Carg18628 (gene) Silver-seed gourd

Overview
NameCarg18628
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionbasic helix-loop-helix (bHLH) DNA-binding family protein
LocationCucurbita_argyrosperma_scaffold_147 : 264663 .. 265437 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTCTTAAAAACCCTCCTCCCCCGACTTCGTTGTCGTCGTTGTCGTCCACGAACTTCCTTCGTCGTCGACCCGGGTCAGCTCAATTGCTTCACATGATAGCGGAGCGGAGAAGAAGAGAGAAGCTTAATGGAAGCTTCCAAGCTTTGAGATCCCTTCTTCCCCCCGGAACTAAGGTTAAATATAATCAATTTTGCATGCATTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGTTAATGAATTTACGTACGTAGAAAGATAAATTATCGGTACTAGCAACCACAAGAGAATACTTAACCAAATTGAGAGAGCAAGTTTCAGAGCTCAGCCATAAAAACCAGATGCTTCTAGAAGCTCAGTCTCAAGGGGAAGAAACTGCCAACTCATTACTTAATGAACGCTTCACCGTTAGGGTTTCCCACGCGCCGCCGTCTATTAATGGAACGGAAATTATAGACTTGGAAATTACGGTTAGAGGCGAAGGATCGTTAATGGCGGATATTGTAATTCGCGTGTTGGAATTCATGAAGAATGTTGTGAATGTGGGGGTAATTTTGTCATTTCACGGCATTGAACAGATTTCTCCTTCTTCTCTTGTTAGCCGCCTCCGCTTCAGATTCAGCCTTCAGGTTTGCTTCCTCTCTCTCATTTTTAGGGTTTTGTTTAAATTATTTTTATTTATTTATTTATTTATTTTGTCTGTGAATAGGACGGCGAATGGGACGAGTCGGGTTTCCTGGAAGCAGTGA

mRNA sequence

ATGGCTGTTCTTAAAAACCCTCCTCCCCCGACTTCGTTGTCGTCGTTGTCGTCCACGAACTTCCTTCGTCGTCGACCCGGGTCAGCTCAATTGCTTCACATGATAGCGGAGCGGAGAAGAAGAGAGAAGCTTAATGGAAGCTTCCAAGCTTTGAGATCCCTTCTTCCCCCCGGAACTAAGAAAGATAAATTATCGGTACTAGCAACCACAAGAGAATACTTAACCAAATTGAGAGAGCAAGTTTCAGAGCTCAGCCATAAAAACCAGATGCTTCTAGAAGCTCAGTCTCAAGGGGAAGAAACTGCCAACTCATTACTTAATGAACGCTTCACCGTTAGGGTTTCCCACGCGCCGCCGTCTATTAATGGAACGGAAATTATAGACTTGGAAATTACGGTTAGAGGCGAAGGATCGTTAATGGCGGATATTGTAATTCGCGTGTTGGAATTCATGAAGAATGTTGTGAATGTGGGGGTAATTTTGTCATTTCACGGCATTGAACAGATTTCTCCTTCTTCTCTTGTTAGCCGCCTCCGCTTCAGATTCAGCCTTCAGGTTTGCTTCCTCTCTCTCATTTTTAGGGTTTTGTTTAAATTATTTTTATTTATTTATTTATTTATTTTGTCTGTGAATAGGACGGCGAATGGGACGAGTCGGGTTTCCTGGAAGCAGTGA

Coding sequence (CDS)

ATGGCTGTTCTTAAAAACCCTCCTCCCCCGACTTCGTTGTCGTCGTTGTCGTCCACGAACTTCCTTCGTCGTCGACCCGGGTCAGCTCAATTGCTTCACATGATAGCGGAGCGGAGAAGAAGAGAGAAGCTTAATGGAAGCTTCCAAGCTTTGAGATCCCTTCTTCCCCCCGGAACTAAGAAAGATAAATTATCGGTACTAGCAACCACAAGAGAATACTTAACCAAATTGAGAGAGCAAGTTTCAGAGCTCAGCCATAAAAACCAGATGCTTCTAGAAGCTCAGTCTCAAGGGGAAGAAACTGCCAACTCATTACTTAATGAACGCTTCACCGTTAGGGTTTCCCACGCGCCGCCGTCTATTAATGGAACGGAAATTATAGACTTGGAAATTACGGTTAGAGGCGAAGGATCGTTAATGGCGGATATTGTAATTCGCGTGTTGGAATTCATGAAGAATGTTGTGAATGTGGGGGTAATTTTGTCATTTCACGGCATTGAACAGATTTCTCCTTCTTCTCTTGTTAGCCGCCTCCGCTTCAGATTCAGCCTTCAGGTTTGCTTCCTCTCTCTCATTTTTAGGGTTTTGTTTAAATTATTTTTATTTATTTATTTATTTATTTTGTCTGTGAATAGGACGGCGAATGGGACGAGTCGGGTTTCCTGGAAGCAGTGA

