Carg18393 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18393
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cysteine desulfurase
Location	Cucurbita_argyrosperma_scaffold_161 : 11899 .. 12820 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATCGATACCATCCATCCAGACATCTTCGATTCTCTCAAGTTTGGGAACGAAAGGATGATGGAAGGTGTGGTTCTCAAGCTCCCATCCTTCCAATTCCAACTCCATTTCATAAACCCTAGTCGTTGCAGTTCCTGTTTCTCCTCCACTCTCCGCACTTCCTCTTCTCCTTCTCTGCGCTTCCGCTTCCGCAGATTTTCCTCTCCCTTCTCTGTTTCTGCTTCAGCTTCCACCGCTAGGGAAACGGACAACTTGCATCTTGGTTCTCTTTCGCTTGGCCACTCAACTCGACCTGATTTCCCCATCCTCCATCAGGTTCTTGTTTTTTATTATCGTTATTCTGTATGTTTTCTTTGGTGATTTGGCCGATTCCTCTTTTTTCATTAATCATAAACCCATTTCTCGTCTATTTGGTATTAGTTCCTTAAAGTTTGTGAATCTCGTTATATTTACTACCACTATTTAGTCTCAAGTGATTATTGTTGTAATCTATTGGCACTTGTGGTGTTAATGGCCGTGTTGCGATCCGCAGGAAGTAAATGGCTCCAAGCTTGTCTACTTGGACAATGCTGCCACCTCTCAGAAACCGATTGCCGTGTTGAAAGCCTTGCAGAATTATTATGAGGCTTACAATTCAAATGTTCATCGTGGCATACACTACTTGAGGTAGGTTGTTCATACTTTGGTATGAAACGTGAATTTAAACGATGTCTTGATCACTTGTAATCACGACCATTTGTGATTGTAGTGCGAAGGCAACGGACGAGTATGAGCTGGCAAGAAAGAAGGTTGCGTCTTTTATCAATGCTGGAGATGCTAGAGAGATCGTTTTTACTAGGAATGCAACTGAAGCTATCAATTTAGTGGCTTATTCTTGGGGCATAGCGAATTTAAAATCAGAAGATGAGGTGCGTATCGTGTAG

mRNA sequence

GCATCGATACCATCCATCCAGACATCTTCGATTCTCTCAAGTTTGGGAACGAAAGGATGATGGAAGGTGTGGTTCTCAAGCTCCCATCCTTCCAATTCCAACTCCATTTCATAAACCCTAGTCGTTGCAGTTCCTGTTTCTCCTCCACTCTCCGCACTTCCTCTTCTCCTTCTCTGCGCTTCCGCTTCCGCAGATTTTCCTCTCCCTTCTCTGTTTCTGCTTCAGCTTCCACCGCTAGGGAAACGGACAACTTGCATCTTGGTTCTCTTTCGCTTGGCCACTCAACTCGACCTGATTTCCCCATCCTCCATCAGGAAGTAAATGGCTCCAAGCTTGTCTACTTGGACAATGCTGCCACCTCTCAGAAACCGATTGCCGTGTTGAAAGCCTTGCAGAATTATTATGAGGCTTACAATTCAAATGTTCATCGTGGCATACACTACTTGAGTGCGAAGGCAACGGACGAGTATGAGCTGGCAAGAAAGAAGGTTGCGTCTTTTATCAATGCTGGAGATGCTAGAGAGATCGTTTTTACTAGGAATGCAACTGAAGCTATCAATTTAGTGGCTTATTCTTGGGGCATAGCGAATTTAAAATCAGAAGATGAGGTGCGTATCGTGTAG

Coding sequence (CDS)

