Carg18562 (gene) Silver-seed gourd

Overview
NameCarg18562
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRibonuclease III domain containing protein
LocationCucurbita_argyrosperma_scaffold_109 : 457647 .. 461547 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTTTCTTCTTCTTTTGTTAAACTCTCATCCTCGACTAATTACTCTTTCTCGTCTTCTTTTACTCCATTTATTGTAAAAATTCACCCCAATAGTCCCAATTTCCCGAACCCCACATCGGGAAATTTGCGTATTTTTGCAGTTGCAGTCGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTAAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTGCCCCCAAGAAGGTATATTCTTCGGCCGCCACTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCCGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAACAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGAGACGACAATCCCGCAAAACAATTCGACACTCTCTCTTATATTTGGCCTTCCAGCATCCCTCATGCGAAAGAACAAAGGCACGACACATAAGATCAGGGCACTCCAGGCTTTTGTTTTTGGGGCAATACGTGCTCGAATTGGCGTTAGCAGAGTATTTTTTACAGAGGTATCCGAGGGAGTCGCCTGGTCCAATGAGGAAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCAAAGTGGATTAAGGCTGCCAGTTTACAGAATTTGATATTCCCATATGATGATATGGATAAGCTGATCAGGAAGGACCGTGTATGGTATTGTCTTTTCATTGGTTCTAATGCTTCTTTTTTAATCATGCTATGAGTAAGATACTTGTAAGATATAGTGTTTTGAGCTTTAAGTGATTTGAGAGTTCTTTCATTGATGTGTTAAGCTTCATATTAAGTTTGAGAAGCATCACAAAATATGGGAAGCTGATTATGCAATATGATGATAATGCGTTGTGCATAGTTGCTGCTCCTGGAAATCCAAAGTTAGTGAATTTTGATGGTTGTGGACTTTGAGTTTCTTTATATAGATGGCAAACCCATTTAGTGAAGATAATGCTGCATAAAACCAAGAAGAGACCATGTTAAGGAGGTTCTTTGAGTCAAAACTGACAATGTGGCCTAAAGCCATAATTTAAGGTTGATAAGAACCCTAATCGTCAGCCCAACATAAGTTTTTGTTGAAGGAAAAACATAGTAATTAACACCTCCTTATATGAAATTTGTATCAAGCAAAAGATAAAAGCTAGAATTAGATTACCGAAGATTTAGAAGTAAGATTTTTAATTCTAAATTGAGTCACCCCACAATCGAACTTGATCGAGGCTTGATTGAATGACTCGGCAATTCTACGACAATAATTGTTTGAAACTTAGAAATGACAAAATTGATGCTCGGATTTCTAAGGAAAACGTCCCAATTCGAGATTCAATTTCATTCGTTTACCAATCTGATTTTTACACAACATATTGTGGGTATTTATAGTCTCCCGACTAAAGACATTTGTGGACATTTGTGGCCTGGATACAATCCTGATCCCCTTTAATCCCCATGAAAGATGAAGTCAATTTTGACCATTTGACATTTTAAAGTTTTCTAACTCCAACCGTGCAAATATTCAGAATGTTTGTTGAATCTACCAAAGAAAATGAATGTTTGTTGAATCTTCTTGGCCTTGTATCGTGTAATAGGTCAAGTTGTAACATTTGGAACACCGTGATTCTTATCAAATGTTATTTAGGTGGCGTTGTGATATGAACCAAGAGACATCATTCATACAATATATTTCAATGAAGATGTGAAGAAAATGTTGTCAAAATTATCAAAAGAGGTTGCAATTCATGCCACATTGAAAGGGAATGAAGTTTGATGGTTATAAATTTTGGGTGGGTTGATTTCCATATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGTCCCAAGATCGAAACCTATGAACTCCTCCAAATTCGTTTGTCTTTCACAAACTTATTTCAGGCTAATATGGTTAATTTTTACCAGCTTGGCTTCGGCAAATCTGGCTTTGATATCACTTGTCACGGGATCACATATAAGATAAAGATTCGGCCTTGTGAAGCCTGGTATCATGGTGGGACTTGGGAGATCGGATTTTCTGTACCGACTTGTGTACTTAGTTTGCATGATTCATCGAAGTCTCATTTTTGTATGATGGAACATGTACTATTAGTTGATACAGCGAAACATGTATTGTGAGATCCTACATCGGCTGGAGAGGAGAACGTAACATTCCTTATAAGGGTGTGGAAACTCTCTCTAGTAGACGCGTTTTAAAACCTTGAGAGAAAGCCTAAAAAGGAAAGTCCGAAGAGGACAATATCTGCTAACGGTGGGCTTGAACTATTACAAATAAGTCAAATACCGGACAATGTGCTAGTGAGGACGCTGGTCCCCTAAGGGGGTGGATTGTGAGATCTCACATTGGTTGGAAAGAGAACGAAACATTCCTTATAAAAGTGTGGAAACCTCTCCCTAAACACGTTTTCAGAAGAGAAAGCCCAAAGAGGACGATATCTACTAGTGGTAGGACATGCTTTCACGTCTAATCACGAGTGAACTAACCTACTTATGATTAGTAACTTAAAATTCCCATCTTTCCTCTTTCTATTACACTGATTCAATGTATTATATCAAACAATTTGAAACTAATATTTACTTACTTCAAGCAGATCTGTAATTGTGGGCGTTGTTTGGGGCAATATATTTATGTTTCGGAATGCCAGAAGTGTATCGGGTCCTTTTCGAAGTGTTCGGAATGGATCCCGATTCAGAGGAATGTGAACCGAGATTACGCAGGCAACTTGAAGATGTAGATTATGTCTCTGTTGATTGCAGGTAATTACACCTTATCTGTGAAGTGATAATTTGTCAATGTGTATGGTGTAGAACGTTTGCTTGATGCTTGATATAGATCAATTTAATCCTGTTTATCAAGAAAATCTCAGGCAAGTTCTTAATCAAATGCAGCTTTGCCTTTTGCACCCATCAAAATACAAGTTCGAGCATCCTCGTTTCTGCTACGAACGATTAGAATACCTCGGCCCAAAGATCCAGGTAAGATCGTTTACATGTATTAAGGAGAGATCATACTCCTTTCTCTCTATCAACATCCTGTCTACTTGTGGCGTTCAGTCGGAGCGTGTTCTTCGTTGTAGGATATGTGTATATATATATTGGGCAATGTTTTTTTTTAAAACTTGTCTCCTGCAATATTCCTTCAATCCAGTTTCTGTCTCTTCTGATGGGATGCGATTTTTTTTTTTTTTTTTTTTTTGTTCTATTTTGATTTTTTATTTAGTTTGTTTATTTGTAACTAAGAGATTTTTTAGAATATTAAAAATTATGAGTGTAACCACTCTGGCCCACCACAAGCAAATATGGCTCTATTTGGACTTTTGTTGTTGTGCTTTCTCTCAAGGCTTTAAAACGCGTTTGCTAACGGTTTCCATACCCTTATAAATGGTGATTTCTTCTCTTTCCCAACCAATGTGTGACATCACAATCCACCCATTTCAGGGCCCAGCGTCCTCACTCGCAATCTTTCCTTTTTTCGATCGATGTGGGACTGCCCCCAAATACACTCCCTTTGGGGCCTAGCATCTTTACTAGCACACCGCTTCGGTGTTTGGCTCTGATACCATTGATAACGACTCATATTTATCACTAGCAGATATTGTTCTTTTGGGCTTTTCTTTCGGGCGGCTAGGAGTAAAATACAAAAATTAAAAATTATGAATTCATACATTTTTAATTTTATATAAAAAAAAGTTAGACCCATTAAATTCGTAAAATATTGGAGTATTATTGTATATTTTTTTTAGGTTAAAAAAATTTAA