Protein sequence

MAVLKNPPPPTSLSSLSSTNFLRRRPGSAQLLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSELSHKNQMLLEAQSQGEETANSLLNERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADIVIRVLEFMKNVVNVGVILSFHGIEQISPSSLVSRLRFRFSLQVCFLSLIFRVLFKLFLFIYLFILSVNRTANGTSRVSWKQ
Homology
[Close]
BLAST of Carg18628 vs. NCBI nr
Match: XP_022965417.1 (uncharacterized protein LOC111465335 [Cucurbita maxima])

HSP 1 Score: 287.3 bits (734), Expect = 4.3e-74
Identity = 158/169 (93.49%), Postives = 160/169 (94.67%), Query Frame = 0 

Query: 21  FLRRRPGSAQLLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQ 80
           FLRRRPGSAQLLHMIAERRRREKLNGSFQALRSLLPPGTKKDK SVLATTREYLTKLREQ
Sbjct: 187 FLRRRPGSAQLLHMIAERRRREKLNGSFQALRSLLPPGTKKDKSSVLATTREYLTKLREQ 246

Query: 81  VSELSHKNQMLLEAQSQGEETANSLLNERFTVRVSHAP----PSINGTEIIDLEITVRGE 140
           VSELSHKNQ LLEAQSQGEETANSLL ERFTVRVSHAP    PSING EIIDLEITVRG 
Sbjct: 247 VSELSHKNQRLLEAQSQGEETANSLLYERFTVRVSHAPPGFTPSINGMEIIDLEITVRGG 306

Query: 141 GSLMADIVIRVLEFMKNVVNVGVILSFHGIEQISPSSLVSRLRFRFSLQ 186
           GSLMADIVIRVLEF+KNVVNVGVILSFHGIEQISPSSL+SRLRFRFSLQ
Sbjct: 307 GSLMADIVIRVLEFLKNVVNVGVILSFHGIEQISPSSLISRLRFRFSLQ 355

[Close]
BLAST of Carg18628 vs. NCBI nr
Match: XP_022937889.1 (uncharacterized protein LOC111444143 [Cucurbita moschata])

HSP 1 Score: 255.4 bits (651), Expect = 1.8e-64
Identity = 137/144 (95.14%), Postives = 139/144 (96.53%), Query Frame = 0 

Query: 42  EKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSELSHKNQMLLEAQSQGEET 101
           EKLNGSFQALRSLL PGTKKDKLSVLATTREYLTKLREQVSELSHKNQMLLEAQSQGEET
Sbjct: 197 EKLNGSFQALRSLLHPGTKKDKLSVLATTREYLTKLREQVSELSHKNQMLLEAQSQGEET 256

Query: 102 ANSLLNERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADIVIRVLEFMKNVVNVGVIL 161
           A S +NERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADIVIRVLEF+KN VNVGVIL
Sbjct: 257 AKSFVNERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADIVIRVLEFLKNAVNVGVIL 316

Query: 162 SFHGIEQISPSSLVSRLRFRFSLQ 186
           SFH IEQISPSSLVSRLRFRFSLQ
Sbjct: 317 SFHSIEQISPSSLVSRLRFRFSLQ 340

[Close]
BLAST of Carg18628 vs. NCBI nr
Match: XP_023537999.1 (uncharacterized protein LOC111798884 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.6 bits (649), Expect = 3.1e-64
Identity = 134/143 (93.71%), Postives = 140/143 (97.90%), Query Frame = 0 

Query: 43  KLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSELSHKNQMLLEAQSQGEETA 102
           KLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSELSHKNQ LLEAQSQGEETA
Sbjct: 195 KLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSELSHKNQKLLEAQSQGEETA 254