ATGATGGAAGGTGTGGTTCTCAAGCTCCCATCCTTCCAATTCCAACTCCATTTCATAAACCCTAGTCGTTGCAGTTCCTGTTTCTCCTCCACTCTCCGCACTTCCTCTTCTCCTTCTCTGCGCTTCCGCTTCCGCAGATTTTCCTCTCCCTTCTCTGTTTCTGCTTCAGCTTCCACCGCTAGGGAAACGGACAACTTGCATCTTGGTTCTCTTTCGCTTGGCCACTCAACTCGACCTGATTTCCCCATCCTCCATCAGGAAGTAAATGGCTCCAAGCTTGTCTACTTGGACAATGCTGCCACCTCTCAGAAACCGATTGCCGTGTTGAAAGCCTTGCAGAATTATTATGAGGCTTACAATTCAAATGTTCATCGTGGCATACACTACTTGAGTGCGAAGGCAACGGACGAGTATGAGCTGGCAAGAAAGAAGGTTGCGTCTTTTATCAATGCTGGAGATGCTAGAGAGATCGTTTTTACTAGGAATGCAACTGAAGCTATCAATTTAGTGGCTTATTCTTGGGGCATAGCGAATTTAAAATCAGAAGATGAGGTGCGTATCGTGTAG

Protein sequence

MMEGVVLKLPSFQFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTARETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLKSEDEVRIV

Homology

[Close]

BLAST of Carg18393 vs. NCBI nr
Match: XP_022943969.1 (cysteine desulfurase 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 360.9 bits (925), Expect = 2.6e-96
Identity = 184/185 (99.46%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MMEGVVLKLPSFQFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTA 60
           MMEGVVLKLPSFQFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTA
Sbjct: 1   MMEGVVLKLPSFQFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTA 60

Query: 61  RETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN 120
           RETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN
Sbjct: 61  RETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN 120

Query: 121 SNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLK 180
           SNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLK
Sbjct: 121 SNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLK 180

Query: 181 SEDEV 186
           SEDE+
Sbjct: 181 SEDEI 185

[Close]

BLAST of Carg18393 vs. NCBI nr
Match: XP_022986219.1 (cysteine desulfurase 1, chloroplastic-like, partial [Cucurbita maxima])

HSP 1 Score: 357.1 bits (915), Expect = 3.7e-95
Identity = 181/185 (97.84%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MMEGVVLKLPSFQFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTA 60
           MMEGVVLKLPSFQFQ HF+NPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTA
Sbjct: 1   MMEGVVLKLPSFQFQFHFMNPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTA 60

Query: 61  RETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN 120
           RETDNLHLGSLSLGH+TRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN
Sbjct: 61  RETDNLHLGSLSLGHTTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN 120

Query: 121 SNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLK 180
           SNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLK
Sbjct: 121 SNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLK 180

Query: 181 SEDEV 186
           SEDE+
Sbjct: 181 SEDEI 185

[Close]

BLAST of Carg18393 vs. NCBI nr
Match: XP_023513282.1 (cysteine desulfurase 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 356.7 bits (914), Expect = 4.9e-95
Identity = 183/185 (98.92%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MMEGVVLKLPSFQFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTA 60
           MMEGVVLKLPSFQFQL FINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTA
Sbjct: 1   MMEGVVLKLPSFQFQLLFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTA 60

Query: 61  RETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN 120
           RETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN
Sbjct: 61  RETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN 120

Query: 121 SNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLK 180
           SNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLK
Sbjct: 121 SNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLK 180

Query: 181 SEDEV 186
           SEDE+
Sbjct: 181 SEDEI 185

[Close]

BLAST of Carg18393 vs. NCBI nr
Match: XP_008449615.1 (PREDICTED: cysteine desulfurase 1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 6.9e-81
Identity = 159/187 (85.03%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MMEGVVLKLPSF--QFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASAS 60
           MMEG+VLKLPSF  QFQ   +NP+RC SCFSSTLR SSSP LRF   RFSSP SVSASAS
Sbjct: 1   MMEGMVLKLPSFHSQFQFQLMNPNRCISCFSSTLRASSSPLLRFGNPRFSSPLSVSASAS 60