mRNA sequence

ATGGAGCTTTCTTCTTCTTTTGTTAAACTCTCATCCTCGACTAATTACTCTTTCTCGTCTTCTTTTACTCCATTTATTGTAAAAATTCACCCCAATAGTCCCAATTTCCCGAACCCCACATCGGGAAATTTGCGTATTTTTGCAGTTGCAGTCGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTAAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTGCCCCCAAGAAGGTATATTCTTCGGCCGCCACTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCCGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAACAAGCCCTTGGATACCCCCTTGAGCCCTCCGATACATCCCTCATGCGAAAGAACAAAGGCACGACACATAAGATCAGGGCACTCCAGGCTTTTGTTTTTGGGGCAATACGTGCTCGAATTGGCGTTAGCAGAAGGTATCCGAGGGAGTCGCCTGGTCCAATGAGGAAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCAAAGTGGATTAAGGCTGCCAGTTTACAGAATTTGATATTCCCATATGATGATATGGATAAGCTGATCAGGAAGGACCAAGTGTATCGGGTCCTTTTCGAAGTGTTCGGAATGGATCCCGATTCAGAGGAATGTGAACCGAGATTACGCAGGCAACTTGAAGATGTAGATTATGTCTCTGTTGATTGCAGGCAAGTTCTTAATCAAATGCAGCTTTGCCTTTTGCACCCATCAAAATACAAGTTCGAGCATCCTCGTTTCTGCTACGAACGATTAGAATACCTCGGCCCAAAGATCCAGGTTAAAAAAATTTAA

Coding sequence (CDS)