Query: 103 NSLLNERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADIVIRVLEFMKNVVNVGVILS 162
           NS +NERFTVRVSHAPPSINGTEIIDLEITVRG+GSLM DIVIRVLEF+KNVVNVGVILS
Sbjct: 255 NSFVNERFTVRVSHAPPSINGTEIIDLEITVRGQGSLMPDIVIRVLEFLKNVVNVGVILS 314

Query: 163 FHGIEQISPSSLVSRLRFRFSLQ 186
           FHGIEQ++PSSL+SRLRFRFSLQ
Sbjct: 315 FHGIEQLAPSSLLSRLRFRFSLQ 337

[Close]
BLAST of Carg18628 vs. NCBI nr
Match: XP_022154663.1 (putative transcription factor bHLH041 [Momordica charantia])

HSP 1 Score: 205.3 bits (521), Expect = 2.2e-49
Identity = 113/165 (68.48%), Postives = 135/165 (81.82%), Query Frame = 0 

Query: 25  RPGSAQLLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSEL 84
           RP SAQLLHMI+ERRRR+KLN SFQALRSLLPP TKKDK SVLATTREYLTKL+ QVSEL
Sbjct: 272 RPASAQLLHMISERRRRQKLNDSFQALRSLLPPPTKKDKASVLATTREYLTKLKAQVSEL 331

Query: 85  SHKNQMLLEAQSQGEE---TANSLLNERFTVRVSHAPPSINGTEIIDLEITVR-GEGSLM 144
           SHKN+MLLEAQ   ++   T +S +NERFTVRVSHAP +    +  DLEITVR GEG LM
Sbjct: 332 SHKNRMLLEAQPNNKQQAITTSSSVNERFTVRVSHAPAADEAEKFFDLEITVRSGEGLLM 391

Query: 145 ADIVIRVLEFMKNVVNVGVILSFHGIEQISPSSLVSRLRFRFSLQ 186
           A++ IRVL+F++N V+VG +LSF G + ++PSS +SRL FRF+LQ
Sbjct: 392 ANVAIRVLQFLRNAVDVGAVLSFRGDDTMAPSSSLSRLAFRFTLQ 436

[Close]
BLAST of Carg18628 vs. NCBI nr
Match: XP_008459381.1 (PREDICTED: putative transcription factor bHLH041 isoform X1 [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 2.7e-44
Identity = 112/171 (65.50%), Postives = 129/171 (75.44%), Query Frame = 0 

Query: 24  RRPGSAQLLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSE 83
           +RP SAQL+HMIAERRRREKLN SF ALRS+LPP TKKDK SVLATTREYLTKL+ QVSE
Sbjct: 279 KRPASAQLIHMIAERRRREKLNESFLALRSILPPQTKKDKASVLATTREYLTKLKAQVSE 338

Query: 84  LSHKNQMLLEAQS------QGEETANSLLNERFTVRVSHAPPSINGTE--IIDLEITVRG 143
           LSH+N +LL+AQ           T  S LNE FTV+VS+APPS   T+  +IDLEI VRG
Sbjct: 339 LSHRNHILLQAQDLHIATHHQSTTPTSSLNEPFTVKVSYAPPSPGSTDEIVIDLEIIVRG 398

Query: 144 E-GSLMADIVIRVLEFMKNVVNVGVILSFHGIEQISPSSLVSRLRFRFSLQ 186
           + G LM DI IRVL+F+K +VNV V+LSFH     SPS L +RL FRFSLQ
Sbjct: 399 DMGPLMTDIAIRVLQFLKTIVNVRVVLSFHANHTTSPSPL-TRLGFRFSLQ 448

[Close]
BLAST of Carg18628 vs. TAIR10
Match: AT5G56960.1 (basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 119.0 bits (297), Expect = 3.7e-27
Identity = 69/137 (50.36%), Postives = 96/137 (70.07%), Query Frame = 0 

Query: 26  PGSAQLLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSELS 85
           P + QL HMI+ER+RREKLN SFQALRSLLPPGTKKDK SVL+  RE L+ L+ ++S+L 
Sbjct: 283 PSATQLQHMISERKRREKLNESFQALRSLLPPGTKKDKASVLSIAREQLSSLQGEISKLL 342

Query: 86  HKNQMLLEAQSQGE-ETANSLL-NERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADI 145
            +N+  +EA+  GE E  N L   ERF VR+ H P S +    +DL + +RG+   + D+
Sbjct: 343 ERNRE-VEAKLAGEREIENDLRPEERFNVRIRHIPESTSRERTLDLRVVLRGDIIRVDDL 402

