Carg18210 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18210
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Dof zinc finger protein
Location	Cucurbita_argyrosperma_scaffold_120 : 11446 .. 11961 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGGTTCACTGTAGCAACACTGGTGGAATTAAGCTCTTTGGCACCGTCATCACTTTACAGACCAGAAGCATCAAGGAGGAGCCGGAGAAAGGTGGTGACGGTGGCGGTGGCGATCAACCAGAGATGAAGAGGCCGGAAAAAATAATTCCATGTCCAAGGTGTAAGAGCATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCCAGACATTTCTGCAAGGGTTGTCAAAGGTACTGGACGGCAGGTGGGGCGCTACGGAACGTGCCCATCGGAGCCGGCCGCCGGAGAGCCAAGCCGCCGCTGCCTAATTGTCGAATCCTTTCCGGAGAGCTTCCCGAGGATTATGGGCAGCTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAATTGGATGCGGTGGAGGGGTGGCATCTCACGGTGGCAGAACAGGATTTCGCCCAAGTTTTCCCTCTCAAACGCCAGAAGATTATCGGTCAACACGGTCAAACGTCCTGA

mRNA sequence

ATGGCTGAGGTTCACTGTAGCAACACTGGTGGAATTAAGCTCTTTGGCACCGTCATCACTTTACAGACCAGAAGCATCAAGGAGGAGCCGGAGAAAGGTGGTGACGGTGGCGGTGGCGATCAACCAGAGATGAAGAGGCCGGAAAAAATAATTCCATGTCCAAGGTGTAAGAGCATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCCAGACATTTCTGCAAGGGTTGTCAAAGGTACTGGACGGCAGGTGGGGCGCTACGGAACGTGCCCATCGGAGCCGGCCGCCGGAGAGCCAAGCCGCCGCTGCCTAATTGTCGAATCCTTTCCGGAGAGCTTCCCGAGGATTATGGGCAGCTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAATTGGATGCGGTGGAGGGGTGGCATCTCACGGTGGCAGAACAGGATTTCGCCCAAGTTTTCCCTCTCAAACGCCAGAAGATTATCGGTCAACACGGTCAAACGTCCTGA

Coding sequence (CDS)

ATGGCTGAGGTTCACTGTAGCAACACTGGTGGAATTAAGCTCTTTGGCACCGTCATCACTTTACAGACCAGAAGCATCAAGGAGGAGCCGGAGAAAGGTGGTGACGGTGGCGGTGGCGATCAACCAGAGATGAAGAGGCCGGAAAAAATAATTCCATGTCCAAGGTGTAAGAGCATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCCAGACATTTCTGCAAGGGTTGTCAAAGGTACTGGACGGCAGGTGGGGCGCTACGGAACGTGCCCATCGGAGCCGGCCGCCGGAGAGCCAAGCCGCCGCTGCCTAATTGTCGAATCCTTTCCGGAGAGCTTCCCGAGGATTATGGGCAGCTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAATTGGATGCGGTGGAGGGGTGGCATCTCACGGTGGCAGAACAGGATTTCGCCCAAGTTTTCCCTCTCAAACGCCAGAAGATTATCGGTCAACACGGTCAAACGTCCTGA

Protein sequence

MAEVHCSNTGGIKLFGTVITLQTRSIKEEPEKGGDGGGGDQPEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPEDYGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKIIGQHGQTS

Homology

[Close]

BLAST of Carg18210 vs. NCBI nr
Match: XP_022926649.1 (dof zinc finger protein DOF1.5-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 369.8 bits (948), Expect = 5.1e-99
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MAEVHCSNTGGIKLFGTVITLQTRSIKEEPEKGGDGGGGDQPEMKRPEKIIPCPRCKSMD 60
           MAEVHCSNTGGIKLFGTVITLQTRSIKEEPEKGGDGGGGDQPEMKRPEKIIPCPRCKSMD
Sbjct: 52  MAEVHCSNTGGIKLFGTVITLQTRSIKEEPEKGGDGGGGDQPEMKRPEKIIPCPRCKSMD 111

Query: 61  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED 120
           TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED
Sbjct: 112 TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED 171

Query: 121 YGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKIIGQHGQTS 172
           YGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKIIGQHGQTS
Sbjct: 172 YGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKIIGQHGQTS 222

