Carg18310 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18310
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Serine/arginine-rich SC35-like splicing factor
Location	Cucurbita_argyrosperma_scaffold_106 : 24254 .. 28700 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGATACAGTCCACCATATCATAGTCCTCCAAGGAGAGGATATGGCGGTCGAGGAAGAAGCCCCCCGGGAAGGGGTTATGGTGGTGGTGGCGGCGGCGGCGGCGGTGGTGGTGGGTATGGAAGACGAAGGGAACAGTCTCACGGTAGCCTTTTGGTTAGAAATATTCCTATGGATTGCAGGTCAGGATTTGGCCTCTTTTTTTTTCTTTTTCCTTCTTTTCTTTTCCAATTACCATAGTGCTTTGTTCTAATTTTGGATTTAGTACTACTGTTCTACTTCAGGAATTTGTTGTTTTCTCTCGCTGATTTTTAACAACTTGCCTTCTGGTTATATTGGTACTTGCAGGCCAGAGGAGCTTAGAGCTCCATTTGAGAGGTTTGGACTTGTGCGAGATGTGTATATTCCAAAGGATTATTACACAGGGTAAGCATCTGGTGTTTATTTTTCTTATTTATTTTTCACACTGCTCCAACAATGGTATGTGATTGGATTTATTTAGTTGTTATTCAACTTTATTTCTGAAGGTGTACTTTTACATTCCTTGCGAGTTAGGTAAGGACACGTCTTTTTATGGTTAATATCTTAACTTCTGAGCACCAAGTTGCACAAAGATTCGATAAAATTAACCTCAAACAGGGTTCAGGTGGCGATTTAGATTTACTGATTAAGCATCGAGCCAAGCCTCTTTCGCTAGAAATTGAGCACGATCATTCACTCTTATTTAATGCTCTCTGCCATGTGTCATAATACTAAGCTTGCCAATAAATGGTGAAAGTTGAAATATATGGAGTACGTTTAAAGCTTTTCACTTTTGCAATTCAAGATTCTATTTTCAGAACAATCTCTAACTTTATTTTTCTTCTTTCTGGGGGAAAAAACTTGTGTGTCTTCATACACAAGATGAAATACTCATGCAATTTTCAGGGGATTTTTTTTACAACTATTTGAACTTGATCAATTCTTGAGGGTGTACATTTGTGCACCGAGTTCTAAATTTGTAGAGGAATTTTTAGATATCATGGAACTTCCAATTGGATTTGTTATTCATAGTTTGGGAATGAAGAGGATGAAAAATGTCAAATGAAATTTCACCAGACCTTATTTTTTTCTAGGTGAATTTTATTCCCATTTCATAGTGTGTTAAATTTTGAACTGCTTTGTCAGGGGGTATGTTGGTTTGAACTTTGAAGTTAAAACAAGCCCAAGCCCCTATTAATGAGGGTGTACTACTTTTCACTGCCTAACATATTGCTCATCAAGAATGTAAAGAGTAATATCGAAATGAGGGTGTCTCTCTCTGAGGAGATCTTAGATAATTACTTCATCAACAGAAGTTGATGAGGAAGAAGATAGATTCTTGAGCAATTGAAGCCAACAAGGTGAAGGTTTTAAGGTTGTGGAATGTTTGTTCAAGTGCTTCGTGTGTTCCCAAGTATTTGAAGAATTTTCAAGTCATGAATTGTTGGTTTCAAGTACTTATATCAAGAAATGTGAAGATTTTTCAAGTCAAGTTACATTGAAACGAAGTGCTTATAGTTTCAAGAATATGAAGATTTTTCAAGTCTCTTGCCTCTTTCATGCTTGATTGTAAAGAGAAGGTTAGCTACTAAACTTTGAAATCAGCTGCTTTATATAACTTCAGCCTCAGCTTTGAAGGAAGCTGTCTGAAGCTAATATTGGATATGAAAAGAAAGCTATTTAGTTTATGGCTCCCTGAATCCTTTTAGGCATGAAAATAATACTAATGTGATGATTCAGTCTTTACCAAATATTTTTGTCCAGAATGAGTTTCTTCTTTTTATCATAAGCATTTTGTTTGAATTCTTTGCAGTGATCCACGAGGATTTGCGTTTGTGGAGTTTGTTGATCCTTATGAGGCCTCTGAAGCTCAGTATCATATGAATGGGAAAAAATTTGCTGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAGAGGCCAGAACAGATGCGTCAAAGGAGTAGAAGGTAGTTTGTGTATTCTCAGTTACCTCTTTTTCTCCTTTCTTTCAAGAGTATAATTTTACAATCCACCTGACATTCTGTTAAACTGAAAGTAATCCATCTTATTTTTACAATCCAAAACTCCTGCTTTTTTTATTCTTCATTCACTGTGTTCAATGGAAAGTAGTCTTTTACGATTTTTATTTAGTTGCGAGTTACTTATGCTTTACTATTCTATTTTCCCTTTCTGTAGGGGACCATCTGGCTATGGTGGACGGCGTTCTTATTATGGTATGGGTACAGTAGTCTCTCTTCAAATTTGATGTGTCTTCTTTTAAATAATCTTTATATGTAAATGAGTACTCCAACCAAAAAATAGTTCAGTGAGAAGATCTCGTATGAATTTTTCTCATTTTTCTAGTTCATGTTACTTCTACTTCTAGATTGTTCAAGAAAAGAAGAGTATAACATTACTTCTTGTTATGGAACTCTTGGACACAACAGCTTGTAGCAGCTATTGATGATCTGTAGTATATGGGATATATTTCTAATATTTTTAGGTTGTTCTTTGACTTATCTAAAGATTTAGGATTGGTTATTTATGTAACAACCCAAGCAATTGAGCTTATTTATAAGCTCTAAGTTCAGTGGTCATATAGTATCCTTTATATGGACCTTTTTTTTTTGTGTGACATGAACTGAGAAGTTCCTCACATGCCACATCCTGAGGAATTTTGGTTTTTGATGCTTTTATGTGGATATATTGTCTCTAAACCTTTTGTTCCCATATAGCTTTTATTAGGTGTAAATGTAAGCCTATAATAATTCTTTTGTTTCTGTGAGCCTAATTGCAGCTCGTTTGTTATGAATTTGATAATTTTCCGTCTTGCAGGTTTTGTTAACTGATTGAATTAAAAATACAAAACTTTGTACATTCAATTTGTTCGTGGATATTATAGATTTTTGTAGAACACACACTAAAGCTTGGAATCAAATCAATCATTAACTATTGTTGTAGACAAAACATGTCCATATTAGATTACTGTGTTCAATGATCAAAGCGTAGTTTCAGGATGTAATTGATCATGATTTTTTTTTTTTTTTGACAATATAGGGCGTTCTAGATCTCGTTCAGTGTCTCGATCACGCTCCCCCCATCGTCCTTCAGGTTCAAGTAGATATCGATCAAGGTAATCTATTTAAAACAGAATGTTCCATCTTTTATTTATGGTTTTGGTAGTAAGGGTGGCCAAATGCAATTGCCAGGTCATACTCTCCTGCTCCGAGATGGCGAGGCAACTATTCTCTTTCCCCCGATAGGCGTCATGCAGACTACCCCAGATCACCAAGAGGTGCTCCTCGTGAGCGAGATGGTGAGAGGAGTCATCAAGTATATTCTCCAGGTTATGATAATGCTGGTGGTCACGATCACGATGGAAATGGATATCATGAGTAAGTTGAATGATTTACCGATAGCTTGTTGCTTTTTGGGGAGCACCTCGAATATGCCAGCTAGTTTTAGTGTTTTCTTGTTTCTGTGTTTTTGCATGCATTGCTTATAGCATATGCTAGTTTCATTATTGAGAATGTTCACTTTCAGTTCGCTTAAACTTAATTTTCTCATCTTTGTTTATTATGCTACTATAAAAGTGCATCCTGTTCTGCTTTATTTATTTGTCAATCCTATTTTTTCTTTAGCAAGACTGCATTTGAAGGAGAGGATGCACGAGCTGACTGGAGGTCTTCTCCTGGTAGAACATCAAGGTCTCCTTCGGGGTCCCGATCCCGCTCTGCTGATGCTTCACCAAGACATGGTAGATGAATTTTCTAGATGATGTAAACCTTCGTTTCTAACATGTAAGATTTGTTAGTCTCAAGTTAGAAAATTCCAAGATTGTATCTTGTTAGATGTTCCTAGTGTTGGGATTTTCAGGATCTGGGCAATTTACGTTGTGCTTTCATTTGAAGTTTTAACATTGTAATGGGTAGACCATCCAATCCCTTGTACTAGTTTTCTGGATTGCGCAAGCTCTTCTTCTTCATCGATGTCTCACTCGGCATCGTCGGTGAGGTGATGACCCATCCCATTCACGATATAATACCCATACAAAGGTATTGATCTCTCATAAGATGGTGGCACTCCATAATGTTCTTCACCAGCCTTTCCTCCGCATTATGTTCTGTTTTGAGTTCTGACTTTGCTTATTCTCTCAACTTGCATTGTGTACCGACAAAGCTGCGGTGTAGTTTATGATCATTTTACTTGTGTTGGAGAGCTTGATTGAATTTAGATCATTTGTGAAATTCTAGTTAATCTAATTATTTTTTTATTCACTATATATACTTGGTTTATATACATACGGGCAAACTTTCCATCTAAAATAAATAAATATAAGCTCACGAAGTTCCGTTATATCTGAATTGAGGGCTAAGCTTTCCATATTTAAAGAAAAATGATCGACTTCTCTTATG