Query: 146 VIRVLEFMKNVVNVGVI 161
           +IR+LEF+K + NV ++
Sbjct: 403 MIRLLEFLKQINNVSLV 418

[Close]
BLAST of Carg18628 vs. TAIR10
Match: AT4G09820.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-08
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 0 

Query: 31  LLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSELSHKNQM 90
           L H++AERRRREKLN  F  LRS++P  TK DK+S+L  T  Y+  LR++V EL + +  
Sbjct: 362 LSHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHH- 421

Query: 91  LLEAQSQGEETANSLLNERFTVRV 115
             E Q +   T     +E   V +
Sbjct: 422 --EQQHKRTRTCKRKTSEEVEVSI 442

[Close]
BLAST of Carg18628 vs. TAIR10
Match: AT2G46510.1 (ABA-inducible BHLH-type transcription factor)

HSP 1 Score: 51.6 bits (122), Expect = 7.3e-07
Identity = 42/133 (31.58%), Postives = 72/133 (54.14%), Query Frame = 0 

Query: 24  RRPGSAQ---LLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQ 83
           R+P + +   L H+ AER+RREKLN  F ALRS++P  +K DK S+L     Y+ +L+E+
Sbjct: 384 RKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEK 443

Query: 84  VSELSHKNQMLLEAQSQGEETANSLLNERFTVRVSHAPPSINGTEIIDLEITVRGEGSLM 143
           V         ++E +  G + +   L+E  T+ V  +P      + ++ E+ VR    L 
Sbjct: 444 VK--------IMEDERVGTDKS---LSESNTITVEESPEV--DIQAMNEEVVVRVISPLD 503

Query: 144 ADIVIRVLEFMKN 154
           +    R+++ M+N
Sbjct: 504 SHPASRIIQAMRN 503

[Close]
BLAST of Carg18628 vs. TAIR10
Match: AT1G63650.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 51.2 bits (121), Expect = 9.5e-07
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 33  HMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSEL 85
           H ++E++RREKLN  F  LRS++P  +K DK+S+L  T EYL  L+++V EL
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQEL 457

[Close]
BLAST of Carg18628 vs. TAIR10
Match: AT2G41240.1 (basic helix-loop-helix protein 100)

HSP 1 Score: 50.1 bits (118), Expect = 2.1e-06
Identity = 35/108 (32.41%), Postives = 58/108 (53.70%), Query Frame = 0 

Query: 30  QLLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTRE---YLTKLREQVSELSH 89
           +L H  +ER RR+K+N  F +LRS LPP  +  KLSV AT  +   Y+ +L+EQV +L  
Sbjct: 63  KLNHNASERERRKKINTMFSSLRSCLPPTNQTKKLSVSATVSQALKYIPELQEQVKKLMK 122

Query: 90  KNQMLLEAQSQGEETANSLLNERFTVRVSHAPPSINGTEIIDLEITVR 135
           K + L    S   +   +  N +    V+    +++ T + + E+ V+
Sbjct: 123 KKEELSFQISGQRDLVYTDQNSKSEEGVTSYASTVSSTRLSETEVMVQ 170

[Close]
BLAST of Carg18628 vs. Swiss-Prot
Match: sp|Q9LTS4|BH041_ARATH (Putative transcription factor bHLH041 OS=Arabidopsis thaliana OX=3702 GN=BHLH41 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.7e-26
Identity = 69/137 (50.36%), Postives = 96/137 (70.07%), Query Frame = 0 

Query: 26  PGSAQLLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSELS 85
           P + QL HMI+ER+RREKLN SFQALRSLLPPGTKKDK SVL+  RE L+ L+ ++S+L 
Sbjct: 283 PSATQLQHMISERKRREKLNESFQALRSLLPPGTKKDKASVLSIAREQLSSLQGEISKLL 342

Query: 86  HKNQMLLEAQSQGE-ETANSLL-NERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADI 145
            +N+  +EA+  GE E  N L   ERF VR+ H P S +    +DL + +RG+   + D+
Sbjct: 343 ERNRE-VEAKLAGEREIENDLRPEERFNVRIRHIPESTSRERTLDLRVVLRGDIIRVDDL 402