[Close]

BLAST of Carg18210 vs. NCBI nr
Match: XP_022926650.1 (dof zinc finger protein DOF1.5-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 369.8 bits (948), Expect = 5.1e-99
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MAEVHCSNTGGIKLFGTVITLQTRSIKEEPEKGGDGGGGDQPEMKRPEKIIPCPRCKSMD 60
           MAEVHCSNTGGIKLFGTVITLQTRSIKEEPEKGGDGGGGDQPEMKRPEKIIPCPRCKSMD
Sbjct: 1   MAEVHCSNTGGIKLFGTVITLQTRSIKEEPEKGGDGGGGDQPEMKRPEKIIPCPRCKSMD 60

Query: 61  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED 120
           TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED
Sbjct: 61  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED 120

Query: 121 YGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKIIGQHGQTS 172
           YGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKIIGQHGQTS
Sbjct: 121 YGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKIIGQHGQTS 171

[Close]

BLAST of Carg18210 vs. NCBI nr
Match: XP_023517358.1 (dof zinc finger protein DOF1.5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357.1 bits (915), Expect = 3.4e-95
Identity = 167/171 (97.66%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MAEVHCSNTGGIKLFGTVITLQTRSIKEEPEKGGDGGGGDQPEMKRPEKIIPCPRCKSMD 60
           MAEVHCSNTGGIKLFGTVI LQTRSIKEEPEKG  GGGGDQPEMKRPEKIIPCPRCKSMD
Sbjct: 1   MAEVHCSNTGGIKLFGTVINLQTRSIKEEPEKG--GGGGDQPEMKRPEKIIPCPRCKSMD 60

Query: 61  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED 120
           TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED
Sbjct: 61  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED 120

Query: 121 YGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKIIGQHGQTS 172
           YGQLYDAASGIIHQLELDAVEGWH TVAEQDFAQVFPLKRQKIIGQHGQTS
Sbjct: 121 YGQLYDAASGIIHQLELDAVEGWHFTVAEQDFAQVFPLKRQKIIGQHGQTS 169

[Close]

BLAST of Carg18210 vs. NCBI nr
Match: XP_023003300.1 (dof zinc finger protein DOF1.5-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 328.6 bits (841), Expect = 1.3e-86
Identity = 158/171 (92.40%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1   MAEVHCSNTGGIKLFGTVITLQTRSIKEEPEKGGDGGGGDQPEMKRPEKIIPCPRCKSMD 60
           MAEVHCSN GGIKLFGTVITLQTRSIKEEP          QPEMKRPEKIIPCPRCKSMD
Sbjct: 1   MAEVHCSNAGGIKLFGTVITLQTRSIKEEP-XXXXXXXXXQPEMKRPEKIIPCPRCKSMD 60

Query: 61  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED 120
           TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED
Sbjct: 61  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED 120

Query: 121 YGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKIIGQHGQTS 172
           YGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKI  QHGQTS
Sbjct: 121 YGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKI--QHGQTS 168

[Close]

BLAST of Carg18210 vs. NCBI nr
Match: XP_023003299.1 (dof zinc finger protein DOF1.5-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 328.6 bits (841), Expect = 1.3e-86
Identity = 158/171 (92.40%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1   MAEVHCSNTGGIKLFGTVITLQTRSIKEEPEKGGDGGGGDQPEMKRPEKIIPCPRCKSMD 60
           MAEVHCSN GGIKLFGTVITLQTRSIKEEP          QPEMKRPEKIIPCPRCKSMD
Sbjct: 56  MAEVHCSNAGGIKLFGTVITLQTRSIKEEP-XXXXXXXXXQPEMKRPEKIIPCPRCKSMD 115

Query: 61  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED 120
           TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED
Sbjct: 116 TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED 175

Query: 121 YGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKIIGQHGQTS 172
           YGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKI  QHGQTS
Sbjct: 176 YGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKI--QHGQTS 223

[Close]

