFSCIDCGNMFGQVSVHYHNQCITEAEKYGPM 60

Query: 61  -----------------------------------------------KGQGAAINVTTPK 120
                                                          K Q  A  V    
Sbjct: 61  VRSNGESSKQKHDFDINAELFNSQWFCSLCNATMTCEQDYFAHVYGKKHQEKANEVADMD 120

Query: 121 SNKDSK-----------QQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHKG 180
            +K              QQPD DI VGLSN  PWFCSLC+  ATS+QTLL HA GKKH+ 
Sbjct: 121 YSKQQSEHPAVDKNNLTQQPDLDIYVGLSNDYPWFCSLCDINATSEQTLLAHANGKKHRV 180

Query: 181 KARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEK------SKDQLKAESE 213
           K   F A  ++   T+ +  +K    ++  K ++  + +VG         S   +KA  +
Sbjct: 181 KVERFDAEQQKRQSTQHSTVDK----KDYSKQQIEVDINVGLSNCYPWFCSLCNVKATCQ 240

[Close]
BLAST of Carg18642 vs. Swiss-Prot
Match: sp|Q08288|LYAR_MOUSE (Cell growth-regulating nucleolar protein OS=Mus musculus OX=10090 GN=Lyar PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 9.3e-10
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 0 

Query: 1  MVWFQCEDCGDNLKKPKLPNHFRTC-SATKLSCIDCGQTFGQESVQGHTQCITEAEKYGP 60
          MV+F C  CG+++KK ++  H   C +   LSCIDCG+ F  +  + H +CI+E +KYG 
Sbjct: 1  MVFFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSHVKCISEGQKYGG 60

Query: 61 KGQGAAINVTTPKSNK-DSKQQ 81
          KG  A       K++K D+KQQ
Sbjct: 61 KGYEA-------KTHKGDAKQQ 75

[Close]
BLAST of Carg18642 vs. Swiss-Prot
Match: sp|O94311|YH56_SCHPO (UPF0743 protein C215.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC215.06c PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-09
Identity = 34/94 (36.17%), Postives = 44/94 (46.81%), Query Frame = 0 

Query: 1  MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKY--- 60
          MV F CE C D +KKPKL  H   C     +CIDC  TF +   + HT C+TEA++Y   
Sbjct: 1  MVSFCCEVCQDIIKKPKLDQHRSRCHGAYFTCIDCNTTFERTDYRNHTSCMTEAQRYQKG 60

Query: 61 ----------GPKGQGAAINVTTPKSNKDSKQQP 82
                      K  G A+N      N D++  P
Sbjct: 61 LYRPTKKELKKAKMNGNAVNSKELSPNTDNQNTP 94

[Close]
BLAST of Carg18642 vs. Swiss-Prot
Match: sp|Q9NX58|LYAR_HUMAN (Cell growth-regulating nucleolar protein OS=Homo sapiens OX=9606 GN=LYAR PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-09
Identity = 36/95 (37.89%), Postives = 52/95 (54.74%), Query Frame = 0 

Query: 1  MVWFQCEDCGDNLKKPKLPNHFRTC-SATKLSCIDCGQTFGQESVQGHTQCITEAEKYGP 60
          MV+F C  CG+++KK ++  H   C +   LSCIDCG+ F  +  + H +CI+E +KYG 
Sbjct: 1  MVFFTCNACGESVKKIQVEKHVSVCRNCECLSCIDCGKDFWGDDYKNHVKCISEDQKYGG 60

Query: 61 KGQGAAINVTTPKSNK-DSKQQPDFDILVGLSNRP 94
          KG          K++K D KQQ     +  L  RP
Sbjct: 61 KGYEG-------KTHKGDIKQQAWIQKISELIKRP 88

[Close]
BLAST of Carg18642 vs. Swiss-Prot
Match: sp|Q6AYK5|LYAR_RAT (Cell growth-regulating nucleolar protein OS=Rattus norvegicus OX=10116 GN=Lyar PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.6e-09
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 0 