Query: 146 VIRVLEFMKNVVNVGVI 161
           +IR+LEF+K + NV ++
Sbjct: 403 MIRLLEFLKQINNVSLV 418

[Close]
BLAST of Carg18628 vs. Swiss-Prot
Match: sp|E3SXU4|BHLHW_PEA (Basic helix-loop-helix protein A OS=Pisum sativum OX=3888 GN=BHLH PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-07
Identity = 41/123 (33.33%), Postives = 68/123 (55.28%), Query Frame = 0 

Query: 33  HMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSELSHKNQMLL 92
           H++AERRRREKLN  F  LRSL+P  TK DK S+L  T EYL +LR ++ +L  +N+   
Sbjct: 469 HVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNR--- 528

Query: 93  EAQSQGEETANSLL---NERFTVRVSHAPPSINGTEIIDLEITVRGEGSLMADIVIRVLE 152
             Q + E++  ++L    E+  VR+     +  G     +E+    + S++    +  +E
Sbjct: 529 --QMESEKSGVTVLVGPTEKKKVRIVEGNGTGGGVRAKAVEVVASVQVSIIESDALLEIE 586

[Close]
BLAST of Carg18628 vs. Swiss-Prot
Match: sp|Q9FT81|TT8_ARATH (Transcription factor TT8 OS=Arabidopsis thaliana OX=3702 GN=TT8 PE=1 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 9.1e-07
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 0 

Query: 31  LLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSELSHKNQM 90
           L H++AERRRREKLN  F  LRS++P  TK DK+S+L  T  Y+  LR++V EL + +  
Sbjct: 362 LSHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHH- 421

Query: 91  LLEAQSQGEETANSLLNERFTVRV 115
             E Q +   T     +E   V +
Sbjct: 422 --EQQHKRTRTCKRKTSEEVEVSI 442

[Close]
BLAST of Carg18628 vs. Swiss-Prot
Match: sp|Q9ZPY8|AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana OX=3702 GN=AIB PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 1.3e-05
Identity = 42/133 (31.58%), Postives = 72/133 (54.14%), Query Frame = 0 

Query: 24  RRPGSAQ---LLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQ 83
           R+P + +   L H+ AER+RREKLN  F ALRS++P  +K DK S+L     Y+ +L+E+
Sbjct: 384 RKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEK 443

Query: 84  VSELSHKNQMLLEAQSQGEETANSLLNERFTVRVSHAPPSINGTEIIDLEITVRGEGSLM 143
           V         ++E +  G + +   L+E  T+ V  +P      + ++ E+ VR    L 
Sbjct: 444 VK--------IMEDERVGTDKS---LSESNTITVEESPEV--DIQAMNEEVVVRVISPLD 503

Query: 144 ADIVIRVLEFMKN 154
           +    R+++ M+N
Sbjct: 504 SHPASRIIQAMRN 503

[Close]
BLAST of Carg18628 vs. Swiss-Prot
Match: sp|Q9CAD0|EGL1_ARATH (Transcription factor EGL1 OS=Arabidopsis thaliana OX=3702 GN=BHLH2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.7e-05
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 33  HMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSEL 85
           H ++E++RREKLN  F  LRS++P  +K DK+S+L  T EYL  L+++V EL
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQEL 457

[Close]
BLAST of Carg18628 vs. TrEMBL
Match: tr|A0A1S3CAK0|A0A1S3CAK0_CUCME (putative transcription factor bHLH041 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498527 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 112/171 (65.50%), Postives = 129/171 (75.44%), Query Frame = 0 

Query: 24  RRPGSAQLLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSE 83
           +RP SAQL+HMIAERRRREKLN SF ALRS+LPP TKKDK SVLATTREYLTKL+ QVSE
Sbjct: 279 KRPASAQLIHMIAERRRREKLNESFLALRSILPPQTKKDKASVLATTREYLTKLKAQVSE 338

Query: 84  LSHKNQMLLEAQS------QGEETANSLLNERFTVRVSHAPPSINGTE--IIDLEITVRG 143
           LSH+N +LL+AQ           T  S LNE FTV+VS+APPS   T+  +IDLEI VRG
Sbjct: 339 LSHRNHILLQAQDLHIATHHQSTTPTSSLNEPFTVKVSYAPPSPGSTDEIVIDLEIIVRG 398

Query: 144 E-GSLMADIVIRVLEFMKNVVNVGVILSFHGIEQISPSSLVSRLRFRFSLQ 186
           + G LM DI IRVL+F+K +VNV V+LSFH     SPS L +RL FRFSLQ
Sbjct: 399 DMGPLMTDIAIRVLQFLKTIVNVRVVLSFHANHTTSPSPL-TRLGFRFSLQ 448