BLAST of Carg18210 vs. TAIR10
Match: AT1G29160.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 160.6 bits (405), Expect = 8.5e-40
Identity = 88/167 (52.69%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 11  GIKLFGTVITLQ---TRSIKE-----------EPEKGGDGGGGDQPEMKRPEKIIPCPRC 70
           GIKLFG  IT     T++IK            +          D    KRP+KIIPCPRC
Sbjct: 8   GIKLFGKTITFNANITQTIKXXXXXXXXXXXLQATTAVRSPSSDLTAEKRPDKIIPCPRC 67

Query: 71  KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGE 130
           KSM+TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP+GAGRR++KPP        G 
Sbjct: 68  KSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPP--------GR 127

Query: 131 LPEDYGQLYDAASGIIHQLELDA--VEGWH-LTVAEQDFAQVFPLKR 161
           +   + +L  AA+G + Q+ELDA  VE W   T +   F   FP+KR
Sbjct: 128 V-GGFAELLGAATGAVDQVELDALLVEEWRAATASHGGFRHDFPVKR 165

[Close]

BLAST of Carg18210 vs. TAIR10
Match: AT2G34140.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 155.6 bits (392), Expect = 2.7e-38
Identity = 86/165 (52.12%), Postives = 99/165 (60.00%), Query Frame = 0


Query: 11  GIKLFGTVITLQTRSIKEE-----PEKGG-----DGGGGDQPEMKRPEKIIPCPRCKSMD 70
           GIKLFG  I   TR+IK E     PE+            D    KRP+KII CPRCKSM+
Sbjct: 8   GIKLFGKTIAFNTRTIKNEEETHPPEQEATIAVRSSSSSDLTAEKRPDKIIACPRCKSME 67

Query: 71  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED 130
           TKFCYFNNYNVNQPRHFCKGC RYWTAGGALRNVP+GAGRR++KPP    R++ G L + 
Sbjct: 68  TKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSKPP---GRVVVGMLGDG 127

Query: 131 YGQLYDAASGIIHQLELD---AVEGWH--LTVAEQDFAQVFPLKR 161
            G         + Q+EL     VE W      A   F   FP+KR
Sbjct: 128 NG---------VRQVELINGLLVEEWQHAAAAAHGSFRHDFPMKR 160

[Close]

BLAST of Carg18210 vs. TAIR10
Match: AT5G62430.1 (cycling DOF factor 1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-30
Identity = 65/125 (52.00%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 12  IKLFGTVITLQT--RSIKEEPEKGGDGGGGDQPE----MKRPEKIIPCPRCKSMDTKFCY 71
           IKLFG  I   T      EE EK  +    DQ E    +K+P KI+PCPRC SM+TKFCY
Sbjct: 9   IKLFGMKIPFPTVLEVADEEEEKNQNKTLTDQSEKDKTLKKPTKILPCPRCNSMETKFCY 68

Query: 72  FNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPEDYGQLY 131
           +NNYNVNQPRHFCK CQRYWT+GG +R+VPIGAGRR+ K   P        + E  G + 
Sbjct: 69  YNNYNVNQPRHFCKACQRYWTSGGTMRSVPIGAGRRKNKNNSPTSHYHHVTISETNGPVL 128

[Close]

BLAST of Carg18210 vs. TAIR10
Match: AT5G39660.1 (cycling DOF factor 2)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-29
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 31  EKGGDGGGGDQPEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGA 90
           E+ G      + ++K+P+KI+PCPRC SM+TKFCY+NNYNVNQPRHFCK CQRYWTAGG 
Sbjct: 118 EESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGT 177

Query: 91  LRNVPIGAGRRRAKPP 107
           +RNVP+GAGRR+ K P
Sbjct: 178 MRNVPVGAGRRKNKSP 193

[Close]

BLAST of Carg18210 vs. TAIR10
Match: AT3G47500.1 (cycling DOF factor 3)

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-29
Identity = 48/61 (78.69%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 44  MKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRA 103
           +K+P KI+PCPRCKSM+TKFCY+NNYN+NQPRHFCK CQRYWTAGG +RNVP+GAGRR+ 
Sbjct: 103 LKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKN 162

Query: 104 K 105
           K
Sbjct: 163 K 163

[Close]

