Carg18312 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18312
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
Location	Cucurbita_argyrosperma_scaffold_106 : 30149 .. 30874 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATAGAGAGAAGAAGAACAATAACAATAACAAGAAACAAAAGCATCGCCACCAATCAGGCGGCACCACCGCCAATCTAGCGCTTACCGATTTCTCCTTCAAGCCATCTACCGCTGTCAAAGGTCTCCGATTCGGTGCCCAATTCGTTGTCAAATCCTTCACAATTCGCCGAGCCTGGCCTCTTGAATTCCTCCAGCTACTTTCTCTGCCGCCGCACCACGACGGCAATACCGACAGCGACAATAACAACCAAAATCGCCTTCCGTTCAATTCCACTGCCGTGTTCCTGCCGACGAATTTCACGATTCTGGCGCACCACGCTTGGCACAATCTGACGCTCGGCCTCGGCACGAAGAAATCGAAGGTGATTCTGTTTGTGTTCGAGACGGAGGCTTTGAAGGCTGCCGTCGGCCACAGGTGGCCGGCGGAAATGACTCTCGGCGATGTGAATCGACGGCTGATTCGGGGACTGAGCGGCTGTGAGATGGCTAGGTTTAAATTTAGAAAAGGTTGTTTAACTTTTTACGTGTATGCTGTCCGCGAAAGAGGATGCTTCGGATTCTCCGCCGCCGATGATTTGAAACGGATTTTGCAGGCCGTTATTGCGCTGAATGATTTTTTGGACTACACCGCCATGCTCGCGTTGCCGCATCAGAGAACTATCAGTTACGGCGGTGCCGGTAGCAGATTTAAGCCGCCGCCGGTTACCGTTGTTCATTGA

mRNA sequence

ATGGAAAATAGAGAGAAGAAGAACAATAACAATAACAAGAAACAAAAGCATCGCCACCAATCAGGCGGCACCACCGCCAATCTAGCGCTTACCGATTTCTCCTTCAAGCCATCTACCGCTGTCAAAGGTCTCCGATTCGGTGCCCAATTCGTTGTCAAATCCTTCACAATTCGCCGAGCCTGGCCTCTTGAATTCCTCCAGCTACTTTCTCTGCCGCCGCACCACGACGGCAATACCGACAGCGACAATAACAACCAAAATCGCCTTCCGTTCAATTCCACTGCCGTGTTCCTGCCGACGAATTTCACGATTCTGGCGCACCACGCTTGGCACAATCTGACGCTCGGCCTCGGCACGAAGAAATCGAAGGTGATTCTGTTTGTGTTCGAGACGGAGGCTTTGAAGGCTGCCGTCGGCCACAGGTGGCCGGCGGAAATGACTCTCGGCGATGTGAATCGACGGCTGATTCGGGGACTGAGCGGCTGTGAGATGGCTAGGTTTAAATTTAGAAAAGGTTGTTTAACTTTTTACGTGTATGCTGTCCGCGAAAGAGGATGCTTCGGATTCTCCGCCGCCGATGATTTGAAACGGATTTTGCAGGCCGTTATTGCGCTGAATGATTTTTTGGACTACACCGCCATGCTCGCGTTGCCGCATCAGAGAACTATCAGTTACGGCGGTGCCGGTAGCAGATTTAAGCCGCCGCCGGTTACCGTTGTTCATTGA

Coding sequence (CDS)

ATGGAAAATAGAGAGAAGAAGAACAATAACAATAACAAGAAACAAAAGCATCGCCACCAATCAGGCGGCACCACCGCCAATCTAGCGCTTACCGATTTCTCCTTCAAGCCATCTACCGCTGTCAAAGGTCTCCGATTCGGTGCCCAATTCGTTGTCAAATCCTTCACAATTCGCCGAGCCTGGCCTCTTGAATTCCTCCAGCTACTTTCTCTGCCGCCGCACCACGACGGCAATACCGACAGCGACAATAACAACCAAAATCGCCTTCCGTTCAATTCCACTGCCGTGTTCCTGCCGACGAATTTCACGATTCTGGCGCACCACGCTTGGCACAATCTGACGCTCGGCCTCGGCACGAAGAAATCGAAGGTGATTCTGTTTGTGTTCGAGACGGAGGCTTTGAAGGCTGCCGTCGGCCACAGGTGGCCGGCGGAAATGACTCTCGGCGATGTGAATCGACGGCTGATTCGGGGACTGAGCGGCTGTGAGATGGCTAGGTTTAAATTTAGAAAAGGTTGTTTAACTTTTTACGTGTATGCTGTCCGCGAAAGAGGATGCTTCGGATTCTCCGCCGCCGATGATTTGAAACGGATTTTGCAGGCCGTTATTGCGCTGAATGATTTTTTGGACTACACCGCCATGCTCGCGTTGCCGCATCAGAGAACTATCAGTTACGGCGGTGCCGGTAGCAGATTTAAGCCGCCGCCGGTTACCGTTGTTCATTGA