Query: 1  MVWFQCEDCGDNLKKPKLPNHFRTC-SATKLSCIDCGQTFGQESVQGHTQCITEAEKYGP 60
          MV+F C  CG+++KK ++  H   C +   LSCIDCG+ F  +  + H +CI+E +KYG 
Sbjct: 1  MVFFTCNACGESVKKIQVEKHVSICRNCECLSCIDCGKDFWGDDYKNHVKCISEDQKYGG 60

Query: 61 KGQGAAINVTTPKSNK-DSKQQ 81
          KG  A       K++K D KQQ
Sbjct: 61 KGYEA-------KTHKGDVKQQ 75

[Close]
BLAST of Carg18642 vs. TrEMBL
Match: tr|A0A1S3CAI8|A0A1S3CAI8_CUCME (UBP1-associated proteins 1C OS=Cucumis melo OX=3656 GN=LOC103498668 PE=4 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 1.3e-141
Identity = 267/316 (84.49%), Postives = 284/316 (89.87%), Query Frame = 0 

Query: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60
           MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60

Query: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120
           GQGAA++VTTPKSNKDSKQQPDFDILVGLS RPPWFCSLCNTKATSKQTLLLHAEGKKHK
Sbjct: 61  GQGAAMSVTTPKSNKDSKQQPDFDILVGLSERPPWFCSLCNTKATSKQTLLLHAEGKKHK 120

Query: 121 GKARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLE 180
            KARGFHAA KQSNQTE+ V ++ P   +TPK E  ENGHVGAEKS+DQL+A+SELG LE
Sbjct: 121 AKARGFHAAKKQSNQTEETVPDQKPTAVDTPKCEGAENGHVGAEKSQDQLEAKSELGKLE 180

Query: 181 SENGTSHTKKKRK---LDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKE 240
            ENG SHTKKKRK   +D  STEKT+DDDP+RGNGEVIQATKAEI+PIKDE   SK LKE
Sbjct: 181 EENGASHTKKKRKRDAVDGASTEKTRDDDPSRGNGEVIQATKAEIEPIKDEAIASKPLKE 240

Query: 241 ---KKIKWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEMLEQKIDSS 300
               KIKWKKLITSILKS+PDGVLK+SKLRKLTLKSI ESGVT DETKL+ MLE KI+SS
Sbjct: 241 DLKMKIKWKKLITSILKSNPDGVLKLSKLRKLTLKSIRESGVTEDETKLIGMLELKINSS 300

Query: 301 SKFAVEKKYVRLAAKA 311
           SKFAVEKKYVRLAAKA
Sbjct: 301 SKFAVEKKYVRLAAKA 316

[Close]
BLAST of Carg18642 vs. TrEMBL
Match: tr|A0A0A0LET8|A0A0A0LET8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000290 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 7.9e-139
Identity = 264/316 (83.54%), Postives = 280/316 (88.61%), Query Frame = 0 

Query: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60
           MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60

Query: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120
           GQGAA++VTTPKSNKDSKQQPDFDILVGLS RPPWFCSLCNTKATSKQTLLLHAEGKKHK
Sbjct: 61  GQGAAMSVTTPKSNKDSKQQPDFDILVGLSERPPWFCSLCNTKATSKQTLLLHAEGKKHK 120

Query: 121 GKARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLE 180
            KARGFHAA KQSNQTE+ V ++  A   TPK EV  NG VGAEK +DQL+A+SELG  E
Sbjct: 121 AKARGFHAAKKQSNQTEETVPDQKLAAVGTPKCEVAVNGRVGAEKLQDQLEAKSELGKFE 180

Query: 181 SENGTSHTKKKRK---LDDGSTEKTKDDDPNRGNGEVIQATKAEIKPIKDEITVSKSLKE 240
            ENG SHTKKKRK   +D  STEKTKDDDPNRGNGEVIQAT+AEI+PIKDE   SK LKE
Sbjct: 181 EENGASHTKKKRKRDAVDGASTEKTKDDDPNRGNGEVIQATEAEIEPIKDEARASKPLKE 240