ATGGAGCTTTCTTCTTCTTTTGTTAAACTCTCATCCTCGACTAATTACTCTTTCTCGTCTTCTTTTACTCCATTTATTGTAAAAATTCACCCCAATAGTCCCAATTTCCCGAACCCCACATCGGGAAATTTGCGTATTTTTGCAGTTGCAGTCGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTAAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTGCCCCCAAGAAGGTATATTCTTCGGCCGCCACTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCCGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAACAAGCCCTTGGATACCCCCTTGAGCCCTCCGATACATCCCTCATGCGAAAGAACAAAGGCACGACACATAAGATCAGGGCACTCCAGGCTTTTGTTTTTGGGGCAATACGTGCTCGAATTGGCGTTAGCAGAAGGTATCCGAGGGAGTCGCCTGGTCCAATGAGGAAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCAAAGTGGATTAAGGCTGCCAGTTTACAGAATTTGATATTCCCATATGATGATATGGATAAGCTGATCAGGAAGGACCAAGTGTATCGGGTCCTTTTCGAAGTGTTCGGAATGGATCCCGATTCAGAGGAATGTGAACCGAGATTACGCAGGCAACTTGAAGATGTAGATTATGTCTCTGTTGATTGCAGGCAAGTTCTTAATCAAATGCAGCTTTGCCTTTTGCACCCATCAAAATACAAGTTCGAGCATCCTCGTTTCTGCTACGAACGATTAGAATACCTCGGCCCAAAGATCCAGGTTAAAAAAATTTAA

Protein sequence

MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKNNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAIRARIGVSRRYPRESPGPMRKRVFALIGKRNLPKWIKAASLQNLIFPYDDMDKLIRKDQVYRVLFEVFGMDPDSEECEPRLRRQLEDVDYVSVDCRQVLNQMQLCLLHPSKYKFEHPRFCYERLEYLGPKIQVKKI
Homology
[Close]
BLAST of Carg18562 vs. NCBI nr
Match: XP_022963342.1 (LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 465.3 bits (1196), Expect = 1.6e-127
Identity = 267/429 (62.24%), Postives = 281/429 (65.50%), Query Frame = 0 

Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDT-------------------------SL 180
           PSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+                         + 
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPSKQFDTXLYLAFQHPSCERTK 180

Query: 181 MRKNKGTTHKIRALQAFVFGAIRARIGVSRRYPRESPGPMRKRVFALIGKRNLPKWIKAA 240
            R  +    ++  L  +V     A   + +RYP+ESPGPMR+RVFALIGKRNLPKWIKAA
Sbjct: 181 ARHIRSGHSRLLFLGQYVLELALAEYFL-QRYPKESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEE 300
           SLQNLIFPYDDMDKLIRKD                       +VYRVLFEVFGMDPDSEE
Sbjct: 241 SLQNLIFPYDDMDKLIRKDREPPVKSVFWALFGAIYLCFGIPEVYRVLFEVFGMDPDSEE 300

Query: 301 CEPRLRRQLEDVDYVSVDCR---------------------------------------- 309
           CEPRLRRQLEDVDYVSV+                                          
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMITYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

[Close]
BLAST of Carg18562 vs. NCBI nr
Match: XP_023003680.1 (LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 456.1 bits (1172), Expect = 9.8e-125
Identity = 265/431 (61.48%), Postives = 276/431 (64.04%), Query Frame = 0 

Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSFVK SSSTNYSFSSSFTPFIVK+HPNSPNFPNPTSG+LRIFAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKFSSSTNYSFSSSFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVDPQQELPKN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVF------ 180
           PSSRLNNA KTW DEYLLEAKQALGYPLEPSD+     N     +   L    F      
Sbjct: 121 PSSRLNNAXKTWTDEYLLEAKQALGYPLEPSDS---YGNDNPAKQFDTLLYLAFQHPSCE 180

Query: 181 --GAIRARIGVSR-------------------RYPRESPGPMRKRVFALIGKRNLPKWIK 240
              A   R G SR                   RYPRESPGPMR+RVFALIGKRNLPKWIK
Sbjct: 181 RTKARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIK 240

Query: 241 AASLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDS 300
           AASLQNLIFPYDDMDK+IRKD                       +VYRVLFEVFGMDPDS
Sbjct: 241 AASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDS 300

Query: 301 EECEPRLRRQLEDVDYVSVDCR-------------------------------------- 309
           EECEPRLRRQLEDVDYVSV+                                        
Sbjct: 301 EECEPRLRRQLEDVDYVSVEFEDKKISWQDMIAYKPPEDALFAHPRLFRACVPPGMHRFR 360

[Close]
BLAST of Carg18562 vs. NCBI nr
Match: XP_023518761.1 (LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 455.3 bits (1170), Expect = 1.7e-124
Identity = 262/429 (61.07%), Postives = 278/429 (64.80%), Query Frame = 0 

Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSFVK SSSTNY FSSSFTPFIVK+HPNS NFPNPTSGNLR+FAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKFSSSTNYYFSSSFTPFIVKLHPNSLNFPNPTSGNLRVFAVAVDPQQELPKN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           +PQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  HPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDT-------------------------SL 180
           PSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+                         + 
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK 180

Query: 181 MRKNKGTTHKIRALQAFVFGAIRARIGVSRRYPRESPGPMRKRVFALIGKRNLPKWIKAA 240
            R  +    ++  L  +V     A   + +RYPRESPGPMR+R FALIGKRNLPKWIKAA
Sbjct: 181 ARHIRSGHSRLLFLGQYVLELALAEYFL-QRYPRESPGPMRERFFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEE 300
           SLQNLIFPYDDMDKLIRKD                       +VYRVLFEVFGMDPDSEE
Sbjct: 241 SLQNLIFPYDDMDKLIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDSEE 300

Query: 301 CEPRLRRQLEDVDYVSVDCR---------------------------------------- 309
           CEPRLRRQLEDVDYVSV+                                          
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMITYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

[Close]
BLAST of Carg18562 vs. NCBI nr
Match: XP_004141878.1 (PREDICTED: uncharacterized protein LOC101207336 [Cucumis sativus] >KGN48593.1 hypothetical protein Csa_6G494980 [Cucumis sativus])

HSP 1 Score: 444.9 bits (1143), Expect = 2.3e-121
Identity = 254/428 (59.35%), Postives = 275/428 (64.25%), Query Frame = 0 

Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSFVKLSS +NYSFSSS TPFIVKIHPN P FPNP+S NLR+FAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           NPQRLLKELAERKRATSPKKKVPPRR+ILRPPLDDK+LAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDT--------------------SLMRKNK 180
           PSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+                        + K
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK 180

Query: 181 GTTHKIRALQAFVFGAIRARIGVS----RRYPRESPGPMRKRVFALIGKRNLPKWIKAAS 240
               +    + F  G     + ++    +RYPRESPGPMR+RVFALIGKRNLPKWIKAAS
Sbjct: 181 ARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAAS 240

Query: 241 LQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEEC 300
           LQNLIFPYDDMDK+IRKD                       +VYRVLFEVFGMDPD++EC
Sbjct: 241 LQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKEC 300

Query: 301 EPRLRRQLEDVDYVSV-------------------------------------------- 309
           EPRLRRQLEDVDYVSV                                            
Sbjct: 301 EPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNI 360

[Close]
BLAST of Carg18562 vs. NCBI nr
Match: XP_008440359.1 (PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucumis melo])

HSP 1 Score: 444.5 bits (1142), Expect = 3.0e-121
Identity = 261/435 (60.00%), Postives = 277/435 (63.68%), Query Frame = 0 

Query: 1   MELSSSFVKLSS-STNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPK 60
           MELSSSFVKLSS S NYSFSSS TPFIVKIHPN P FPNP+SGNLRIFAVAVDPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAIR- 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPL+PSD      + G  +  +     ++ A + 
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSD------SYGDDNPAKQFDTLLYLAFQH 180

Query: 181 ----------ARIGVSR-------------------RYPRESPGPMRKRVFALIGKRNLP 240
                      R G SR                   RYPRESPGPMR+RVFALIGKRNLP
Sbjct: 181 PSCERTKARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLP 240

Query: 241 KWIKAASLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGM 300
           KWIKAASLQNLIFPYDDMDK+IRKD                       +VYRVLFEVFGM
Sbjct: 241 KWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGM 300

Query: 301 DPDSEECEPRLRRQLEDVDYVSV------------------------------------- 309
           DPD+EECEPRLRRQLEDVDYVSV                                     
Sbjct: 301 DPDAEECEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGM 360

[Close]
BLAST of Carg18562 vs. TAIR10
Match: AT4G37510.1 (Ribonuclease III family protein)

HSP 1 Score: 330.9 bits (847), Expect = 8.7e-91
Identity = 214/428 (50.00%), Postives = 241/428 (56.31%), Query Frame = 0 

Query: 4   SSSFVKL--SSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKNN 63
           SSS +++  SS+   SFSSS + F  K              NLRI A      Q LP+++
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDS 68

Query: 64  PQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLP 123
           PQRLLKELA+RK AT PKKKVPP+R+ILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 124 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAI-RAR 183
           SS+LNNADKTW+DEYLLE KQALGY LEPS+ SL   N           AF   +  RAR
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSE-SLGDDNPAKHFDTLLYLAFQHPSCDRAR 188

Query: 184 I-----GVSR-------------------RYPRESPGPMRKRVFALIGKRNLPKWIKAAS 243
                 G SR                   RYPRESPGPMR+RVFALIGKR LPKWIKAAS
Sbjct: 189 ARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAAS 248