Protein sequence

MENREKKNNNNNKKQKHRHQSGGTTANLALTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNNQNRLPFNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAEMTLGDVNRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIALNDFLDYTAMLALPHQRTISYGGAGSRFKPPPVTVVH

Homology

[Close]

BLAST of Carg18312 vs. NCBI nr
Match: XP_022942622.1 (uncharacterized protein LOC111447604 [Cucurbita moschata])

HSP 1 Score: 444.1 bits (1141), Expect = 3.0e-121
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 0


Query: 26  ANLALTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNN 85
           AN ALTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNN
Sbjct: 26  ANPALTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNN 85

Query: 86  QNRLPFNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAE 145
           QNRLPFNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAE
Sbjct: 86  QNRLPFNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAE 145

Query: 146 MTLGDVNRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIAL 205
           MTLGDVNRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIAL
Sbjct: 146 MTLGDVNRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIAL 205

Query: 206 NDFLDYTAMLALPHQRTISYGGAGSRFKPPPVTVVH 242
           NDFLDYTAMLALPHQRTISYGGAGSRFKPPPVTVVH
Sbjct: 206 NDFLDYTAMLALPHQRTISYGGAGSRFKPPPVTVVH 241

[Close]

BLAST of Carg18312 vs. NCBI nr
Match: XP_023515552.1 (uncharacterized protein LOC111779673 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 442.6 bits (1137), Expect = 8.7e-121
Identity = 214/216 (99.07%), Postives = 215/216 (99.54%), Query Frame = 0


Query: 26  ANLALTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNN 85
           AN ALTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNN
Sbjct: 26  ANPALTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNN 85

Query: 86  QNRLPFNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAE 145
           QNRLPFNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAE
Sbjct: 86  QNRLPFNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAE 145

Query: 146 MTLGDVNRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIAL 205
           MTLGDVNRRLIRGLSGCEMARF+FRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIAL
Sbjct: 146 MTLGDVNRRLIRGLSGCEMARFEFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIAL 205

Query: 206 NDFLDYTAMLALPHQRTISYGGAGSRFKPPPVTVVH 242
           NDFLDYTAMLALPHQRTISYGGAGSRFKPPPVTVVH
Sbjct: 206 NDFLDYTAMLALPHQRTISYGGAGSRFKPPPVTVVH 241

[Close]

BLAST of Carg18312 vs. NCBI nr
Match: XP_022984473.1 (uncharacterized protein LOC111482763 [Cucurbita maxima])

HSP 1 Score: 428.7 bits (1101), Expect = 1.3e-116
Identity = 209/216 (96.76%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 26  ANLALTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNN 85
           AN  LTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGN  SDNNN
Sbjct: 55  ANPTLTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGN--SDNNN 114

Query: 86  QNRLPFNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAE 145
           QNRLPFNSTAVFLPTNFTILAHHAWHNLT GLGTKKSKVILFVFETEALKAAVGHRWPAE
Sbjct: 115 QNRLPFNSTAVFLPTNFTILAHHAWHNLTFGLGTKKSKVILFVFETEALKAAVGHRWPAE 174

Query: 146 MTLGDVNRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIAL 205
           MTLGDVNRRLIRGL+GCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIAL
Sbjct: 175 MTLGDVNRRLIRGLNGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIAL 234

Query: 206 NDFLDYTAMLALPHQRTISYGGAGSRFKPPPVTVVH 242
           NDFLDYTAMLALPHQR ISYGGAGSRFKPPPVTVVH
Sbjct: 235 NDFLDYTAMLALPHQRNISYGGAGSRFKPPPVTVVH 268

[Close]