Query: 61  TARETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEA 120
           TA+ETD+LHL SLSLGH+TRPDFPILHQE+NGSKLVYLDNAATSQKPI+VL ALQNYYEA
Sbjct: 61  TAKETDSLHLNSLSLGHTTRPDFPILHQEINGSKLVYLDNAATSQKPISVLNALQNYYEA 120

Query: 121 YNSNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIAN 180
           YNSNVHRGIH LSAKATDEYE ARKKVASFINAGDA+EI+FTRNATEAINLVAYSWG+AN
Sbjct: 121 YNSNVHRGIHSLSAKATDEYERARKKVASFINAGDAKEIIFTRNATEAINLVAYSWGLAN 180

Query: 181 LKSEDEV 186
           LKSEDE+
Sbjct: 181 LKSEDEI 187

[Close]

BLAST of Carg18393 vs. NCBI nr
Match: XP_022153071.1 (cysteine desulfurase 1, chloroplastic [Momordica charantia])

HSP 1 Score: 306.2 bits (783), Expect = 7.6e-80
Identity = 161/185 (87.03%), Postives = 169/185 (91.35%), Query Frame = 0


Query: 1   MMEGVVLKLPSFQFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTA 60
           MME VVLKLPSFQ    FINPSRCSSCFSSTLR S S +L    RRFSSPFSVSASASTA
Sbjct: 1   MMEVVVLKLPSFQ----FINPSRCSSCFSSTLRNSPSSAL----RRFSSPFSVSASASTA 60

Query: 61  RETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN 120
            ETD+LH  SLSLGH+TRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN
Sbjct: 61  TETDSLHFASLSLGHTTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN 120

Query: 121 SNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLK 180
           SNVHRGIHYLSAKATDEYELARKKVASF+NA +AREI+FTRNATEAINLVAYSWG+ANLK
Sbjct: 121 SNVHRGIHYLSAKATDEYELARKKVASFVNAAEAREIIFTRNATEAINLVAYSWGLANLK 177

Query: 181 SEDEV 186
           SEDE+
Sbjct: 181 SEDEI 177

[Close]

BLAST of Carg18393 vs. TAIR10
Match: AT1G08490.1 (chloroplastic NIFS-like cysteine desulfurase)

HSP 1 Score: 208.4 bits (529), Expect = 3.9e-54
Identity = 119/184 (64.67%), Postives = 132/184 (71.74%), Query Frame = 0


Query: 2   MEGVVLKLPSFQFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTAR 61
           MEGV +KLPSF        P+  S    S  R            R SS  SV ++A+ + 
Sbjct: 1   MEGVAMKLPSF--------PNAISIGHRSFSRV-----------RCSSSLSVCSAAAASS 60

Query: 62  ETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYNS 121
            T +    S+SLGH  R DF ILHQEVNGSKLVYLD+AATSQKP AVL ALQNYYE YNS
Sbjct: 61  ATISTDSESVSLGHRVRKDFRILHQEVNGSKLVYLDSAATSQKPAAVLDALQNYYEFYNS 120

Query: 122 NVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLKS 181
           NVHRGIHYLSAKATDE+ELARKKVA FINA D+REIVFTRNATEAINLVAYSWG++NLK 
Sbjct: 121 NVHRGIHYLSAKATDEFELARKKVARFINASDSREIVFTRNATEAINLVAYSWGLSNLKP 165

Query: 182 EDEV 186
            DEV
Sbjct: 181 GDEV 165

[Close]

BLAST of Carg18393 vs. Swiss-Prot
Match: sp|Q93WX6|CNIF1_ARATH (Cysteine desulfurase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NFS2 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 7.0e-53
Identity = 119/184 (64.67%), Postives = 132/184 (71.74%), Query Frame = 0


Query: 2   MEGVVLKLPSFQFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTAR 61
           MEGV +KLPSF        P+  S    S  R            R SS  SV ++A+ + 
Sbjct: 1   MEGVAMKLPSF--------PNAISIGHRSFSRV-----------RCSSSLSVCSAAAASS 60