Query: 241 ---KKIKWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEMLEQKIDSS 300
               KIKWKKLITSILKS+PDGVLK+SKLRKLTLKSI ESGVT DETKL+ ML+QKI+SS
Sbjct: 241 DLKMKIKWKKLITSILKSNPDGVLKLSKLRKLTLKSIRESGVTEDETKLIGMLDQKINSS 300

Query: 301 SKFAVEKKYVRLAAKA 311
           SKFAVEKKYVRL AKA
Sbjct: 301 SKFAVEKKYVRLTAKA 316

[Close]
BLAST of Carg18642 vs. TrEMBL
Match: tr|A0A2I4GLI1|A0A2I4GLI1_9ROSI (UBP1-associated proteins 1C-like OS=Juglans regia OX=51240 GN=LOC109008925 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 4.5e-102
Identity = 207/322 (64.29%), Postives = 240/322 (74.53%), Query Frame = 0 

Query: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60
           MVWFQCEDCG+NLKKPKLPNHFR CSA+KLSCIDCGQTFGQ+SVQGHTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGENLKKPKLPNHFRICSASKLSCIDCGQTFGQQSVQGHTQCITEAEKYGPK 60

Query: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120
           GQG A N  T K NK+SKQQPD DI VGLS RPPWFCSLCN  ATSKQ LLLHAEGKKH+
Sbjct: 61  GQGNASNSLTAKPNKNSKQQPDIDINVGLSERPPWFCSLCNASATSKQALLLHAEGKKHR 120

Query: 121 GKARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLE 180
            KAR FHAA     QTE++  +      +T KDE+V NGH    K  D  KA+    NLE
Sbjct: 121 AKARAFHAAKDPPKQTEESTPDAKLQTGDTQKDEMVANGHAKEPKLPDPPKADIVHNNLE 180

Query: 181 SENGTSHTKKKRKLD----DGSTEKTKDD-DPNRGNGEVIQATKAEI----KPIKD-EIT 240
           S+ G + +KKKRKL+    DGS +KTKDD   + GNGEVI   K E      P+KD ++ 
Sbjct: 181 SDKGAAPSKKKRKLEGSAKDGSRKKTKDDTSSDLGNGEVIHGEKEEAAETKSPLKDGKLA 240

Query: 241 VSKSLKE---KKIKWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEML 300
            S S KE   +KIKW+KLITS LKS+PDG LKM KLRKL LK++ ESG+T DE+KL++ML
Sbjct: 241 ESSSAKEDTKEKIKWRKLITSALKSNPDGFLKMRKLRKLVLKALRESGITEDESKLIDML 300

Query: 301 EQKIDSSSKFAVEKKYVRLAAK 310
           E KI+SSS+F +EKKYV L A+
Sbjct: 301 EHKINSSSRFTIEKKYVHLVAR 322

[Close]
BLAST of Carg18642 vs. TrEMBL
Match: tr|A0A2N9HF31|A0A2N9HF31_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38430 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.1e-100
Identity = 204/322 (63.35%), Postives = 237/322 (73.60%), Query Frame = 0 

Query: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60
           MVWFQCEDCG+NLKKPKLPNHFR CSA+KLSCIDCGQTFGQ+SVQ HTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGENLKKPKLPNHFRICSASKLSCIDCGQTFGQQSVQSHTQCITEAEKYGPK 60

Query: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120
           GQG A N ++ K +KDSKQQ DFDI VGLS RPPW CSLCNT  TSKQTLLLHAEGKKH+
Sbjct: 61  GQGKASNGSSAKPSKDSKQQVDFDITVGLSERPPWVCSLCNTNTTSKQTLLLHAEGKKHR 120

Query: 121 GKARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLE 180
            KAR  HA+ +     E++        E+T K E+++N H      +D  K++++   LE
Sbjct: 121 AKARAIHASKQPPKLAEESAPETKIPTEDTQKAELIDNEHAKKPNLQDPPKSDTDHNKLE 180