BLAST of Carg18312 vs. NCBI nr
Match: XP_008461660.1 (PREDICTED: uncharacterized protein LOC103500208 [Cucumis melo])

HSP 1 Score: 358.6 bits (919), Expect = 1.7e-95
Identity = 173/215 (80.47%), Postives = 187/215 (86.98%), Query Frame = 0


Query: 27  NLALTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNNQ 86
           N +L+D+SFKPSTAVKGLRFG QFVVKSFTIRRAWPLEFLQLLSLPP +DG    D+   
Sbjct: 25  NPSLSDYSFKPSTAVKGLRFGGQFVVKSFTIRRAWPLEFLQLLSLPPRYDGGIHDDDGGN 84

Query: 87  NRLPFNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAEM 146
            RLPFNST  F+PTNFTILAHHAWH LTLGLGTKKSK ILFVF TEALKAA G  WPAE+
Sbjct: 85  KRLPFNSTVAFVPTNFTILAHHAWHTLTLGLGTKKSKAILFVFATEALKAAAGRVWPAEI 144

Query: 147 TLGDVNRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIALN 206
            LGDVNRRLIRGLSGCEMARFKFRKGCLTFY+YAVRE+GCFGFSAADDLK ILQAV++LN
Sbjct: 145 ALGDVNRRLIRGLSGCEMARFKFRKGCLTFYIYAVREKGCFGFSAADDLKTILQAVVSLN 204

Query: 207 DFLDYTAMLALPHQRTISYGGAGSRFKPPPVTVVH 242
           DFLD+TAMLALP+QR I+YGG GS F   PV VVH
Sbjct: 205 DFLDHTAMLALPNQRNITYGG-GSSFTTAPVAVVH 238

[Close]

BLAST of Carg18312 vs. NCBI nr
Match: XP_004147694.1 (PREDICTED: uncharacterized protein LOC101221084 [Cucumis sativus] >KGN50542.1 hypothetical protein Csa_5G181490 [Cucumis sativus])

HSP 1 Score: 344.4 bits (882), Expect = 3.2e-91
Identity = 169/215 (78.60%), Postives = 182/215 (84.65%), Query Frame = 0


Query: 27  NLALTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNNQ 86
           N  L+D+SFKPS AVKGLRFG QFVVKSFTIRR WPLEFLQLLSLPP +D     D++  
Sbjct: 25  NPPLSDYSFKPSAAVKGLRFGGQFVVKSFTIRRVWPLEFLQLLSLPPRYD-----DDDCN 84

Query: 87  NRLPFNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAEM 146
            R PFNSTA FLPTNFTILAHHAW+ LTLGLGTKKSK ILFVF TEALKAA G  WPAE+
Sbjct: 85  KRPPFNSTAAFLPTNFTILAHHAWNTLTLGLGTKKSKAILFVFATEALKAAAGRVWPAEI 144

Query: 147 TLGDVNRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIALN 206
             GDVNRRLIRGLSGCEMARFKFRKGCLTFY+YAVRE+GCFGFSAADDLK ILQAV++LN
Sbjct: 145 AFGDVNRRLIRGLSGCEMARFKFRKGCLTFYIYAVREKGCFGFSAADDLKTILQAVVSLN 204

Query: 207 DFLDYTAMLALPHQRTISYGGAGSRFKPPPVTVVH 242
           DFLD+TAMLALP+QR ISY G GS F   PV VVH
Sbjct: 205 DFLDHTAMLALPNQRNISYSGGGSSFTTAPVGVVH 234

[Close]

BLAST of Carg18312 vs. TAIR10
Match: AT3G55420.1 (unknown protein)

HSP 1 Score: 252.7 bits (644), Expect = 2.3e-67
Identity = 129/215 (60.00%), Postives = 157/215 (73.02%), Query Frame = 0


Query: 31  TDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNNQNRLP 90
           +D SFKPS+ VKGL+FG Q +VKSFTIRRA   E L+LLSLP            + +  P
Sbjct: 20  SDISFKPSSDVKGLKFGGQIIVKSFTIRRARTFELLKLLSLP------------SSSSPP 79

Query: 91  FNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALK----AAVGHRWPAEM 150
             STA +LPTNFTILAHHAWH LTLGLGT+KSKV++FVFETEA+K    AA G  WP+E+
Sbjct: 80  LLSTAAYLPTNFTILAHHAWHTLTLGLGTRKSKVVVFVFETEAMKSSVVAAEGGIWPSEI 139