Query: 62  ETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYNS 121
            T +    S+SLGH  R DF ILHQEVNGSKLVYLD+AATSQKP AVL ALQNYYE YNS
Sbjct: 61  ATISTDSESVSLGHRVRKDFRILHQEVNGSKLVYLDSAATSQKPAAVLDALQNYYEFYNS 120

Query: 122 NVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLKS 181
           NVHRGIHYLSAKATDE+ELARKKVA FINA D+REIVFTRNATEAINLVAYSWG++NLK 
Sbjct: 121 NVHRGIHYLSAKATDEFELARKKVARFINASDSREIVFTRNATEAINLVAYSWGLSNLKP 165

Query: 182 EDEV 186
            DEV
Sbjct: 181 GDEV 165

[Close]

BLAST of Carg18393 vs. Swiss-Prot
Match: sp|Q55793|CSD_SYNY3 (Probable cysteine desulfurase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=csd PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.4e-38
Identity = 79/114 (69.30%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 72  SLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHYLS 131
           SL  + R DFPIL+QE+NG  LVYLDNAATSQKP AVL+ L +YYE  N+NVHRG H LS
Sbjct: 8   SLAATVRQDFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLS 67

Query: 132 AKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLKSEDEV 186
            +ATD YE  R KVA FINA   REIV+TRNATEAINLVAYSWG+ NLK+ DE+
Sbjct: 68  VRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEI 121

[Close]

BLAST of Carg18393 vs. Swiss-Prot
Match: sp|Q9K7A0|CSD_BACHD (Probable cysteine desulfurase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=csd PE=3 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 6.8e-32
Identity = 70/113 (61.95%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 75  HSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHYLSAKA 134
           H  +  FP+L QEVNGS LVYLD+AATSQKPIAV++AL +YY  YNSNVHRG+H L   A
Sbjct: 4   HEIKKLFPVLDQEVNGSPLVYLDSAATSQKPIAVIEALDDYYRRYNSNVHRGVHTLGTLA 63

Query: 135 TDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLKSEDEVRI 188
           TD YE AR+K+  FI+A    EI+FTR  T AINLVA S+G ANL   DE+ I
Sbjct: 64  TDGYEGAREKIRRFIHASSTEEIIFTRGTTTAINLVAASYGRANLGEGDEIVI 116

[Close]

BLAST of Carg18393 vs. Swiss-Prot
Match: sp|O32164|SUFS_BACSU (Cysteine desulfurase SufS OS=Bacillus subtilis (strain 168) OX=224308 GN=sufS PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.3e-30
Identity = 67/110 (60.91%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 78  RPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHYLSAKATDE 137
           R  FPILHQ+VNG  LVYLD+AATSQKP AV++ L  YY  YNSNVHRG+H L  +ATD 
Sbjct: 7   REQFPILHQQVNGHDLVYLDSAATSQKPRAVIETLDKYYNQYNSNVHRGVHTLGTRATDG 66

Query: 138 YELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLKSEDEVRI 188
           YE AR+KV  FINA    EI+FT+  T ++N+VA S+  ANLK  DEV I
Sbjct: 67  YEGAREKVRKFINAKSMAEIIFTKGTTTSLNMVALSYARANLKPGDEVVI 116

[Close]

BLAST of Carg18393 vs. Swiss-Prot
Match: sp|Q5HHH0|CSD_STAAC (Probable cysteine desulfurase OS=Staphylococcus aureus (strain COL) OX=93062 GN=csd PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.3e-29
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 80  DFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHYLSAKATDEYE 139
           DFPIL Q+VNG +L YLD+ ATSQ P+ VL  L++YY+ YNSNVHRG+H L + ATD YE
Sbjct: 14  DFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYE 73

Query: 140 LARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLKSEDEV 186
            AR+ V  FINA    EI+FTR  T +INLVA+S+G AN++  DE+
Sbjct: 74  NARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEI 119

[Close]