Query: 181 SENGTSHTKKKRKLD----DGSTEKTKDDDP-NRGNGEVIQATKAEIKPIK-----DEIT 240
           ++ GTS +KKKRKLD    DGS +KTKDD P + GNGEVI   KAE    +     D + 
Sbjct: 181 ADKGTSPSKKKRKLDASAKDGSRKKTKDDTPGDLGNGEVIHGEKAEADETESQLKNDTLA 240

Query: 241 VSKSLKE---KKIKWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEML 300
            S S KE    KIKWKKLITS LKS+PDGVLKM KLRKL LK +HESG+T DETKL +ML
Sbjct: 241 ESNSTKEDKKTKIKWKKLITSALKSNPDGVLKMRKLRKLVLKDLHESGITEDETKLSDML 300

Query: 301 EQKIDSSSKFAVEKKYVRLAAK 310
           E KI+SSS+F VE KYVRL AK
Sbjct: 301 EHKINSSSRFTVENKYVRLVAK 322

[Close]
BLAST of Carg18642 vs. TrEMBL
Match: tr|A0A2P4NAZ0|A0A2P4NAZ0_QUESU (Ubp1-associated proteins 1c OS=Quercus suber OX=58331 GN=CFP56_57398 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 3.9e-98
Identity = 202/322 (62.73%), Postives = 235/322 (72.98%), Query Frame = 0 

Query: 1   MVWFQCEDCGDNLKKPKLPNHFRTCSATKLSCIDCGQTFGQESVQGHTQCITEAEKYGPK 60
           MVWFQCEDCG+NLKKPKLPNHFR CSATKLSCIDCGQTFGQ+SVQ HTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGENLKKPKLPNHFRICSATKLSCIDCGQTFGQQSVQSHTQCITEAEKYGPK 60

Query: 61  GQGAAINVTTPKSNKDSKQQPDFDILVGLSNRPPWFCSLCNTKATSKQTLLLHAEGKKHK 120
           GQ    N ++ K +KDSKQQ DFDI VGLS RPPWFCSLCNT  TSKQTLLLHAEGKKHK
Sbjct: 61  GQVKVSNGSSTKPSKDSKQQVDFDINVGLSERPPWFCSLCNTSTTSKQTLLLHAEGKKHK 120

Query: 121 GKARGFHAANKQSNQTEKAVSNKMPAVEETPKDEVVENGHVGAEKSKDQLKAESELGNLE 180
            KAR FHAA +   Q E++        E+T KDE+++N       S++  K+++E    E
Sbjct: 121 AKARAFHAAKQPPKQAEESAPETKLPTEDTQKDELLDNKCAKEPNSQNPPKSDTEHNKSE 180

Query: 181 SENGTSHTKKKRKLD----DGSTEKTKDDDP-NRGNGEVIQATKAEIKPI-----KDEIT 240
           ++ GTS  KKKRKLD    D S +KTKDD P + G+GEVI + KAE   +      D + 
Sbjct: 181 ADKGTSPLKKKRKLDASAKDDSRKKTKDDTPGDLGDGEVIHSEKAEADEMNSQLKNDTLA 240

Query: 241 VSKSLKE---KKIKWKKLITSILKSSPDGVLKMSKLRKLTLKSIHESGVTGDETKLVEML 300
              S +E   +KIKWKKLITS LKS+PDGVLKM KLRKL LK++HE G T DETKL + L
Sbjct: 241 EPSSTREDTKRKIKWKKLITSALKSNPDGVLKMRKLRKLVLKALHEPGTTEDETKLSDTL 300