Query: 151 TLGDVNRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIALN 210
            LGDVN+++IR L   EMARFKFRKGC+TFYVYAVR  G  GF+AA+DLK ILQAV+AL 
Sbjct: 140 PLGDVNKKMIRKLKNWEMARFKFRKGCITFYVYAVRNAGNEGFAAAEDLKVILQAVVALK 199

Query: 211 DFLDYTAMLALPHQRTISYGGAGSRFKPPPVTVVH 242
           DF+D+TAML +PHQ++I+Y         PP  + H
Sbjct: 200 DFMDHTAMLVMPHQKSINYSSC------PPFAMAH 216

[Close]

BLAST of Carg18312 vs. TrEMBL
Match: tr|A0A1S3CF88|A0A1S3CF88_CUCME (uncharacterized protein LOC103500208 OS=Cucumis melo OX=3656 GN=LOC103500208 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.1e-95
Identity = 173/215 (80.47%), Postives = 187/215 (86.98%), Query Frame = 0


Query: 27  NLALTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNNQ 86
           N +L+D+SFKPSTAVKGLRFG QFVVKSFTIRRAWPLEFLQLLSLPP +DG    D+   
Sbjct: 25  NPSLSDYSFKPSTAVKGLRFGGQFVVKSFTIRRAWPLEFLQLLSLPPRYDGGIHDDDGGN 84

Query: 87  NRLPFNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAEM 146
            RLPFNST  F+PTNFTILAHHAWH LTLGLGTKKSK ILFVF TEALKAA G  WPAE+
Sbjct: 85  KRLPFNSTVAFVPTNFTILAHHAWHTLTLGLGTKKSKAILFVFATEALKAAAGRVWPAEI 144

Query: 147 TLGDVNRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIALN 206
            LGDVNRRLIRGLSGCEMARFKFRKGCLTFY+YAVRE+GCFGFSAADDLK ILQAV++LN
Sbjct: 145 ALGDVNRRLIRGLSGCEMARFKFRKGCLTFYIYAVREKGCFGFSAADDLKTILQAVVSLN 204

Query: 207 DFLDYTAMLALPHQRTISYGGAGSRFKPPPVTVVH 242
           DFLD+TAMLALP+QR I+YGG GS F   PV VVH
Sbjct: 205 DFLDHTAMLALPNQRNITYGG-GSSFTTAPVAVVH 238

[Close]

BLAST of Carg18312 vs. TrEMBL
Match: tr|A0A0A0KQ89|A0A0A0KQ89_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G181490 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 2.1e-91
Identity = 169/215 (78.60%), Postives = 182/215 (84.65%), Query Frame = 0


Query: 27  NLALTDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNNQ 86
           N  L+D+SFKPS AVKGLRFG QFVVKSFTIRR WPLEFLQLLSLPP +D     D++  
Sbjct: 25  NPPLSDYSFKPSAAVKGLRFGGQFVVKSFTIRRVWPLEFLQLLSLPPRYD-----DDDCN 84

Query: 87  NRLPFNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAEM 146
            R PFNSTA FLPTNFTILAHHAW+ LTLGLGTKKSK ILFVF TEALKAA G  WPAE+
Sbjct: 85  KRPPFNSTAAFLPTNFTILAHHAWNTLTLGLGTKKSKAILFVFATEALKAAAGRVWPAEI 144

Query: 147 TLGDVNRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIALN 206
             GDVNRRLIRGLSGCEMARFKFRKGCLTFY+YAVRE+GCFGFSAADDLK ILQAV++LN
Sbjct: 145 AFGDVNRRLIRGLSGCEMARFKFRKGCLTFYIYAVREKGCFGFSAADDLKTILQAVVSLN 204

Query: 207 DFLDYTAMLALPHQRTISYGGAGSRFKPPPVTVVH 242
           DFLD+TAMLALP+QR ISY G GS F   PV VVH
Sbjct: 205 DFLDHTAMLALPNQRNISYSGGGSSFTTAPVGVVH 234

[Close]

BLAST of Carg18312 vs. TrEMBL
Match: tr|A0A2I4E4V5|A0A2I4E4V5_9ROSI (uncharacterized protein LOC108986302 OS=Juglans regia OX=51240 GN=LOC108986302 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 4.2e-79
Identity = 148/211 (70.14%), Postives = 169/211 (80.09%), Query Frame = 0