[Close]
BLAST of Carg18628 vs. TrEMBL
Match: tr|A0A1S3C9K1|A0A1S3C9K1_CUCME (putative transcription factor bHLH041 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498527 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 112/171 (65.50%), Postives = 129/171 (75.44%), Query Frame = 0 

Query: 24  RRPGSAQLLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSE 83
           +RP SAQL+HMIAERRRREKLN SF ALRS+LPP TKKDK SVLATTREYLTKL+ QVSE
Sbjct: 274 KRPASAQLIHMIAERRRREKLNESFLALRSILPPQTKKDKASVLATTREYLTKLKAQVSE 333

Query: 84  LSHKNQMLLEAQS------QGEETANSLLNERFTVRVSHAPPSINGTE--IIDLEITVRG 143
           LSH+N +LL+AQ           T  S LNE FTV+VS+APPS   T+  +IDLEI VRG
Sbjct: 334 LSHRNHILLQAQDLHIATHHQSTTPTSSLNEPFTVKVSYAPPSPGSTDEIVIDLEIIVRG 393

Query: 144 E-GSLMADIVIRVLEFMKNVVNVGVILSFHGIEQISPSSLVSRLRFRFSLQ 186
           + G LM DI IRVL+F+K +VNV V+LSFH     SPS L +RL FRFSLQ
Sbjct: 394 DMGPLMTDIAIRVLQFLKTIVNVRVVLSFHANHTTSPSPL-TRLGFRFSLQ 443

[Close]
BLAST of Carg18628 vs. TrEMBL
Match: tr|A0A0A0LHR9|A0A0A0LHR9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000420 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.2e-41
Identity = 104/173 (60.12%), Postives = 127/173 (73.41%), Query Frame = 0 

Query: 24  RRPGSAQLLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSE 83
           +RP SAQL+HMIAERRRREKLN SF ALRS+LPP TKKDK SVLAT REYLTKL+ QVSE
Sbjct: 134 KRPASAQLIHMIAERRRREKLNESFLALRSILPPQTKKDKASVLATAREYLTKLKAQVSE 193

Query: 84  LSHKNQMLLEAQS-------QGEETANSLLNERFTVRVSHAPP---SINGTEIIDLEITV 143
           LSH+N +LL+AQ            T  S LN++FTV VS+ PP   S + T ++DLEI +
Sbjct: 194 LSHRNHILLQAQDPHIRTVHHQPTTPTSSLNQQFTVNVSYEPPPPGSTDETIVVDLEIII 253

Query: 144 RGEGS-LMADIVIRVLEFMKNVVNVGVILSFHGIEQISPSSLVSRLRFRFSLQ 186
           RG+ S LM D  IR+L+F+K++VN  V+LSFH    I+PS L +RL FRFSLQ
Sbjct: 254 RGDSSQLMTDTAIRILQFLKSIVNARVVLSFHANHMIAPSPL-TRLGFRFSLQ 305

[Close]
BLAST of Carg18628 vs. TrEMBL
Match: tr|A0A1Q3CE59|A0A1Q3CE59_CEPFO (HLH domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21962 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.8e-31
Identity = 89/168 (52.98%), Postives = 115/168 (68.45%), Query Frame = 0 

Query: 28  SAQLLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSELSHK 87
           + QL HMI+ER+RREKLN SFQALRSLLPPGTKKDK SVLA+TRE+L+ L+ Q+ ELS +
Sbjct: 309 TTQLHHMISERKRREKLNESFQALRSLLPPGTKKDKASVLASTREFLSTLKAQIEELSKR 368

Query: 88  NQML--------LEAQSQGEETANSLLNERFTVRVSHAPPSINGTEIIDLEITVRGEGSL 147
           NQ+L         EA S GEE + S LNER  VR++H P S     IIDL +TVRGE   
Sbjct: 369 NQLLEAQVLPAAREALSHGEEASGS-LNERLNVRITHVPESTPEERIIDLHVTVRGE-CH 428

Query: 148 MADIVIRVLEFMKNVVNVGVILSFHGIEQISPSSLVSRLRFRFSLQVC 188
           MAD+VIR+LEF+K   NV  ++S     +++ S+ V+ +  R  + VC
Sbjct: 429 MADMVIRILEFLKQDNNVN-LMSIEANTRMTQSTSVNVVILRLRVVVC 473