Query: 244 LQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEEC 303
           LQNLIFPYDDMDKLIRK+                       +VYRVLFEVFGMDPD++EC
Sbjct: 249 LQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADEC 308

Query: 304 EPRLRRQLEDVDYVSVD------------------------------------------- 309
           +PR RRQLEDVDYVSV+                                           
Sbjct: 309 QPRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNI 368

[Close]
BLAST of Carg18562 vs. Swiss-Prot
Match: sp|Q9SZV0|RNC1_ARATH (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.6e-89
Identity = 214/428 (50.00%), Postives = 241/428 (56.31%), Query Frame = 0 

Query: 4   SSSFVKL--SSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKNN 63
           SSS +++  SS+   SFSSS + F  K              NLRI A      Q LP+++
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDS 68

Query: 64  PQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLP 123
           PQRLLKELA+RK AT PKKKVPP+R+ILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 124 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAI-RAR 183
           SS+LNNADKTW+DEYLLE KQALGY LEPS+ SL   N           AF   +  RAR
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSE-SLGDDNPAKHFDTLLYLAFQHPSCDRAR 188

Query: 184 I-----GVSR-------------------RYPRESPGPMRKRVFALIGKRNLPKWIKAAS 243
                 G SR                   RYPRESPGPMR+RVFALIGKR LPKWIKAAS
Sbjct: 189 ARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAAS 248

Query: 244 LQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEEC 303
           LQNLIFPYDDMDKLIRK+                       +VYRVLFEVFGMDPD++EC
Sbjct: 249 LQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADEC 308

Query: 304 EPRLRRQLEDVDYVSVD------------------------------------------- 309
           +PR RRQLEDVDYVSV+                                           
Sbjct: 309 QPRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNI 368

[Close]
BLAST of Carg18562 vs. Swiss-Prot
Match: sp|Q8S1Z0|RNC1_ORYSJ (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 3.6e-78
Identity = 175/377 (46.42%), Postives = 209/377 (55.44%), Query Frame = 0 

Query: 60  NNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 119
           N+P RLL+ELAERK+A SPKKK PPRR+IL+PPLDD++L +RFL+SPQL+LK+ PLLSSC
Sbjct: 54  NSPSRLLRELAERKKAVSPKKKHPPRRFILKPPLDDERLTQRFLSSPQLSLKALPLLSSC 113

Query: 120 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAIR- 179
           LPS+ L+ AD+TWMDEYLLEAKQALGYPL PS+T     + G     R     ++ A + 
Sbjct: 114 LPSAPLSAADRTWMDEYLLEAKQALGYPLAPSETLGDGDDDGC--PARHFDVLLYLAFQH 173

Query: 180 ------------ARIGVSR-------------------RYPRESPGPMRKRVFALIGKRN 239
                        R G SR                   RYPRESPGPMR+RVFALIGKR 
Sbjct: 174 LDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKRA 233

Query: 240 LPKWIKAASLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVF 299
           +PKWIKAASL NL+FPYDD+DK+IRKD                       +VYRVLFE F
Sbjct: 234 IPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEVYRVLFEAF 293

Query: 300 GMDPDSEECEPRLRRQLEDVDYVSVDCR-------------------------------- 309
           GMDP+ E C+P+LRRQLEDVDYVSV+                                  
Sbjct: 294 GMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPP 353

[Close]
BLAST of Carg18562 vs. Swiss-Prot
Match: sp|A6YSL1|RNC1_MAIZE (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=4577 GN=RNC1 PE=1 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.3e-77
Identity = 176/399 (44.11%), Postives = 215/399 (53.88%), Query Frame = 0 

Query: 40  TSGNLRIFAVAVD-----PQQELPKNNPQRLLKELAERKRATSPKKKVPPRRYILRPPLD 99
           +S  +R+ AVA D                RLL+ELA+RK+A SPKKK PPRR+IL+PPLD
Sbjct: 23  SSRRVRVLAVAADQTPXXXXXXXXXXXXXRLLRELAQRKKAVSPKKKHPPRRFILKPPLD 82

Query: 100 DKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDT- 159
           D++L  RFL+SPQL+LK+ PLLSSCLPS+ L+ AD+TWMDEYLLEAKQALGYPL PS+T 
Sbjct: 83  DERLTRRFLSSPQLSLKALPLLSSCLPSAPLSTADRTWMDEYLLEAKQALGYPLAPSETL 142

Query: 160 ----------------------------SLMRKNKGTTHKIRALQAFVFGAIRARIGVSR 219
                                       + MR  +    ++  L  +V         + +
Sbjct: 143 GEGDDCPARHFDVLFYLAFQHLDPSSERTRMRHVRNGHSRLWFLGQYVLELAFCEFFL-Q 202