mRNA sequence

ATGAGAAGATACAGTCCACCATATCATAGTCCTCCAAGGAGAGGATATGGCGGTCGAGGAAGAAGCCCCCCGGGAAGGGGTTATGGTGGTGGTGGCGGCGGCGGCGGCGGTGGTGGTGGGTATGGAAGACGAAGGGAACAGTCTCACGGTAGCCTTTTGGTTAGAAATATTCCTATGGATTGCAGGCCAGAGGAGCTTAGAGCTCCATTTGAGAGGTTTGGACTTGTGCGAGATGTGTATATTCCAAAGGATTATTACACAGGTGATCCACGAGGATTTGCGTTTGTGGAGTTTGTTGATCCTTATGAGGCCTCTGAAGCTCAGTATCATATGAATGGGAAAAAATTTGCTGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAGAGGCCAGAACAGATGCGTCAAAGGAGTAGAAGGGGACCATCTGGCTATGGTGGACGGCGTTCTTATTATGGGCGTTCTAGATCTCGTTCAGTGTCTCGATCACGCTCCCCCCATCGTCCTTCAGGTTCAAGTAGATATCGATCAAGGTCATACTCTCCTGCTCCGAGATGGCGAGGCAACTATTCTCTTTCCCCCGATAGGCGTCATGCAGACTACCCCAGATCACCAAGAGGTGCTCCTCGTGAGCGAGATGGTGAGAGGAGTCATCAAGTATATTCTCCAGGTTATGATAATGCTGGTGGTCACGATCACGATGGAAATGGATATCATGACAAGACTGCATTTGAAGGAGAGGATGCACGAGCTGACTGGAGGTCTTCTCCTGGTAGAACATCAAGGTCTCCTTCGGGGTCCCGATCCCGCTCTGCTGATGCTTCACCAAGACATGGTAGATGAATTTTCTAGATGATGTAAACCTTCGTTTCTAACATGTAAGATTTGTTAGTCTCAAGTTAGAAAATTCCAAGATTGTATCTTGTTAGATGTTCCTAGTGTTGGGATTTTCAGGATCTGGGCAATTTACGTTGTGCTTTCATTTGAAGTTTTAACATTGTAATGGGTAGACCATCCAATCCCTTGTACTAGTTTTCTGGATTGCGCAAGCTCTTCTTCTTCATCGATGTCTCACTCGGCATCGTCGGTGAGGTGATGACCCATCCCATTCACGATATAATACCCATACAAAGGTATTGATCTCTCATAAGATGGTGGCACTCCATAATGTTCTTCACCAGCCTTTCCTCCGCATTATGTTCTGTTTTGAGTTCTGACTTTGCTTATTCTCTCAACTTGCATTGTGTACCGACAAAGCTGCGGTGTAGTTTATGATCATTTTACTTGTGTTGGAGAGCTTGATTGAATTTAGATCATTTGTGAAATTCTAGTTAATCTAATTATTTTTTTATTCACTATATATACTTGGTTTATATACATACGGGCAAACTTTCCATCTAAAATAAATAAATATAAGCTCACGAAGTTCCGTTATATCTGAATTGAGGGCTAAGCTTTCCATATTTAAAGAAAAATGATCGACTTCTCTTATG

Coding sequence (CDS)

ATGAGAAGATACAGTCCACCATATCATAGTCCTCCAAGGAGAGGATATGGCGGTCGAGGAAGAAGCCCCCCGGGAAGGGGTTATGGTGGTGGTGGCGGCGGCGGCGGCGGTGGTGGTGGGTATGGAAGACGAAGGGAACAGTCTCACGGTAGCCTTTTGGTTAGAAATATTCCTATGGATTGCAGGCCAGAGGAGCTTAGAGCTCCATTTGAGAGGTTTGGACTTGTGCGAGATGTGTATATTCCAAAGGATTATTACACAGGTGATCCACGAGGATTTGCGTTTGTGGAGTTTGTTGATCCTTATGAGGCCTCTGAAGCTCAGTATCATATGAATGGGAAAAAATTTGCTGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAGAGGCCAGAACAGATGCGTCAAAGGAGTAGAAGGGGACCATCTGGCTATGGTGGACGGCGTTCTTATTATGGGCGTTCTAGATCTCGTTCAGTGTCTCGATCACGCTCCCCCCATCGTCCTTCAGGTTCAAGTAGATATCGATCAAGGTCATACTCTCCTGCTCCGAGATGGCGAGGCAACTATTCTCTTTCCCCCGATAGGCGTCATGCAGACTACCCCAGATCACCAAGAGGTGCTCCTCGTGAGCGAGATGGTGAGAGGAGTCATCAAGTATATTCTCCAGGTTATGATAATGCTGGTGGTCACGATCACGATGGAAATGGATATCATGACAAGACTGCATTTGAAGGAGAGGATGCACGAGCTGACTGGAGGTCTTCTCCTGGTAGAACATCAAGGTCTCCTTCGGGGTCCCGATCCCGCTCTGCTGATGCTTCACCAAGACATGGTAGATGA

Protein sequence

MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGGYGRRREQSHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRSRSRSVSRSRSPHRPSGSSRYRSRSYSPAPRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDHDGNGYHDKTAFEGEDARADWRSSPGRTSRSPSGSRSRSADASPRHGR

Homology

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BLAST of Carg18310 vs. NCBI nr
Match: XP_023515541.1 (serine/arginine-rich SC35-like splicing factor SCL30 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408.7 bits (1049), Expect = 1.6e-110
Identity = 271/282 (96.10%), Postives = 272/282 (96.45%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGSLLVRNIPMD 60
           MRRYSPPYHSPPRRGYGG  XXXXXXXXXXXXXXXXXXXXXXXXXXXSHGSLLVRNIPMD
Sbjct: 1   MRRYSPPYHSPPRRGYGG--XXXXXXXXXXXXXXXXXXXXXXXXXXXSHGSLLVRNIPMD 60

Query: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE
Sbjct: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRXXXXXXXXXXXXXXXXXXXXXXXX 180
           ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDHXXXXX 240
           XXXXXXRWRGNYSLSPDRRHA+YPRSPRGAP ERDGERSHQVYSPGYDNAGGHDH     
Sbjct: 181 XXXXXXRWRGNYSLSPDRRHAEYPRSPRGAPCERDGERSHQVYSPGYDNAGGHDHDGNGY 240