[Close]
BLAST of Carg18628 vs. TrEMBL
Match: tr|A0A1S3BPM6|A0A1S3BPM6_CUCME (putative transcription factor bHLH041 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492336 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 8.2e-29
Identity = 87/157 (55.41%), Postives = 110/157 (70.06%), Query Frame = 0 

Query: 25  RPGSAQLLHMIAERRRREKLNGSFQALRSLLPPGTKKDKLSVLATTREYLTKLREQVSEL 84
           RP S+QL H+I+ERRRREKLN SFQAL+SLLPPGTKKDK SVL TTREY++ L+ QV+EL
Sbjct: 335 RPTSSQLHHVISERRRREKLNDSFQALKSLLPPGTKKDKGSVLTTTREYMSSLKAQVAEL 394

Query: 85  SHKNQMLLEAQ----SQGEETANSLL----NERFTVRVSHAPPSINGTEIIDLEITVRGE 144
           S +NQ  LEAQ    S+ EE   ++L    + RF V +S    S +  +IIDL I  RGE
Sbjct: 395 SRRNQQ-LEAQLLQSSKEEEKEEAILFPREDIRFRVGISQVQESTSEGQIIDLNIATRGE 454

Query: 145 GSLMADIVIRVLEFMKNVVNVGVILSFHGIEQISPSS 174
            S + +IVI VLEF++ + NV V LS  G  Q++PSS
Sbjct: 455 SSSLTNIVIGVLEFLRQLNNVRV-LSMDGNTQLTPSS 489

The following BLAST results are available for this feature:
BLAST of Carg18628 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022965417.14.3e-7493.49uncharacterized protein LOC111465335 [Cucurbita maxima][more]
XP_022937889.11.8e-6495.14uncharacterized protein LOC111444143 [Cucurbita moschata][more]
XP_023537999.13.1e-6493.71uncharacterized protein LOC111798884 [Cucurbita pepo subsp. pepo][more]
XP_022154663.12.2e-4968.48putative transcription factor bHLH041 [Momordica charantia][more]
XP_008459381.12.7e-4465.50PREDICTED: putative transcription factor bHLH041 isoform X1 [Cucumis melo][more]
BLAST of Carg18628 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G56960.13.7e-2750.36basic helix-loop-helix (bHLH) DNA-binding family protein[more]
AT4G09820.15.0e-0841.67basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT2G46510.17.3e-0731.58ABA-inducible BHLH-type transcription factor[more]
AT1G63650.19.5e-0750.00basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT2G41240.12.1e-0632.41basic helix-loop-helix protein 100[more]
BLAST of Carg18628 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LTS4|BH041_ARATH6.7e-2650.36Putative transcription factor bHLH041 OS=Arabidopsis thaliana OX=3702 GN=BHLH41 ... [more]
sp|E3SXU4|BHLHW_PEA1.4e-0733.33Basic helix-loop-helix protein A OS=Pisum sativum OX=3888 GN=BHLH PE=3 SV=1[more]
sp|Q9FT81|TT8_ARATH9.1e-0741.67Transcription factor TT8 OS=Arabidopsis thaliana OX=3702 GN=TT8 PE=1 SV=2[more]
sp|Q9ZPY8|AIB_ARATH1.3e-0531.58Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana OX=3702 GN=... [more]
sp|Q9CAD0|EGL1_ARATH1.7e-0550.00Transcription factor EGL1 OS=Arabidopsis thaliana OX=3702 GN=BHLH2 PE=1 SV=1[more]
BLAST of Carg18628 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CAK0|A0A1S3CAK0_CUCME1.8e-4465.50putative transcription factor bHLH041 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A1S3C9K1|A0A1S3C9K1_CUCME1.8e-4465.50putative transcription factor bHLH041 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A0A0LHR9|A0A0A0LHR9_CUCSA3.2e-4160.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000420 PE=4 SV=1[more]
tr|A0A1Q3CE59|A0A1Q3CE59_CEPFO8.8e-3152.98HLH domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_2196... [more]
tr|A0A1S3BPM6|A0A1S3BPM6_CUCME8.2e-2955.41putative transcription factor bHLH041 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18628-RACarg18628-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 74..94
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 16..160
NoneNo IPR availablePANTHERPTHR12565:SF157TRANSCRIPTION FACTOR BHLH041-RELATEDcoord: 16..160
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 34..83
e-value: 1.2E-12
score: 58.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 33..77
e-value: 2.7E-9
score: 36.7
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 28..77
score: 14.761
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 26..82
e-value: 5.07481E-11
score: 54.9127
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3DG3DSA:4.10.280.10coord: 23..94
e-value: 5.2E-14
score: 54.0
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILYSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 29..96