Query: 220 RYPRESPGPMRKRVFALIGKRNLPKWIKAASLQNLIFPYDDMDKLIRKD----------- 279
           RYPRESPGPMR+RVFALIGK+ LP+W+KAASL NL+FPYDD+DK+IRKD           
Sbjct: 203 RYPRESPGPMRERVFALIGKKVLPRWLKAASLHNLVFPYDDLDKMIRKDREPPSKAVFWA 262

Query: 280 ------------QVYRVLFEVFGMDPDSEECEPRLRRQLEDVDYVSVDC--RQVLNQ--- 309
                       +VYRVLFE FGMDPD E C+P+LRRQLEDVDYVSV+   RQ+  Q   
Sbjct: 263 IFGAIYLCFGMPEVYRVLFEAFGMDPDDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVA 322

[Close]
BLAST of Carg18562 vs. TrEMBL
Match: tr|A0A0A0KGG7|A0A0A0KGG7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G494980 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 1.5e-121
Identity = 254/428 (59.35%), Postives = 275/428 (64.25%), Query Frame = 0 

Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSFVKLSS +NYSFSSS TPFIVKIHPN P FPNP+S NLR+FAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           NPQRLLKELAERKRATSPKKKVPPRR+ILRPPLDDK+LAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDT--------------------SLMRKNK 180
           PSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+                        + K
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK 180

Query: 181 GTTHKIRALQAFVFGAIRARIGVS----RRYPRESPGPMRKRVFALIGKRNLPKWIKAAS 240
               +    + F  G     + ++    +RYPRESPGPMR+RVFALIGKRNLPKWIKAAS
Sbjct: 181 ARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAAS 240

Query: 241 LQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEEC 300
           LQNLIFPYDDMDK+IRKD                       +VYRVLFEVFGMDPD++EC
Sbjct: 241 LQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKEC 300

Query: 301 EPRLRRQLEDVDYVSV-------------------------------------------- 309
           EPRLRRQLEDVDYVSV                                            
Sbjct: 301 EPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNI 360

[Close]
BLAST of Carg18562 vs. TrEMBL
Match: tr|A0A1S3B1J9|A0A1S3B1J9_CUCME (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484834 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 2.0e-121
Identity = 261/435 (60.00%), Postives = 277/435 (63.68%), Query Frame = 0 

Query: 1   MELSSSFVKLSS-STNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPK 60
           MELSSSFVKLSS S NYSFSSS TPFIVKIHPN P FPNP+SGNLRIFAVAVDPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAIR- 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPL+PSD      + G  +  +     ++ A + 
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSD------SYGDDNPAKQFDTLLYLAFQH 180

Query: 181 ----------ARIGVSR-------------------RYPRESPGPMRKRVFALIGKRNLP 240
                      R G SR                   RYPRESPGPMR+RVFALIGKRNLP
Sbjct: 181 PSCERTKARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLP 240

Query: 241 KWIKAASLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGM 300
           KWIKAASLQNLIFPYDDMDK+IRKD                       +VYRVLFEVFGM
Sbjct: 241 KWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGM 300

Query: 301 DPDSEECEPRLRRQLEDVDYVSV------------------------------------- 309
           DPD+EECEPRLRRQLEDVDYVSV                                     
Sbjct: 301 DPDAEECEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGM 360

[Close]
BLAST of Carg18562 vs. TrEMBL
Match: tr|A0A2P5FSK0|A0A2P5FSK0_9ROSA (Ribonuclease III domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_033800 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 2.4e-103
Identity = 227/436 (52.06%), Postives = 263/436 (60.32%), Query Frame = 0 

Query: 1   MELSSSFVKL----SSS---TNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDP 60
           MELSS+F++L    SSS    NYSF+SSF+ F ++  P +    NP   + RIFAVAVDP
Sbjct: 1   MELSSTFIQLPKPCSSSPTCNNYSFASSFSTFPIQFRPKNRKLTNPFPQSFRIFAVAVDP 60

Query: 61  QQELPKNNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSF 120
           Q+ELP+N+PQRLLKELAERK+ TSPKKKVPPRR++LRPPLDDKKL +RFLNSPQL+LK+F
Sbjct: 61  QRELPQNSPQRLLKELAERKKITSPKKKVPPRRFVLRPPLDDKKLTQRFLNSPQLSLKAF 120

Query: 121 PLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFV 180
           PLLSSCLPSSRLNNADKTW+DEYLLEAKQALGYPLEPSD        G  +  +     +
Sbjct: 121 PLLSSCLPSSRLNNADKTWIDEYLLEAKQALGYPLEPSD------RFGDDNPAKQFDTLL 180

Query: 181 F-----------GAIRARIGVSR-------------------RYPRESPGPMRKRVFALI 240
           +            A   R G SR                   RYPRESPGPMR+RVFALI
Sbjct: 181 YLAFQHPSCERTNARHVRSGHSRLCFLGQYVLELSLAEYFLQRYPRESPGPMRERVFALI 240