Query: 241 XDKTAFEGEDARADWRSSPGRTSRSPSGSRSRSADASPRHGR 283
            DK AFEGEDARADWRSSPGRTSRSPSGSRSRSADASPRHGR
Sbjct: 241 HDKPAFEGEDARADWRSSPGRTSRSPSGSRSRSADASPRHGR 280

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BLAST of Carg18310 vs. NCBI nr
Match: XP_022942812.1 (serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita moschata] >XP_022942815.1 serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita moschata] >XP_022942816.1 serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita moschata])

HSP 1 Score: 408.3 bits (1048), Expect = 2.1e-110
Identity = 262/282 (92.91%), Postives = 262/282 (92.91%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGSLLVRNIPMD 60
           MRRYSPPYHSPPRRGY      XXXXXXXXXXXXXXXXXX       SHGSLLVRNIPMD
Sbjct: 1   MRRYSPPYHSPPRRGY------XXXXXXXXXXXXXXXXXXYGRQREQSHGSLLVRNIPMD 60

Query: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE
Sbjct: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRXXXXXXXXXXXXXXXXXXXXXXXX 180
           ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDHXXXXX 240
           XXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDH     
Sbjct: 181 XXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDHDGNGY 240

Query: 241 XDKTAFEGEDARADWRSSPGRTSRSPSGSRSRSADASPRHGR 283
            DK AFEGEDARADWRSSPGRTSRSPSGSRSRSADASPRHGR
Sbjct: 241 HDKPAFEGEDARADWRSSPGRTSRSPSGSRSRSADASPRHGR 276

[Close]

BLAST of Carg18310 vs. NCBI nr
Match: XP_022986899.1 (serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita maxima] >XP_022986907.1 serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita maxima] >XP_022986915.1 serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita maxima])

HSP 1 Score: 385.2 bits (988), Expect = 1.9e-103
Identity = 256/284 (90.14%), Postives = 256/284 (90.14%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGSLLVRNIPMD 60
           MRRYSPPYHSPPRRG      XXXXXXXXXXXXXXXXXXX       SHGSLLVRNIPMD
Sbjct: 1   MRRYSPPYHSPPRRG------XXXXXXXXXXXXXXXXXXXYVRRREHSHGSLLVRNIPMD 60

Query: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE
Sbjct: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRXXXXXXXXXXXXXXXXXXXXXXXX 180
           ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDH--XXX 240
           XXXXXXRWRGNYSLSP RRHADYPRSPR  PRERDGERS QVYSPGYDNAG HDH     
Sbjct: 181 XXXXXXRWRGNYSLSPGRRHADYPRSPRDVPRERDGERSRQVYSPGYDNAGAHDHDGNGN 240

Query: 241 XXXDKTAFEGEDARADWRSSPGRTSRSPSGSRSRSADASPRHGR 283
              DK AFEG DARADWRSSPGRTSRSPSGSRSRSADASPRHGR
Sbjct: 241 GYHDKPAFEGGDARADWRSSPGRTSRSPSGSRSRSADASPRHGR 278

[Close]

BLAST of Carg18310 vs. NCBI nr
Match: XP_008461655.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >XP_008461656.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >XP_008461657.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo])

HSP 1 Score: 371.3 bits (952), Expect = 2.9e-99
Identity = 254/283 (89.75%), Postives = 260/283 (91.87%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGSLLVRNIPMD 60
           MRRYSPPYHSPPRRGYGG   XXXXXXXXXXXXXXXXXXXXXXXXX  HGSLLVRNIPMD
Sbjct: 1   MRRYSPPYHSPPRRGYGG---XXXXXXXXXXXXXXXXXXXXXXXXXQPHGSLLVRNIPMD 60

Query: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           CRPEELRAPFERFGLVRDVYIPKDYYTG+PRGFAFVEFVDPYEASEAQYHMNGKKFAGRE
Sbjct: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYG-RXXXXXXXXXXXXXXXXXXXXXXX 180
           ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRS+YG  XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDHXXXX 240
           XXXXXXX WRG+YS+SP RRHADYP SPRGAPRERD ERS QVYSPGYDNA  HD     
Sbjct: 181 XXXXXXXXWRGDYSVSPGRRHADYPESPRGAPRERDVERSRQVYSPGYDNADEHDQNGNG 240

Query: 241 XXDKTAFEGEDARADWRSSPGRTSRSPSGSRSRSADASPRHGR 283
             DK+ FEGEDAR +WRSSPGRTSRSPSGSRSRSADASPRHGR
Sbjct: 241 YHDKSGFEGEDARGNWRSSPGRTSRSPSGSRSRSADASPRHGR 280

[Close]

BLAST of Carg18310 vs. NCBI nr
Match: XP_022987464.1 (serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita maxima] >XP_022987470.1 serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita maxima])

HSP 1 Score: 363.6 bits (932), Expect = 6.0e-97
Identity = 257/285 (90.18%), Postives = 260/285 (91.23%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGSLLVRNIPMD 60
           MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX  HGSLLVRNIPMD
Sbjct: 1   MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPHGSLLVRNIPMD 60

Query: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           CRPEELRAPFERFGLVRDVYIPKDYYTG PRGFAFVEFVDPYEASEAQYHMNGKKFAGRE
Sbjct: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGQPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGR-XXXXXXXXXXXXXXXXXXXXXXX 180
           I VVLAAESRKRPEQMRQRSRRGPS YGGRRSYYGR XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 IAVVLAAESRKRPEQMRQRSRRGPSDYGGRRSYYGRXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGH--DHXX 240
           XXXXXXX  RG+YS+SP RRHADYPRSPRGA RERDGERS QVYSPGYDNA G   D   
Sbjct: 181 XXXXXXXXXRGDYSVSPSRRHADYPRSPRGAARERDGERSRQVYSPGYDNADGPDVDGNG 240

Query: 241 XXXXDKTAFEGEDARADWRSSPGRTSRSPSGSRSRSADASPRHGR 283
               DK AFEGEDARA+WR SP RTSRSPSGSRSRSADASPRHGR
Sbjct: 241 NGYHDKPAFEGEDARANWRPSPDRTSRSPSGSRSRSADASPRHGR 285

[Close]

BLAST of Carg18310 vs. TAIR10
Match: AT3G13570.1 (SC35-like splicing factor 30A)

HSP 1 Score: 128.3 bits (321), Expect = 7.7e-30
Identity = 57/95 (60.00%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 51  SLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYH 110
           SLLVRN+  DCR E+LR PFE+FG V+D+Y+P+DYYTGDPRGF F++F+DP +A+EA++ 
Sbjct: 38  SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97

Query: 111 MNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPS 146
           M+G    GRE+TVV A E+RK+P +MR R R G S
Sbjct: 98  MDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRS 132

[Close]

BLAST of Carg18310 vs. TAIR10
Match: AT3G55460.1 (SC35-like splicing factor 30)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-28
Identity = 123/235 (52.34%), Postives = 135/235 (57.45%), Query Frame = 0


Query: 50  GSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQY 109
           GSLLVRNIP+DCRPEELR PFERFG VRDVYIP+DYY+G PRGFAFVEFVD Y+A EAQ 
Sbjct: 47  GSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQR 106

Query: 110 HMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRXXXXXXXXXXXXX 169
            MN + FAGREITVV                                XXXXXXXXXXXXX
Sbjct: 107 SMNRRSFAGREITVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 166

Query: 170 XXXXXXXXXXXXXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDN 229
           XXXXXXXXXXXXXXXXX                    PRG   E D   S + YSPGY+ 
Sbjct: 167 XXXXXXXXXXXXXXXXXXXXXXGG------------PPRG---EEDENYSRRSYSPGYEG 226

Query: 230 AGG-----HDHXXXXXXDKTAFEGEDARADWRSSPGRTSRSPSGSRSRSADASPR 280
           A         +      +K  +E ED R   R+     SRSPSGSRSRS + SPR
Sbjct: 227 AAAAAPDRDRNGDNEIREKPGYEAEDRRRGGRA----VSRSPSGSRSRSVEVSPR 262

[Close]

BLAST of Carg18310 vs. TAIR10
Match: AT1G55310.3 (SC35-like splicing factor 33)

HSP 1 Score: 118.6 bits (296), Expect = 6.1e-27
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 51  SLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG------------DPRGFAFVEF 110
           SLLVRN+  DCR E+LR  FE+FG V+D+Y+P+DYYTG            DPRGF FV+F
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQF 96

Query: 111 VDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGR 151
           +DP +A++A++HM+G    GRE+TVV A E+RK+P +MR R R G S +  R
Sbjct: 97  MDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGSRFRDR 148

[Close]

BLAST of Carg18310 vs. TAIR10
Match: AT5G18810.1 (SC35-like splicing factor 28)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-23
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 52  LLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHM 111
           LL+RN+P+D RP +LR  FERFG ++D+Y+P++YYTG+PRGF FV++    +A+EA   M
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 112 NGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGR 157
           N K   GREI +V A E+RK P++MR       +G  GR   Y R
Sbjct: 109 NHKVIGGREIAIVFAEENRKTPQEMRT-----TNGTSGRHGDYKR 148

[Close]

BLAST of Carg18310 vs. TAIR10
Match: AT2G21440.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-11
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 52  LLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHM 111
           L++RN+P   +P +++  F   G V DV+IPK++ TG P+GFAFV+F    +A+ A    
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392

Query: 112 NGKKFAGREITV 124
           NG  F  R I V
Sbjct: 393 NGHMFGKRPIAV 404

[Close]

BLAST of Carg18310 vs. Swiss-Prot
Match: sp|Q9LHP2|SL30A_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-28
Identity = 57/95 (60.00%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 51  SLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYH 110
           SLLVRN+  DCR E+LR PFE+FG V+D+Y+P+DYYTGDPRGF F++F+DP +A+EA++ 
Sbjct: 38  SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97

Query: 111 MNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPS 146
           M+G    GRE+TVV A E+RK+P +MR R R G S
Sbjct: 98  MDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRS 132

[Close]

BLAST of Carg18310 vs. Swiss-Prot
Match: sp|Q9SEU4|SRC33_ARATH (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.0e-28
Identity = 56/93 (60.22%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 51  SLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYH 110
           SLLVRN+  DCR E+LR  FE+FG V+D+Y+P+DYYTGDPRGF FV+F+DP +A++A++H
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 111 MNGKKFAGREITVVLAAESRKRPEQMRQRSRRG 144
           M+G    GRE+TVV A E+RK+P +MR R R G
Sbjct: 97  MDGYLLLGRELTVVFAEENRKKPTEMRARERGG 129