BLAST of Carg18393 vs. TrEMBL
Match: tr|A0A1S3BLT6|A0A1S3BLT6_CUCME (cysteine desulfurase 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103491447 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 4.5e-81
Identity = 159/187 (85.03%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MMEGVVLKLPSF--QFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASAS 60
           MMEG+VLKLPSF  QFQ   +NP+RC SCFSSTLR SSSP LRF   RFSSP SVSASAS
Sbjct: 1   MMEGMVLKLPSFHSQFQFQLMNPNRCISCFSSTLRASSSPLLRFGNPRFSSPLSVSASAS 60

Query: 61  TARETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEA 120
           TA+ETD+LHL SLSLGH+TRPDFPILHQE+NGSKLVYLDNAATSQKPI+VL ALQNYYEA
Sbjct: 61  TAKETDSLHLNSLSLGHTTRPDFPILHQEINGSKLVYLDNAATSQKPISVLNALQNYYEA 120

Query: 121 YNSNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIAN 180
           YNSNVHRGIH LSAKATDEYE ARKKVASFINAGDA+EI+FTRNATEAINLVAYSWG+AN
Sbjct: 121 YNSNVHRGIHSLSAKATDEYERARKKVASFINAGDAKEIIFTRNATEAINLVAYSWGLAN 180

Query: 181 LKSEDEV 186
           LKSEDE+
Sbjct: 181 LKSEDEI 187

[Close]

BLAST of Carg18393 vs. TrEMBL
Match: tr|A0A0A0KEG9|A0A0A0KEG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G427980 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.5e-79
Identity = 157/187 (83.96%), Postives = 169/187 (90.37%), Query Frame = 0


Query: 1   MMEGVVLKLPSF--QFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASAS 60
           MMEG+VLK PSF  QF   F+NP+RC SCFSSTLR SSSP LRFR  R  S FSVSASAS
Sbjct: 30  MMEGMVLKSPSFHSQFHFQFMNPNRCISCFSSTLRASSSPLLRFRNPRLPSHFSVSASAS 89

Query: 61  TARETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEA 120
           TA+ETD+LHL SLSLGH+TRPDFPILHQEVNGSKLVYLDNAATSQKPI+VL ALQNYY+A
Sbjct: 90  TAKETDSLHLNSLSLGHTTRPDFPILHQEVNGSKLVYLDNAATSQKPISVLNALQNYYQA 149

Query: 121 YNSNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIAN 180
           YNSNVHRGIH+LSAKATDEYE ARKKVASFINAGDA+EIVFTRNATEAINLVAYSWG+AN
Sbjct: 150 YNSNVHRGIHFLSAKATDEYERARKKVASFINAGDAKEIVFTRNATEAINLVAYSWGLAN 209

Query: 181 LKSEDEV 186
           LKS DE+
Sbjct: 210 LKSGDEI 216

[Close]

BLAST of Carg18393 vs. TrEMBL
Match: tr|A0A067KRV2|A0A067KRV2_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11109 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.4e-58
Identity = 133/189 (70.37%), Postives = 147/189 (77.78%), Query Frame = 0


Query: 2   MEGVVLKLPSFQFQLHFINPSRCSSCFSSTLRTSSSP-SLRFRFRRFSSPFS----VSAS 61
           M+G V KLPSF+    F+ P+      SS   T+ SP  +R    R SS +S    + A 
Sbjct: 1   MDGAVFKLPSFK----FLRPN------SSPPATTKSPVVIRCGLTRLSSSYSSSSAIQAI 60

Query: 62  ASTARETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYY 121
           A+T RE D   LGSLSLGH TRPDFPILHQEVNGSKLVYLDNAATSQKP +VL+ALQNYY
Sbjct: 61  ATTGREGDQA-LGSLSLGHITRPDFPILHQEVNGSKLVYLDNAATSQKPNSVLRALQNYY 120

Query: 122 EAYNSNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGI 181
           E YNSNVHRGIHYLSAKATDEYELARKKVA+FINA D+REIVFTRNATEAINLVAYSWG+
Sbjct: 121 ETYNSNVHRGIHYLSAKATDEYELARKKVAAFINASDSREIVFTRNATEAINLVAYSWGL 178