Query: 301 EQKIDSSSKFAVEKKYVRLAAK 310
           E KI+SSS+F VE KYVRL AK
Sbjct: 301 EHKINSSSRFTVENKYVRLVAK 322

The following BLAST results are available for this feature:
BLAST of Carg18642 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937737.14.6e-16798.71UBP1-associated proteins 1C [Cucurbita moschata][more]
XP_023538491.12.3e-16698.06UBP1-associated proteins 1C [Cucurbita pepo subsp. pepo][more]
XP_022965441.12.2e-16195.48UBP1-associated proteins 1C [Cucurbita maxima][more]
XP_008459586.12.0e-14184.49PREDICTED: UBP1-associated proteins 1C [Cucumis melo][more]
XP_004141064.11.2e-13883.54PREDICTED: UBP1-associated proteins 1C [Cucumis sativus] >KGN60520.1 hypothetica... [more]
BLAST of Carg18642 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G19385.11.7e-6749.19zinc ion binding[more]
AT2G19380.12.5e-3435.56RNA recognition motif (RRM)-containing protein[more]
BLAST of Carg18642 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O64571|UBA1C_ARATH4.6e-3335.56UBP1-associated proteins 1C OS=Arabidopsis thaliana OX=3702 GN=UBA1C PE=3 SV=2[more]
sp|Q08288|LYAR_MOUSE9.3e-1041.46Cell growth-regulating nucleolar protein OS=Mus musculus OX=10090 GN=Lyar PE=1 S... [more]
sp|O94311|YH56_SCHPO1.6e-0936.17UPF0743 protein C215.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ... [more]
sp|Q9NX58|LYAR_HUMAN2.1e-0937.89Cell growth-regulating nucleolar protein OS=Homo sapiens OX=9606 GN=LYAR PE=1 SV... [more]
sp|Q6AYK5|LYAR_RAT4.6e-0941.46Cell growth-regulating nucleolar protein OS=Rattus norvegicus OX=10116 GN=Lyar P... [more]
BLAST of Carg18642 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CAI8|A0A1S3CAI8_CUCME1.3e-14184.49UBP1-associated proteins 1C OS=Cucumis melo OX=3656 GN=LOC103498668 PE=4 SV=1[more]
tr|A0A0A0LET8|A0A0A0LET8_CUCSA7.9e-13983.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000290 PE=4 SV=1[more]
tr|A0A2I4GLI1|A0A2I4GLI1_9ROSI4.5e-10264.29UBP1-associated proteins 1C-like OS=Juglans regia OX=51240 GN=LOC109008925 PE=4 ... [more]
tr|A0A2N9HF31|A0A2N9HF31_FAGSY1.1e-10063.35Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38430 PE=4 SV=1[more]
tr|A0A2P4NAZ0|A0A2P4NAZ0_QUESU3.9e-9862.73Ubp1-associated proteins 1c OS=Quercus suber OX=58331 GN=CFP56_57398 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR014898Znf_C2H2_LYAR
IPR003604Matrin/U1-like-C_Znf_C2H2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18642-RACarg18642-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 92..126
e-value: 9.8E-4
score: 28.4
IPR014898Zinc finger, C2H2, LYAR-typePFAMPF08790zf-LYARcoord: 30..57
e-value: 7.0E-15
score: 54.5
NoneNo IPR availableGENE3DG3DSA:3.30.160.60coord: 89..130
e-value: 4.1E-8
score: 34.6
NoneNo IPR availablePFAMPF12874zf-metcoord: 95..119
e-value: 1.7E-5
score: 25.0
NoneNo IPR availableGENE3DG3DSA:2.20.28.110coord: 1..50
e-value: 2.1E-16
score: 61.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..216
NoneNo IPR availablePANTHERPTHR13100FAMILY NOT NAMEDcoord: 1..307
NoneNo IPR availablePROSITEPS51804ZF_C2HC_LYARcoord: 1..26
score: 11.964
NoneNo IPR availablePROSITEPS51804ZF_C2HC_LYARcoord: 27..51
score: 11.573
IPR036236Zinc finger C2H2 superfamilySUPERFAMILYSSF57667beta-beta-alpha zinc fingerscoord: 92..130
IPR036236Zinc finger C2H2 superfamilySUPERFAMILYSSF57667beta-beta-alpha zinc fingerscoord: 30..58
IPR036236Zinc finger C2H2 superfamilySUPERFAMILYSSF57667beta-beta-alpha zinc fingerscoord: 1..26