[Close]

BLAST of Carg18310 vs. Swiss-Prot
Match: sp|Q8L3X8|SRC30_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-27
Identity = 123/235 (52.34%), Postives = 135/235 (57.45%), Query Frame = 0


Query: 50  GSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQY 109
           GSLLVRNIP+DCRPEELR PFERFG VRDVYIP+DYY+G PRGFAFVEFVD Y+A EAQ 
Sbjct: 47  GSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQR 106

Query: 110 HMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRXXXXXXXXXXXXX 169
            MN + FAGREITVV                                XXXXXXXXXXXXX
Sbjct: 107 SMNRRSFAGREITVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 166

Query: 170 XXXXXXXXXXXXXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDN 229
           XXXXXXXXXXXXXXXXX                    PRG   E D   S + YSPGY+ 
Sbjct: 167 XXXXXXXXXXXXXXXXXXXXXXGG------------PPRG---EEDENYSRRSYSPGYEG 226

Query: 230 AGG-----HDHXXXXXXDKTAFEGEDARADWRSSPGRTSRSPSGSRSRSADASPR 280
           A         +      +K  +E ED R   R+     SRSPSGSRSRS + SPR
Sbjct: 227 AAAAAPDRDRNGDNEIREKPGYEAEDRRRGGRA----VSRSPSGSRSRSVEVSPR 262

[Close]

BLAST of Carg18310 vs. Swiss-Prot
Match: sp|Q1PDV2|SRC28_ARATH (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.3e-22
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 52  LLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHM 111
           LL+RN+P+D RP +LR  FERFG ++D+Y+P++YYTG+PRGF FV++    +A+EA   M
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 112 NGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGR 157
           N K   GREI +V A E+RK P++MR       +G  GR   Y R
Sbjct: 109 NHKVIGGREIAIVFAEENRKTPQEMRT-----TNGTSGRHGDYKR 148

[Close]

BLAST of Carg18310 vs. Swiss-Prot
Match: sp|Q8WXF0|SRS12_HUMAN (Serine/arginine-rich splicing factor 12 OS=Homo sapiens OX=9606 GN=SRSF12 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-17
Identity = 47/102 (46.08%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 51  SLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYH 110
           SL +RN+    RPE+LR  F R+G + DVYIP D+YT  PRGFA+V+F D  +A +A Y+
Sbjct: 11  SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70

Query: 111 MNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRS 153
           +N K   GR+I +  A   RK P QM+ + R   S    RRS
Sbjct: 71  LNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRS 112

[Close]

BLAST of Carg18310 vs. TrEMBL
Match: tr|A0A1S3CFP8|A0A1S3CFP8_CUCME (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucumis melo OX=3656 GN=LOC103500205 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 1.9e-99
Identity = 254/283 (89.75%), Postives = 260/283 (91.87%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGSLLVRNIPMD 60
           MRRYSPPYHSPPRRGYGG   XXXXXXXXXXXXXXXXXXXXXXXXX  HGSLLVRNIPMD
Sbjct: 1   MRRYSPPYHSPPRRGYGG---XXXXXXXXXXXXXXXXXXXXXXXXXQPHGSLLVRNIPMD 60

Query: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           CRPEELRAPFERFGLVRDVYIPKDYYTG+PRGFAFVEFVDPYEASEAQYHMNGKKFAGRE
Sbjct: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYG-RXXXXXXXXXXXXXXXXXXXXXXX 180
           ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRS+YG  XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 ITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDHXXXX 240
           XXXXXXX WRG+YS+SP RRHADYP SPRGAPRERD ERS QVYSPGYDNA  HD     
Sbjct: 181 XXXXXXXXWRGDYSVSPGRRHADYPESPRGAPRERDVERSRQVYSPGYDNADEHDQNGNG 240

Query: 241 XXDKTAFEGEDARADWRSSPGRTSRSPSGSRSRSADASPRHGR 283
             DK+ FEGEDAR +WRSSPGRTSRSPSGSRSRSADASPRHGR
Sbjct: 241 YHDKSGFEGEDARGNWRSSPGRTSRSPSGSRSRSADASPRHGR 280

[Close]

BLAST of Carg18310 vs. TrEMBL
Match: tr|A0A0A0KNV5|A0A0A0KNV5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G181460 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 1.7e-92
Identity = 251/286 (87.76%), Postives = 260/286 (90.91%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-HGSLLVRNIPM 60
           MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  HGSLLVRNIPM
Sbjct: 1   MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPHGSLLVRNIPM 60

Query: 61  DCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGR 120
           DCRPEELRAPFERFGLVRDVYIPKDYYTG+PRGFAFVEFVDPYEASEAQYHMNGKKFAGR
Sbjct: 61  DCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGR 120

Query: 121 EITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYG-RXXXXXXXXXXXXXXXXXXXXXX 180
           EITVVLAAESRKRPEQMRQRSRRGPSGYGGRRS+YG  XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 EITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDHXXX 240
           XXXXXXXX WRG+YS+SP RRH DYP SPRGAPRERD ERS QVYSPGYDNA  H     
Sbjct: 181 XXXXXXXXXWRGDYSVSPGRRHTDYPESPRGAPRERDVERSRQVYSPGYDNADEHGQNGN 240