Query: 31  TDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNNQNRLP 90
           +DFSFKPS+ VKGLRFG QF+VKSFTIRRA PLE LQLLS PP         NNN N+LP
Sbjct: 26  SDFSFKPSSDVKGLRFGGQFIVKSFTIRRARPLELLQLLSFPP----TNPKPNNNNNKLP 85

Query: 91  FNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAEMTLGD 150
           F ST  FLPTNFTILAHHAWH LTLGLGTKKSKV+LFVFE+E +K A    WP+E+ LG 
Sbjct: 86  FPSTTAFLPTNFTILAHHAWHTLTLGLGTKKSKVLLFVFESEIMKTATDRVWPSEIPLGQ 145

Query: 151 VNRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIALNDFLD 210
           VN+RLIRGL+GCEMARFKFRKGC+TFYVYAVR+ GCFGFS ADDL+ ILQ+V+AL DFLD
Sbjct: 146 VNKRLIRGLTGCEMARFKFRKGCITFYVYAVRQVGCFGFSCADDLRTILQSVVALKDFLD 205

Query: 211 YTAMLALPHQRTISYGGAGSRFKPPPVTVVH 242
           +TAMLA+P+QR+ISY         PPV + H
Sbjct: 206 HTAMLAMPNQRSISYA--------PPVAMAH 224

[Close]

BLAST of Carg18312 vs. TrEMBL
Match: tr|M5XKJ1|M5XKJ1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G235300 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 6.0e-78
Identity = 148/210 (70.48%), Postives = 170/210 (80.95%), Query Frame = 0


Query: 32  DFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNNQNRLPF 91
           DFSFKPS+ VKGLRFG QF+VKSFTIRRA PLE LQLLSLPP       +  N+ N+LPF
Sbjct: 31  DFSFKPSSEVKGLRFGGQFIVKSFTIRRARPLELLQLLSLPP------PNKPNSNNKLPF 90

Query: 92  NSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAEMTLGDV 151
            ST  FLPTNFTILAHHAWH LTLGLGTKKSKV+LFVFETEA+KAAV   WP E+ LG+V
Sbjct: 91  PSTTAFLPTNFTILAHHAWHTLTLGLGTKKSKVVLFVFETEAMKAAVDRVWPPEIPLGEV 150

Query: 152 NRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIALNDFLDY 211
           N+RLIRGL+GCE+ARFKFRKGC+TFYVYAVR+ G  GFS+ADDL+ ILQ+V+AL DFLD+
Sbjct: 151 NKRLIRGLNGCEIARFKFRKGCITFYVYAVRQVGSLGFSSADDLRTILQSVVALQDFLDH 210

Query: 212 TAMLALPHQRTISYGGAGSRFKPPPVTVVH 242
           TAMLA+P+QRTISY          PV + H
Sbjct: 211 TAMLAMPNQRTISYANVA------PVAMAH 228

[Close]

BLAST of Carg18312 vs. TrEMBL
Match: tr|A0A1S3TU50|A0A1S3TU50_VIGRR (uncharacterized protein LOC106758803 OS=Vigna radiata var. radiata OX=3916 GN=LOC106758803 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.9e-76
Identity = 140/195 (71.79%), Postives = 166/195 (85.13%), Query Frame = 0


Query: 31  TDFSFKPSTAVKGLRFGAQFVVKSFTIRRAWPLEFLQLLSLPPHHDGNTDSDNNNQNRLP 90
           +DFSFKPS+ VKG+RFG QF+VKSFTIRRA PLE L++LS PP     T++ N  +++LP
Sbjct: 31  SDFSFKPSSEVKGIRFGGQFIVKSFTIRRARPLELLKVLSFPP-----TNNTNKPKDKLP 90

Query: 91  FNSTAVFLPTNFTILAHHAWHNLTLGLGTKKSKVILFVFETEALKAAVGHRWPAEMTLGD 150
           F ST  FLPTNFTILAHHAWH LTLGLGTKKSKV+LFVFETEA+KA+V   WP E+ LGD
Sbjct: 91  FPSTTAFLPTNFTILAHHAWHTLTLGLGTKKSKVVLFVFETEAMKASVDRIWPPEIALGD 150