Query: 182 ANLKSEDEV 186
           ANLK  DEV
Sbjct: 181 ANLKPGDEV 178

[Close]

BLAST of Carg18393 vs. TrEMBL
Match: tr|A0A2P4JQZ1|A0A2P4JQZ1_QUESU (Cysteine desulfurase 1, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_42726 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.1e-58
Identity = 128/185 (69.19%), Postives = 141/185 (76.22%), Query Frame = 0


Query: 1   MMEGVVLKLPSFQFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTA 60
           +ME VV KLPSF+     +NP+                   FR       FS+SASAS  
Sbjct: 16  IMETVVHKLPSFK----LLNPTXXXXXXXXXXXXXXXXXXSFRVGSRRRSFSISASASAV 75

Query: 61  RETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN 120
           RE DN  LGS+SLGH TRPDFPILHQEVNGS+LVYLDNAATS KP AVL ALQNYYEAYN
Sbjct: 76  RE-DNPALGSVSLGHITRPDFPILHQEVNGSRLVYLDNAATSHKPTAVLNALQNYYEAYN 135

Query: 121 SNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLK 180
           SNVHRGIHYLSA+ATDEYELARKKVA+FINA D+REIVFT+NATEAINLVAYSWG++NLK
Sbjct: 136 SNVHRGIHYLSARATDEYELARKKVAAFINASDSREIVFTKNATEAINLVAYSWGLSNLK 195

Query: 181 SEDEV 186
            EDEV
Sbjct: 196 PEDEV 195

[Close]

BLAST of Carg18393 vs. TrEMBL
Match: tr|B9SB60|B9SB60_RICCO (Cysteine desulfurylase, putative OS=Ricinus communis OX=3988 GN=RCOM_0785100 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.7e-57
Identity = 129/185 (69.73%), Postives = 141/185 (76.22%), Query Frame = 0


Query: 1   MMEGVVLKLPSFQFQLHFINPSRCSSCFSSTLRTSSSPSLRFRFRRFSSPFSVSASASTA 60
           MM+GVV KLPS    +  +NP            T SSP    R  +FSS F++ A A+T 
Sbjct: 4   MMDGVVFKLPS----IKLLNPKS---------TTHSSP---IRLAKFSS-FAIPALATTG 63

Query: 61  RETDNLHLGSLSLGHSTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYEAYN 120
            E D     SLSLGH TRPDFPILHQEVNGSKLVYLDNAATSQKP +VLKA+QNYYE+YN
Sbjct: 64  TEGDQALHASLSLGHITRPDFPILHQEVNGSKLVYLDNAATSQKPNSVLKAIQNYYESYN 123

Query: 121 SNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTRNATEAINLVAYSWGIANLK 180
           SNVHRGIHYLSAKATDEYELARKKVA+FINA D+REIVFTRNATEAINLVAYSWG  NLK
Sbjct: 124 SNVHRGIHYLSAKATDEYELARKKVAAFINASDSREIVFTRNATEAINLVAYSWGFTNLK 171

Query: 181 SEDEV 186
             DEV
Sbjct: 184 PGDEV 171

The following BLAST results are available for this feature:

BLAST of Carg18393 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943969.1	2.6e-96	99.46	cysteine desulfurase 1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022986219.1	3.7e-95	97.84	cysteine desulfurase 1, chloroplastic-like, partial [Cucurbita maxima]	[more]
XP_023513282.1	4.9e-95	98.92	cysteine desulfurase 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_008449615.1	6.9e-81	85.03	PREDICTED: cysteine desulfurase 1, chloroplastic-like [Cucumis melo]	[more]
XP_022153071.1	7.6e-80	87.03	cysteine desulfurase 1, chloroplastic [Momordica charantia]	[more]

BLAST of Carg18393 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08490.1	3.9e-54	64.67	chloroplastic NIFS-like cysteine desulfurase	[more]