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18628Cla016834Watermelon (97103) v1carwmB0900
Carg18628Csa2G000420Cucumber (Chinese Long) v2carcuB0911
Carg18628MELO3C004627Melon (DHL92) v3.5.1carmeB0885
Carg18628ClCG11G001730Watermelon (Charleston Gray)carwcgB0870
Carg18628CSPI02G00420Wild cucumber (PI 183967)carcpiB0931
Carg18628Cucsa.117060Cucumber (Gy14) v1carcgyB1014
Carg18628CmaCh12G013020Cucurbita maxima (Rimu)carcmaB1236
Carg18628CmoCh12G013360Cucurbita moschata (Rifu)carcmoB1207
Carg18628Lsi11G001850Bottle gourd (USVL1VR-Ls)carlsiB812
Carg18628Lsi06G002900Bottle gourd (USVL1VR-Ls)carlsiB817
Carg18628Cp4.1LG07g10550Cucurbita pepo (Zucchini)carcpeB1248
Carg18628CsGy2G000390Cucumber (Gy14) v2carcgybB0882
Carg18628MELO3C004627.2Melon (DHL92) v3.6.1carmedB0893
Carg18628CsaV3_2G001440Cucumber (Chinese Long) v3carcucB0934
Carg18628Cla97C11G208100Watermelon (97103) v2carwmbB0933
Carg18628Bhi02G001551Wax gourdcarwgoB1043
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg18628Cucumber (Gy14) v2carcgybB0885
Carg18628Silver-seed gourdcarcarB046
Carg18628Silver-seed gourdcarcarB108
Carg18628Silver-seed gourdcarcarB238
Carg18628Silver-seed gourdcarcarB527
Carg18628Silver-seed gourdcarcarB528
Carg18628Cucumber (Gy14) v2carcgybB0881
Carg18628Cucumber (Gy14) v1carcgyB1016
Carg18628Cucumber (Gy14) v1carcgyB1017
Carg18628Cucurbita maxima (Rimu)carcmaB1234
Carg18628Cucurbita maxima (Rimu)carcmaB1235
Carg18628Cucurbita maxima (Rimu)carcmaB1237
Carg18628Cucurbita moschata (Rifu)carcmoB1205
Carg18628Cucurbita moschata (Rifu)carcmoB1206
Carg18628Cucurbita moschata (Rifu)carcmoB1208
Carg18628Cucurbita pepo (Zucchini)carcpeB1244
Carg18628Cucurbita pepo (Zucchini)carcpeB1245
Carg18628Cucurbita pepo (Zucchini)carcpeB1246
Carg18628Cucurbita pepo (Zucchini)carcpeB1247
Carg18628Wild cucumber (PI 183967)carcpiB0929
Carg18628Wild cucumber (PI 183967)carcpiB0933
Carg18628Cucumber (Chinese Long) v2carcuB0909
Carg18628Cucumber (Chinese Long) v2carcuB0913
Carg18628Cucumber (Chinese Long) v3carcucB0932
Carg18628Cucumber (Chinese Long) v3carcucB0936
Carg18628Bottle gourd (USVL1VR-Ls)carlsiB814
Carg18628Melon (DHL92) v3.5.1carmeB0882
Carg18628Melon (DHL92) v3.5.1carmeB0883
Carg18628Melon (DHL92) v3.6.1carmedB0890
Carg18628Melon (DHL92) v3.6.1carmedB0891
Carg18628Watermelon (Charleston Gray)carwcgB0872
Carg18628Watermelon (Charleston Gray)carwcgB0875
Carg18628Watermelon (97103) v1carwmB0897
Carg18628Watermelon (97103) v1carwmB0898
Carg18628Watermelon (97103) v2carwmbB0935
Carg18628Watermelon (97103) v2carwmbB0938
Carg18628Watermelon (97103) v2carwmbB0940
Carg18628Wax gourdcarwgoB1041
Carg18628Wax gourdcarwgoB1040
Carg18628Wax gourdcarwgoB1039