Query: 241 XXXDKT-AFEGED-ARADWRSSPGRTSRSPSGSRSRSADASPRHGR 283
              DK+ + E +D  R +WR+SPGRTSRSPSGSRSRSADASPRHGR
Sbjct: 241 GYHDKSPSVEHQDHLRVNWRASPGRTSRSPSGSRSRSADASPRHGR 286

[Close]

BLAST of Carg18310 vs. TrEMBL
Match: tr|A0A061FTS6|A0A061FTS6_THECC (SC35-like splicing factor 30 isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_042751 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.8e-73
Identity = 179/284 (63.03%), Postives = 204/284 (71.83%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGSLLVRNIPMD 60
           MRRYSP Y+SPPRR        XXXXXXXXXXXXXXXXXX       +HGSLLVRNIP+D
Sbjct: 1   MRRYSPQYYSPPRR--------XXXXXXXXXXXXXXXXXXYGRRREQNHGSLLVRNIPLD 60

Query: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           CRPEELR PFERFGLVRDVYIPKDYYTG+PRGFAFV+FVD YEA+EAQ  MNGK FAGRE
Sbjct: 61  CRPEELRIPFERFGLVRDVYIPKDYYTGEPRGFAFVQFVDSYEAAEAQRRMNGKLFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSR-RGPSGYGGR-RSYYGRXXXXXXXXXXXXXXXXXXXXXX 180
           I+VV+AAE+RKRPE+MR ++R RG SGYGGR                             
Sbjct: 121 ISVVVAAETRKRPEEMRHKARLRGSSGYGGRXXXXXXSRSRSLSPMHSPHHPSGSRGRYR 180

Query: 181 XXXXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDHXXX 240
                   R RGNYS+SP RRHAD+PRSPRG P+ERDG+ +H+ YSPGY+NAGG+ +   
Sbjct: 181 SRSYSPAARRRGNYSVSPGRRHADHPRSPRGPPQERDGDYNHRSYSPGYENAGGNGY--- 240

Query: 241 XXXDKTAFEGEDARADWRSSPGRTSRSPSGSRSRSADASPRHGR 283
              +K+A+E E+ARA WRS PGR SRSPSGSRSRSAD SPR  R
Sbjct: 241 --GEKSAYESEEARAAWRSPPGRVSRSPSGSRSRSADLSPRRSR 271

[Close]

BLAST of Carg18310 vs. TrEMBL
Match: tr|A0A2H5PJ13|A0A2H5PJ13_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_140920 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.1e-68
Identity = 208/289 (71.97%), Postives = 233/289 (80.62%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGSLLVRNIPMD 60
           MRRYSPPY+SPPRRGYG      XXXXXXXXXXXXXXXXXXXXX   +HGSLLVRNIP+D
Sbjct: 1   MRRYSPPYYSPPRRGYG------XXXXXXXXXXXXXXXXXXXXXKEQNHGSLLVRNIPLD 60

Query: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           CRPEELRAPFERFG+VRDVY+PKDYYTG+PRGFAFV+FVDPYEA+EAQ+HMNGK+FAGRE
Sbjct: 61  CRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSR-RGPSGYGG-RRSYYGR-XXXXXXXXXXXXXXXXXXXXX 180
           I+VVLAAESRKRPE+MRQR R RG S YGG R SYYGR   XXXXXXXXXXXXXXXXXXX
Sbjct: 121 ISVVLAAESRKRPEEMRQRHRFRGGSSYGGPRSSYYGRYRSXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGY-DNAGGHDHX 240
           XXXXXXX  R   +YS+SP RRH ++P SPRG P+ER  E S + YSPGY D+A   +  
Sbjct: 181 XXXXXXXVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPN 240

Query: 241 XXXXXDKTAFEGEDARADWRS-SPGRTSRSPSG--SRSRSADASPRHGR 283
                +K+ +  E+ +A WRS  PG  SRSPSG  SRSRSAD SPRH R
Sbjct: 241 GNGYGEKSGY--EETQAHWRSPPPGGVSRSPSGSRSRSRSADLSPRHTR 281

[Close]

BLAST of Carg18310 vs. TrEMBL
Match: tr|V4SLZ3|V4SLZ3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10032342mg PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.1e-68
Identity = 208/289 (71.97%), Postives = 233/289 (80.62%), Query Frame = 0


Query: 1   MRRYSPPYHSPPRRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGSLLVRNIPMD 60
           MRRYSPPY+SPPRRGYG      XXXXXXXXXXXXXXXXXXXXX   +HGSLLVRNIP+D
Sbjct: 1   MRRYSPPYYSPPRRGYG------XXXXXXXXXXXXXXXXXXXXXKEQNHGSLLVRNIPLD 60

Query: 61  CRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGRE 120
           CRPEELRAPFERFG+VRDVY+PKDYYTG+PRGFAFV+FVDPYEA+EAQ+HMNGK+FAGRE
Sbjct: 61  CRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGRE 120