BLAST of Carg18210 vs. Swiss-Prot
Match: sp|P68350|DOF15_ARATH (Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana OX=3702 GN=DOF1.5 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-38
Identity = 88/167 (52.69%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 11  GIKLFGTVITLQ---TRSIKE-----------EPEKGGDGGGGDQPEMKRPEKIIPCPRC 70
           GIKLFG  IT     T++IK            +          D    KRP+KIIPCPRC
Sbjct: 8   GIKLFGKTITFNANITQTIKXXXXXXXXXXXLQATTAVRSPSSDLTAEKRPDKIIPCPRC 67

Query: 71  KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGE 130
           KSM+TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP+GAGRR++KPP        G 
Sbjct: 68  KSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPP--------GR 127

Query: 131 LPEDYGQLYDAASGIIHQLELDA--VEGWH-LTVAEQDFAQVFPLKR 161
           +   + +L  AA+G + Q+ELDA  VE W   T +   F   FP+KR
Sbjct: 128 V-GGFAELLGAATGAVDQVELDALLVEEWRAATASHGGFRHDFPVKR 165

[Close]

BLAST of Carg18210 vs. Swiss-Prot
Match: sp|O22967|CDF4_ARATH (Cyclic dof factor 4 OS=Arabidopsis thaliana OX=3702 GN=CDF4 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.9e-37
Identity = 86/165 (52.12%), Postives = 99/165 (60.00%), Query Frame = 0


Query: 11  GIKLFGTVITLQTRSIKEE-----PEKGG-----DGGGGDQPEMKRPEKIIPCPRCKSMD 70
           GIKLFG  I   TR+IK E     PE+            D    KRP+KII CPRCKSM+
Sbjct: 8   GIKLFGKTIAFNTRTIKNEEETHPPEQEATIAVRSSSSSDLTAEKRPDKIIACPRCKSME 67

Query: 71  TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPED 130
           TKFCYFNNYNVNQPRHFCKGC RYWTAGGALRNVP+GAGRR++KPP    R++ G L + 
Sbjct: 68  TKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSKPP---GRVVVGMLGDG 127

Query: 131 YGQLYDAASGIIHQLELD---AVEGWH--LTVAEQDFAQVFPLKR 161
            G         + Q+EL     VE W      A   F   FP+KR
Sbjct: 128 NG---------VRQVELINGLLVEEWQHAAAAAHGSFRHDFPMKR 160

[Close]

BLAST of Carg18210 vs. Swiss-Prot
Match: sp|Q8W1E3|CDF1_ARATH (Cyclic dof factor 1 OS=Arabidopsis thaliana OX=3702 GN=CDF1 PE=1 SV=2)

HSP 1 Score: 129.4 bits (324), Expect = 3.8e-29
Identity = 65/125 (52.00%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 12  IKLFGTVITLQT--RSIKEEPEKGGDGGGGDQPE----MKRPEKIIPCPRCKSMDTKFCY 71
           IKLFG  I   T      EE EK  +    DQ E    +K+P KI+PCPRC SM+TKFCY
Sbjct: 9   IKLFGMKIPFPTVLEVADEEEEKNQNKTLTDQSEKDKTLKKPTKILPCPRCNSMETKFCY 68

Query: 72  FNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPEDYGQLY 131
           +NNYNVNQPRHFCK CQRYWT+GG +R+VPIGAGRR+ K   P        + E  G + 
Sbjct: 69  YNNYNVNQPRHFCKACQRYWTSGGTMRSVPIGAGRRKNKNNSPTSHYHHVTISETNGPVL 128

[Close]

BLAST of Carg18210 vs. Swiss-Prot
Match: sp|Q93ZL5|CDF2_ARATH (Cyclic dof factor 2 OS=Arabidopsis thaliana OX=3702 GN=CDF2 PE=1 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 31  EKGGDGGGGDQPEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGA 90
           E+ G      + ++K+P+KI+PCPRC SM+TKFCY+NNYNVNQPRHFCK CQRYWTAGG 
Sbjct: 118 EESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGT 177

Query: 91  LRNVPIGAGRRRAKPP 107
           +RNVP+GAGRR+ K P
Sbjct: 178 MRNVPVGAGRRKNKSP 193

[Close]

BLAST of Carg18210 vs. Swiss-Prot
Match: sp|Q8LFV3|CDF3_ARATH (Cyclic dof factor 3 OS=Arabidopsis thaliana OX=3702 GN=CDF3 PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-27
Identity = 48/61 (78.69%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 44  MKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRA 103
           +K+P KI+PCPRCKSM+TKFCY+NNYN+NQPRHFCK CQRYWTAGG +RNVP+GAGRR+ 
Sbjct: 103 LKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKN 162