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18642Cla016846Watermelon (97103) v1carwmB0899
Carg18642Csa2G000290Cucumber (Chinese Long) v2carcuB0910
Carg18642MELO3C004639Melon (DHL92) v3.5.1carmeB0884
Carg18642ClCG11G001610Watermelon (Charleston Gray)carwcgB0869
Carg18642CSPI02G00290Wild cucumber (PI 183967)carcpiB0930
Carg18642Cucsa.117190Cucumber (Gy14) v1carcgyB1015
Carg18642CmaCh12G013190Cucurbita maxima (Rimu)carcmaB1236
Carg18642CmoCh12G013500Cucurbita moschata (Rifu)carcmoB1207
Carg18642Lsi11G001730Bottle gourd (USVL1VR-Ls)carlsiB811
Carg18642Cp4.1LG07g10610Cucurbita pepo (Zucchini)carcpeB1248
Carg18642CsGy2G000280Cucumber (Gy14) v2carcgybB0883
Carg18642MELO3C004639.2Melon (DHL92) v3.6.1carmedB0892
Carg18642CsaV3_2G001300Cucumber (Chinese Long) v3carcucB0933
Carg18642Cla97C11G207980Watermelon (97103) v2carwmbB0932
Carg18642Bhi06G001399Wax gourdcarwgoB1038
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg18642Silver-seed gourdcarcarB108
Carg18642Silver-seed gourdcarcarB527
Carg18642Silver-seed gourdcarcarB528
Carg18642Silver-seed gourdcarcarB526
Carg18642Cucumber (Gy14) v2carcgybB0881
Carg18642Cucumber (Gy14) v2carcgybB0882
Carg18642Cucumber (Gy14) v1carcgyB1014
Carg18642Cucumber (Gy14) v1carcgyB1016
Carg18642Cucurbita maxima (Rimu)carcmaB1234
Carg18642Cucurbita maxima (Rimu)carcmaB1235
Carg18642Cucurbita maxima (Rimu)carcmaB1237
Carg18642Cucurbita moschata (Rifu)carcmoB1205
Carg18642Cucurbita moschata (Rifu)carcmoB1206
Carg18642Cucurbita moschata (Rifu)carcmoB1208
Carg18642Cucurbita pepo (Zucchini)carcpeB1244
Carg18642Cucurbita pepo (Zucchini)carcpeB1245
Carg18642Cucurbita pepo (Zucchini)carcpeB1246
Carg18642Cucurbita pepo (Zucchini)carcpeB1247
Carg18642Wild cucumber (PI 183967)carcpiB0929
Carg18642Wild cucumber (PI 183967)carcpiB0931
Carg18642Cucumber (Chinese Long) v2carcuB0909
Carg18642Cucumber (Chinese Long) v2carcuB0911
Carg18642Cucumber (Chinese Long) v3carcucB0932
Carg18642Cucumber (Chinese Long) v3carcucB0934
Carg18642Bottle gourd (USVL1VR-Ls)carlsiB812
Carg18642Bottle gourd (USVL1VR-Ls)carlsiB817
Carg18642Melon (DHL92) v3.5.1carmeB0882
Carg18642Melon (DHL92) v3.5.1carmeB0883
Carg18642Melon (DHL92) v3.5.1carmeB0885
Carg18642Melon (DHL92) v3.6.1carmedB0890
Carg18642Melon (DHL92) v3.6.1carmedB0891
Carg18642Melon (DHL92) v3.6.1carmedB0893
Carg18642Watermelon (Charleston Gray)carwcgB0870
Carg18642Watermelon (Charleston Gray)carwcgB0875
Carg18642Watermelon (97103) v1carwmB0897
Carg18642Watermelon (97103) v1carwmB0898
Carg18642Watermelon (97103) v1carwmB0900
Carg18642Watermelon (97103) v2carwmbB0933
Carg18642Watermelon (97103) v2carwmbB0938
Carg18642Watermelon (97103) v2carwmbB0940
Carg18642Wax gourdcarwgoB1041
Carg18642Wax gourdcarwgoB1043