Query: 241 GKRNLPKWIKAASLQNLIFPYDDMDKLIRKD-----------------------QVYRVL 300
           GKRNLPKWIKAASLQNLIFPYDDMDKL+RK+                       +VYRVL
Sbjct: 241 GKRNLPKWIKAASLQNLIFPYDDMDKLVRKEREPVVKSVFWALFGAIYLCFGVPEVYRVL 300

Query: 301 FEVFGMDPDSEECEPRLRRQLEDVDYVSVDCR---------------------------- 309
           FEVFGMDP++E+C+PRLRRQLEDVDYVSV+                              
Sbjct: 301 FEVFGMDPEAEDCQPRLRRQLEDVDYVSVEFEGNKLSWQDPPEDALFAHPRLFRACVPPG 360

[Close]
BLAST of Carg18562 vs. TrEMBL
Match: tr|W9QX70|W9QX70_9ROSA (Ribonuclease 3 OS=Morus notabilis OX=981085 GN=L484_005920 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 7.0e-103
Identity = 223/430 (51.86%), Postives = 264/430 (61.40%), Query Frame = 0 

Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSF  L + +NYSFSSSF+ F ++I   + N   PTS NLRIFAVAVDPQQ+LP+N
Sbjct: 1   MELSSSFTNLPNPSNYSFSSSFSTFPIRISLKTLNPKTPTSRNLRIFAVAVDPQQDLPRN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           +PQRLLKELAERK+ATSPKKKVPP+R++LRPPLDDK+LAERFLNSPQL+LKSFPLLSSCL
Sbjct: 61  SPQRLLKELAERKKATSPKKKVPPKRFVLRPPLDDKRLAERFLNSPQLSLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPS------------DTSL------------- 180
           PSSRLNNAD+TW+DEYLLEAKQALGYPLEPS            DT L             
Sbjct: 121 PSSRLNNADQTWIDEYLLEAKQALGYPLEPSYRFGDDNPAKQFDTLLYLAFQHPSCERTN 180

Query: 181 MRKNKGTTHKIRALQAFVFGAIRARIGVSRRYPRESPGPMRKRVFALIGKRNLPKWIKAA 240
            R  +    ++  L  +V     A   + +RYPRESPGPMR+RV+ALIGKRNLPKWIKAA
Sbjct: 181 ARHVRSGHSRLSFLGQYVLELAFAEFFL-QRYPRESPGPMRERVYALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEE 300
           SLQN++FPYD+MDK++R D                       +VYRVLFEVFGMDP++E+
Sbjct: 241 SLQNIVFPYDNMDKMLRTDREPPVKSVFWALFAAIYLCFGMPEVYRVLFEVFGMDPEAED 300

Query: 301 CEPRLRRQLEDVDYVSV------------------------------------------- 309
           C+P+LRRQLED+D VSV                                           
Sbjct: 301 CQPKLRRQLEDIDCVSVEFEGGNKLSWQDVATYKPPEDALFAHPRLFRACVPPGMHRFRG 360

[Close]
BLAST of Carg18562 vs. TrEMBL
Match: tr|A0A2P5D096|A0A2P5D096_PARAD (Ribonuclease III domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_107630 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 9.1e-103
Identity = 227/436 (52.06%), Postives = 260/436 (59.63%), Query Frame = 0 

Query: 1   MELSSSFVKL----SSS---TNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDP 60
           MELSS+F+ L    SSS    NYSF+SSF+ F V+  P +    NP   + RIFAVAVDP
Sbjct: 1   MELSSTFIHLPKPCSSSPTYNNYSFASSFSTFPVQFRPKNQKLTNPFPQSFRIFAVAVDP 60

Query: 61  QQELPKNNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSF 120
           QQELP+N+PQRLLKELAERK+ TSP KKVPPRR++LRPPLDDKKL +RFLNSPQL+LK+F
Sbjct: 61  QQELPQNSPQRLLKELAERKKVTSPTKKVPPRRFVLRPPLDDKKLTQRFLNSPQLSLKAF 120

Query: 121 PLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFV 180
           PLLSSCLPSSRLNNADKTW+DEYLLEAKQALGYPLEPSD        G  +  +     +
Sbjct: 121 PLLSSCLPSSRLNNADKTWIDEYLLEAKQALGYPLEPSD------RFGDDNPAKQFDTLL 180

Query: 181 F-----------GAIRARIGVSR-------------------RYPRESPGPMRKRVFALI 240
           +            A   R G SR                   RYPRESPGPMR+RVFALI
Sbjct: 181 YLAFQHPSCERTNARHVRSGHSRLCFLGQYVLELALAEYFLQRYPRESPGPMRERVFALI 240