Query: 104 K 105
           K
Sbjct: 163 K 163

[Close]

BLAST of Carg18210 vs. TrEMBL
Match: tr|A0A1S3CSQ8|A0A1S3CSQ8_CUCME (dof zinc finger protein DOF1.5-like OS=Cucumis melo OX=3656 GN=LOC103504446 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 2.3e-84
Identity = 152/174 (87.36%), Postives = 157/174 (90.23%), Query Frame = 0


Query: 1   MAEVHCSNTGGIKLFGTVITLQTRSIKEEPEKGG---DGGGGDQPEMKRPEKIIPCPRCK 60
           MAEVH SN  GIKLFGT+I LQTR +KEEPEKGG    GG GD+ EMKRPEKIIPCPRCK
Sbjct: 1   MAEVHSSNADGIKLFGTMIHLQTRKLKEEPEKGGPVAGGGEGDETEMKRPEKIIPCPRCK 60

Query: 61  SMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGEL 120
           SMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPP PNCR LSGEL
Sbjct: 61  SMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPP-PNCRTLSGEL 120

Query: 121 PEDYGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKIIGQHGQTS 172
            EDYGQ YDAASGIIHQLELDAVEGWHLTVAEQDF +VFP KR+KIIGQHGQTS
Sbjct: 121 SEDYGQYYDAASGIIHQLELDAVEGWHLTVAEQDFTKVFPFKRRKIIGQHGQTS 173

[Close]

BLAST of Carg18210 vs. TrEMBL
Match: tr|A0A0A0KKD0|A0A0A0KKD0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519570 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 4.0e-84
Identity = 151/174 (86.78%), Postives = 157/174 (90.23%), Query Frame = 0


Query: 1   MAEVHCSNTGGIKLFGTVITLQTRSIKEEPEKGGD---GGGGDQPEMKRPEKIIPCPRCK 60
           MAEVH SNT GIKLFGT+I LQTR +KEEPEKGG    GG GD+ EMKRPEKIIPCPRCK
Sbjct: 1   MAEVHSSNTDGIKLFGTMIHLQTRKLKEEPEKGGSVAGGGEGDETEMKRPEKIIPCPRCK 60

Query: 61  SMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGEL 120
           SMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPP PNCR LSGEL
Sbjct: 61  SMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPP-PNCRTLSGEL 120

Query: 121 PEDYGQLYDAASGIIHQLELDAVEGWHLTVAEQDFAQVFPLKRQKIIGQHGQTS 172
            EDYGQ YDAASGIIHQLELD VEGWHLTVAEQDF +VFP KR+KIIGQHGQ+S
Sbjct: 121 SEDYGQYYDAASGIIHQLELDTVEGWHLTVAEQDFTKVFPFKRRKIIGQHGQSS 173

[Close]

BLAST of Carg18210 vs. TrEMBL
Match: tr|A0A2P5AXV4|A0A2P5AXV4_PARAD (Zinc finger, Dof-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290380 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 7.1e-49
Identity = 105/166 (63.25%), Postives = 122/166 (73.49%), Query Frame = 0


Query: 8   NTGGIKLFGTVITLQT--RSIKEEPEKGGDGGGGDQPEMKRPEKIIPCPRCKSMDTKFCY 67
           +  GIKLFGT ITLQ   + IKEEP+K          EMKRPEKIIPCPRCKSM+TKFCY
Sbjct: 9   DVAGIKLFGTTITLQNSRQVIKEEPKK-----ADPTVEMKRPEKIIPCPRCKSMETKFCY 68

Query: 68  FNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPEDYGQLY 127
           FNNYNVNQPRHFCKGCQRYWTAGGALRNVP+GAGRR+AKPP   CR ++  LPED   LY
Sbjct: 69  FNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPP---CRGMA-SLPEDC--LY 128

Query: 128 DAASGIIHQLELDA-VEGWHLTVAEQDFAQVFPLKRQKIIGQHGQT 171
           D AS ++HQ +LD  VE WH+  A+  F  VFP+ +++  G   QT
Sbjct: 129 D-ASEVVHQFDLDGMVEEWHVAAAQGGFRHVFPVVKRRRSGSGSQT 162