Query: 151 VNRRLIRGLSGCEMARFKFRKGCLTFYVYAVRERGCFGFSAADDLKRILQAVIALNDFLD 210
           VN+RLIRGL GCEMARFKFRKGC+TFYVYAVR+ G FGFS A+DL+ ILQ+V+ L DFLD
Sbjct: 151 VNKRLIRGLHGCEMARFKFRKGCITFYVYAVRQVGSFGFSCAEDLRTILQSVVELKDFLD 210

Query: 211 YTAMLALPHQRTISY 226
           +TAML++PHQR+ISY
Sbjct: 211 HTAMLSMPHQRSISY 220

The following BLAST results are available for this feature:

BLAST of Carg18312 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942622.1	3.0e-121	99.54	uncharacterized protein LOC111447604 [Cucurbita moschata]	[more]
XP_023515552.1	8.7e-121	99.07	uncharacterized protein LOC111779673 [Cucurbita pepo subsp. pepo]	[more]
XP_022984473.1	1.3e-116	96.76	uncharacterized protein LOC111482763 [Cucurbita maxima]	[more]
XP_008461660.1	1.7e-95	80.47	PREDICTED: uncharacterized protein LOC103500208 [Cucumis melo]	[more]
XP_004147694.1	3.2e-91	78.60	PREDICTED: uncharacterized protein LOC101221084 [Cucumis sativus] >KGN50542.1 hy...	[more]

BLAST of Carg18312 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G55420.1	2.3e-67	60.00	unknown protein	[more]

BLAST of Carg18312 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18312 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CF88\|A0A1S3CF88_CUCME	1.1e-95	80.47	uncharacterized protein LOC103500208 OS=Cucumis melo OX=3656 GN=LOC103500208 PE=...	[more]
tr\|A0A0A0KQ89\|A0A0A0KQ89_CUCSA	2.1e-91	78.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G181490 PE=4 SV=1	[more]
tr\|A0A2I4E4V5\|A0A2I4E4V5_9ROSI	4.2e-79	70.14	uncharacterized protein LOC108986302 OS=Juglans regia OX=51240 GN=LOC108986302 P...	[more]
tr\|M5XKJ1\|M5XKJ1_PRUPE	6.0e-78	70.48	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G235300 PE=4 SV=1	[more]
tr\|A0A1S3TU50\|A0A1S3TU50_VIGRR	1.9e-76	71.79	uncharacterized protein LOC106758803 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18312-RA	Carg18312-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR36375:SF1	SUBFAMILY NOT NAMED	coord: 2..226
None	No IPR available	PANTHER	PTHR36375	FAMILY NOT NAMED	coord: 2..226

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18312	Cla004016	Watermelon (97103) v1	carwmB0087
Carg18312	Csa5G181490	Cucumber (Chinese Long) v2	carcuB0098
Carg18312	MELO3C023848	Melon (DHL92) v3.5.1	carmeB0089
Carg18312	ClCG07G003270	Watermelon (Charleston Gray)	carwcgB0090
Carg18312	CSPI05G09600	Wild cucumber (PI 183967)	carcpiB0102
Carg18312	Cucsa.165380	Cucumber (Gy14) v1	carcgyB0108
Carg18312	CmaCh04G011910	Cucurbita maxima (Rimu)	carcmaB0116
Carg18312	CmoCh04G002250	Cucurbita moschata (Rifu)	carcmoB0123
Carg18312	CmoCh04G012650	Cucurbita moschata (Rifu)	carcmoB0124
Carg18312	Lsi04G008780	Bottle gourd (USVL1VR-Ls)	carlsiB080
Carg18312	Cp4.1LG01g10550	Cucurbita pepo (Zucchini)	carcpeB0131
Carg18312	Cp4.1LG01g04730	Cucurbita pepo (Zucchini)	carcpeB0130
Carg18312	CsGy5G006930	Cucumber (Gy14) v2	carcgybB0098
Carg18312	MELO3C023848.2	Melon (DHL92) v3.6.1	carmedB0091
Carg18312	CsaV3_5G008020	Cucumber (Chinese Long) v3	carcucB0105
Carg18312	Cla97C07G131560	Watermelon (97103) v2	carwmbB0091
Carg18312	Bhi07G000783	Wax gourd	carwgoB0104

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18312	Carg00272	Silver-seed gourd	carcarB099

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18312	Cucurbita maxima (Rimu)	carcmaB0115