Query: 241 GKRNLPKWIKAASLQNLIFPYDDMDKLIRKD-----------------------QVYRVL 300
           GKRNLPKWIKAAS QNLIFPYDDMDKL+RK+                       +VYRVL
Sbjct: 241 GKRNLPKWIKAASFQNLIFPYDDMDKLVRKEREPVVKSVFWALFGAIYLCFGVPEVYRVL 300

Query: 301 FEVFGMDPDSEECEPRLRRQLEDVDYVSVDCR---------------------------- 309
           FEVFGMDP++E+C+PRLRRQLEDVDYVSV+                              
Sbjct: 301 FEVFGMDPEAEDCQPRLRRQLEDVDYVSVEFEGNKLSWQDPPEDALFAHPRLFRACVPPG 360

The following BLAST results are available for this feature:
BLAST of Carg18562 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022963342.11.6e-12762.24LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplas... [more]
XP_023003680.19.8e-12561.48LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplas... [more]
XP_023518761.11.7e-12461.07LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplas... [more]
XP_004141878.12.3e-12159.35PREDICTED: uncharacterized protein LOC101207336 [Cucumis sativus] >KGN48593.1 hy... [more]
XP_008440359.13.0e-12160.00PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucum... [more]
BLAST of Carg18562 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G37510.18.7e-9150.00Ribonuclease III family protein[more]
BLAST of Carg18562 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SZV0|RNC1_ARATH1.6e-8950.00Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis th... [more]
sp|Q8S1Z0|RNC1_ORYSJ3.6e-7846.42Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa s... [more]
sp|A6YSL1|RNC1_MAIZE2.3e-7744.11Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=45... [more]
BLAST of Carg18562 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KGG7|A0A0A0KGG7_CUCSA1.5e-12159.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G494980 PE=4 SV=1[more]
tr|A0A1S3B1J9|A0A1S3B1J9_CUCME2.0e-12160.00ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo O... [more]
tr|A0A2P5FSK0|A0A2P5FSK0_9ROSA2.4e-10352.06Ribonuclease III domain containing protein OS=Trema orientalis OX=63057 GN=TorRG... [more]
tr|W9QX70|W9QX70_9ROSA7.0e-10351.86Ribonuclease 3 OS=Morus notabilis OX=981085 GN=L484_005920 PE=4 SV=1[more]
tr|A0A2P5D096|A0A2P5D096_PARAD9.1e-10352.06Ribonuclease III domain containing protein OS=Parasponia andersonii OX=3476 GN=P... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18562-RACarg18562-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18562Cla014011Watermelon (97103) v1carwmB0005
Carg18562Csa6G494980Cucumber (Chinese Long) v2carcuB0003
Carg18562MELO3C007616Melon (DHL92) v3.5.1carmeB0002
Carg18562ClCG01G017380Watermelon (Charleston Gray)carwcgB0002
Carg18562CSPI06G28720Wild cucumber (PI 183967)carcpiB0003
Carg18562Cucsa.103010Cucumber (Gy14) v1carcgyB0001
Carg18562CmaCh03G009360Cucurbita maxima (Rimu)carcmaB0003
Carg18562Lsi01G009130Bottle gourd (USVL1VR-Ls)carlsiB001
Carg18562Cp4.1LG19g10820Cucurbita pepo (Zucchini)carcpeB0002
Carg18562CsGy6G028200Cucumber (Gy14) v2carcgybB0003
Carg18562MELO3C007616.2Melon (DHL92) v3.6.1carmedB0003
Carg18562CsaV3_6G043910Cucumber (Chinese Long) v3carcucB0003
Carg18562Cla97C01G016550Watermelon (97103) v2carwmbB0002
Carg18562Bhi03G000771Wax gourdcarwgoB0003
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg18562Silver-seed gourdcarcarB001
Carg18562Cucumber (Gy14) v2carcgybB0001
Carg18562Cucumber (Gy14) v1carcgyB0003
Carg18562Cucurbita maxima (Rimu)carcmaB0002
Carg18562Cucurbita maxima (Rimu)carcmaB0004
Carg18562Cucurbita moschata (Rifu)carcmoB0004
Carg18562Cucurbita moschata (Rifu)carcmoB0005
Carg18562Cucurbita pepo (Zucchini)carcpeB0001
Carg18562Wild cucumber (PI 183967)carcpiB0001
Carg18562Cucumber (Chinese Long) v2carcuB0001
Carg18562Cucumber (Chinese Long) v3carcucB0001
Carg18562Bottle gourd (USVL1VR-Ls)carlsiB003
Carg18562Melon (DHL92) v3.5.1carmeB0001
Carg18562Melon (DHL92) v3.6.1carmedB0001
Carg18562Watermelon (Charleston Gray)carwcgB0003
Carg18562Watermelon (97103) v1carwmB0004
Carg18562Watermelon (97103) v2carwmbB0003
Carg18562Wax gourdcarwgoB0001