Query: 121 ITVVLAAESRKRPEQMRQRSR-RGPSGYGG-RRSYYGR-XXXXXXXXXXXXXXXXXXXXX 180
           I+VVLAAESRKRPE+MRQR R RG S YGG R SYYGR   XXXXXXXXXXXXXXXXXXX
Sbjct: 121 ISVVLAAESRKRPEEMRQRHRFRGGSSYGGPRSSYYGRYRSXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGY-DNAGGHDHX 240
           XXXXXXX  R   +YS+SP RRH ++P SPRG P+ER  E S + YSPGY D+A   +  
Sbjct: 181 XXXXXXXVPRQHEDYSISPRRRHIEHPGSPRGPPQERGAEYSRRSYSPGYDDSADRRNPN 240

Query: 241 XXXXXDKTAFEGEDARADWRS-SPGRTSRSPSG--SRSRSADASPRHGR 283
                +K+ +  E+ +A WRS  PG  SRSPSG  SRSRSAD SPRH R
Sbjct: 241 GNGYGEKSGY--EETQAHWRSPPPGGVSRSPSGSRSRSRSADLSPRHTR 281

The following BLAST results are available for this feature:

BLAST of Carg18310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515541.1	1.6e-110	96.10	serine/arginine-rich SC35-like splicing factor SCL30 isoform X2 [Cucurbita pepo ...	[more]
XP_022942812.1	2.1e-110	92.91	serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita moschata] >XP_02...	[more]
XP_022986899.1	1.9e-103	90.14	serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita maxima] >XP_0229...	[more]
XP_008461655.1	2.9e-99	89.75	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >...	[more]
XP_022987464.1	6.0e-97	90.18	serine/arginine-rich SC35-like splicing factor SCL30 [Cucurbita maxima] >XP_0229...	[more]

BLAST of Carg18310 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13570.1	7.7e-30	60.00	SC35-like splicing factor 30A	[more]
AT3G55460.1	1.1e-28	52.34	SC35-like splicing factor 30	[more]
AT1G55310.3	6.1e-27	51.79	SC35-like splicing factor 33	[more]
AT5G18810.1	1.8e-23	48.57	SC35-like splicing factor 28	[more]
AT2G21440.1	1.2e-11	41.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg18310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LHP2\|SL30A_ARATH	1.4e-28	60.00	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SEU4\|SRC33_ARATH	4.0e-28	60.22	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
sp\|Q8L3X8\|SRC30_ARATH	2.0e-27	52.34	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
sp\|Q1PDV2\|SRC28_ARATH	3.3e-22	48.57	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
sp\|Q8WXF0\|SRS12_HUMAN	2.5e-17	46.08	Serine/arginine-rich splicing factor 12 OS=Homo sapiens OX=9606 GN=SRSF12 PE=2 S...	[more]

BLAST of Carg18310 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CFP8\|A0A1S3CFP8_CUCME	1.9e-99	89.75	serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0KNV5\|A0A0A0KNV5_CUCSA	1.7e-92	87.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G181460 PE=4 SV=1	[more]
tr\|A0A061FTS6\|A0A061FTS6_THECC	6.8e-73	63.03	SC35-like splicing factor 30 isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_042751 ...	[more]
tr\|A0A2H5PJ13\|A0A2H5PJ13_CITUN	5.1e-68	71.97	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_140920 PE=4 SV=1	[more]
tr\|V4SLZ3\|V4SLZ3_9ROSI	5.1e-68	71.97	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10032342mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18310-RA	Carg18310-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 51..124 e-value: 4.7E-21 score: 85.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 52..122 e-value: 3.2E-19 score: 68.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 50..128 score: 17.83
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 41..165 e-value: 1.9E-26 score: 94.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..257
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..181
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 37..280
None	No IPR available	PANTHER	PTHR23147:SF1	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30	coord: 37..280
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 47..157

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18310	Cla004019	Watermelon (97103) v1	carwmB0087
Carg18310	Csa5G181460	Cucumber (Chinese Long) v2	carcuB0098
Carg18310	MELO3C023845	Melon (DHL92) v3.5.1	carmeB0089
Carg18310	ClCG07G003240	Watermelon (Charleston Gray)	carwcgB0090
Carg18310	CSPI05G09570	Wild cucumber (PI 183967)	carcpiB0102
Carg18310	Cucsa.165410	Cucumber (Gy14) v1	carcgyB0108
Carg18310	CmaCh04G011940	Cucurbita maxima (Rimu)	carcmaB0116
Carg18310	CmaCh04G002220	Cucurbita maxima (Rimu)	carcmaB0115
Carg18310	CmoCh04G012690	Cucurbita moschata (Rifu)	carcmoB0124
Carg18310	Lsi04G008760	Bottle gourd (USVL1VR-Ls)	carlsiB080
Carg18310	Cp4.1LG01g04840	Cucurbita pepo (Zucchini)	carcpeB0130
Carg18310	Cp4.1LG01g10630	Cucurbita pepo (Zucchini)	carcpeB0131
Carg18310	CsGy5G006900	Cucumber (Gy14) v2	carcgybB0098
Carg18310	MELO3C023845.2	Melon (DHL92) v3.6.1	carmedB0091
Carg18310	CsaV3_5G007990	Cucumber (Chinese Long) v3	carcucB0105
Carg18310	Bhi07G000787	Wax gourd	carwgoB0104

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18310	Carg00276	Silver-seed gourd	carcarB099

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18310	Cucurbita moschata (Rifu)	carcmoB0123
Carg18310	Watermelon (97103) v2	carwmbB0091