BLAST of Carg18393 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93WX6\|CNIF1_ARATH	7.0e-53	64.67	Cysteine desulfurase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NFS2 PE...	[more]
sp\|Q55793\|CSD_SYNY3	8.4e-38	69.30	Probable cysteine desulfurase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX...	[more]
sp\|Q9K7A0\|CSD_BACHD	6.8e-32	61.95	Probable cysteine desulfurase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM ...	[more]
sp\|O32164\|SUFS_BACSU	1.3e-30	60.91	Cysteine desulfurase SufS OS=Bacillus subtilis (strain 168) OX=224308 GN=sufS PE...	[more]
sp\|Q5HHH0\|CSD_STAAC	9.3e-29	58.49	Probable cysteine desulfurase OS=Staphylococcus aureus (strain COL) OX=93062 GN=...	[more]

BLAST of Carg18393 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BLT6\|A0A1S3BLT6_CUCME	4.5e-81	85.03	cysteine desulfurase 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1034914...	[more]
tr\|A0A0A0KEG9\|A0A0A0KEG9_CUCSA	2.5e-79	83.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G427980 PE=4 SV=1	[more]
tr\|A0A067KRV2\|A0A067KRV2_JATCU	2.4e-58	70.37	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11109 PE=4 SV=1	[more]
tr\|A0A2P4JQZ1\|A0A2P4JQZ1_QUESU	4.1e-58	69.19	Cysteine desulfurase 1, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_42726 P...	[more]
tr\|B9SB60\|B9SB60_RICCO	2.7e-57	69.73	Cysteine desulfurylase, putative OS=Ricinus communis OX=3988 GN=RCOM_0785100 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR015424	PyrdxlP-dep_Trfase
IPR015421	PyrdxlP-dep_Trfase_major
IPR000192	Aminotrans_V_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18393-RA	Carg18393-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000192	Aminotransferase class V domain	PFAM	PF00266	Aminotran_5	coord: 94..185 e-value: 9.0E-32 score: 110.3
IPR015421	Pyridoxal phosphate-dependent transferase, major domain	GENE3D	G3DSA:3.40.640.10		coord: 105..188 e-value: 5.4E-29 score: 102.9
None	No IPR available	PANTHER	PTHR43586	FAMILY NOT NAMED	coord: 28..185
None	No IPR available	PANTHER	PTHR43586:SF12	CYSTEINE DESULFURASE 1, CHLOROPLASTIC	coord: 28..185
IPR015424	Pyridoxal phosphate-dependent transferase	SUPERFAMILY	SSF53383	PLP-dependent transferases	coord: 77..185

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18393	CmaCh20G001350	Cucurbita maxima (Rimu)	carcmaB0575

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18393	Silver-seed gourd	carcarB433
Carg18393	Cucumber (Gy14) v2	carcgybB0421
Carg18393	Cucumber (Gy14) v1	carcgyB0478
Carg18393	Cucurbita maxima (Rimu)	carcmaB0576
Carg18393	Cucurbita moschata (Rifu)	carcmoB0559
Carg18393	Cucurbita moschata (Rifu)	carcmoB0560
Carg18393	Cucurbita pepo (Zucchini)	carcpeB0579
Carg18393	Cucurbita pepo (Zucchini)	carcpeB0583
Carg18393	Wild cucumber (PI 183967)	carcpiB0450
Carg18393	Cucumber (Chinese Long) v2	carcuB0445
Carg18393	Cucumber (Chinese Long) v3	carcucB0446
Carg18393	Bottle gourd (USVL1VR-Ls)	carlsiB375
Carg18393	Melon (DHL92) v3.5.1	carmeB0423
Carg18393	Melon (DHL92) v3.6.1	carmedB0426
Carg18393	Watermelon (Charleston Gray)	carwcgB0409
Carg18393	Watermelon (97103) v1	carwmB0413
Carg18393	Watermelon (97103) v2	carwmbB0439
Carg18393	Wax gourd	carwgoB0501