[Close]

BLAST of Carg18210 vs. TrEMBL
Match: tr|M5X2T0|M5X2T0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G061400 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.1e-48
Identity = 105/173 (60.69%), Postives = 126/173 (72.83%), Query Frame = 0


Query: 1   MAEV-HCSNTGGIKLFGTVITLQTR-SIKEEPEKGGDGGGGDQPEMKRPEKIIPCPRCKS 60
           MAEV +  +  GIKLFGT ITLQ R  +KEEP+K       DQ   KRP++IIPCPRCKS
Sbjct: 1   MAEVQNGQDVPGIKLFGTTITLQNRPQVKEEPKK------ADQTAEKRPDRIIPCPRCKS 60

Query: 61  MDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELP 120
           M+TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP+GAGRR+ KPP   CR L+G  P
Sbjct: 61  METKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPP---CRGLAG-FP 120

Query: 121 EDYGQLYDAASGIIHQLELDAV-EGWHLTVAEQDFAQVFPLKRQKIIGQHGQT 171
           E    +Y+ +S ++HQ ELD V E WH+  A+  F QVFP+ +++     GQT
Sbjct: 121 E--ACIYE-SSEVVHQFELDGVMEEWHMAAAQGGFHQVFPVVKRRRSSSGGQT 160

[Close]

BLAST of Carg18210 vs. TrEMBL
Match: tr|A0A2P5DKJ5|A0A2P5DKJ5_9ROSA (Zinc finger, Dof-type OS=Trema orientalis OX=63057 GN=TorRG33x02_248450 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.1e-48
Identity = 105/163 (64.42%), Postives = 120/163 (73.62%), Query Frame = 0


Query: 11  GIKLFGTVITLQT--RSIKEEPEKGGDGGGGDQPEMKRPEKIIPCPRCKSMDTKFCYFNN 70
           GIKLFGT ITLQ   + IKEEP+K          EMKRPEKIIPCPRCKSM+TKFCYFNN
Sbjct: 12  GIKLFGTTITLQNSRQVIKEEPKK-----ADPTVEMKRPEKIIPCPRCKSMETKFCYFNN 71

Query: 71  YNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPLPNCRILSGELPEDYGQLYDAA 130
           YNVNQPRHFCKGCQRYWTAGGALRNVP+GAGRR+ KPP   CR L+  LPED   LYD A
Sbjct: 72  YNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPP---CRGLAA-LPEDC--LYD-A 131

Query: 131 SGIIHQLELDA-VEGWHLTVAEQDFAQVFPLKRQKIIGQHGQT 171
           S ++HQ +LD  VE WH+  A+  F  VFP+ +++  G   QT
Sbjct: 132 SEVVHQFDLDGMVEEWHVAAAQGGFRHVFPVVKRRRSGSGSQT 162

The following BLAST results are available for this feature:

BLAST of Carg18210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926649.1	5.1e-99	100.00	dof zinc finger protein DOF1.5-like isoform X1 [Cucurbita moschata]	[more]
XP_022926650.1	5.1e-99	100.00	dof zinc finger protein DOF1.5-like isoform X2 [Cucurbita moschata]	[more]
XP_023517358.1	3.4e-95	97.66	dof zinc finger protein DOF1.5-like [Cucurbita pepo subsp. pepo]	[more]
XP_023003300.1	1.3e-86	92.40	dof zinc finger protein DOF1.5-like isoform X2 [Cucurbita maxima]	[more]
XP_023003299.1	1.3e-86	92.40	dof zinc finger protein DOF1.5-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg18210 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G29160.1	8.5e-40	52.69	Dof-type zinc finger DNA-binding family protein	[more]
AT2G34140.1	2.7e-38	52.12	Dof-type zinc finger DNA-binding family protein	[more]
AT5G62430.1	2.1e-30	52.00	cycling DOF factor 1	[more]
AT5G39660.1	1.4e-29	67.11	cycling DOF factor 2	[more]
AT3G47500.1	6.7e-29	78.69	cycling DOF factor 3	[more]

BLAST of Carg18210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P68350\|DOF15_ARATH	1.5e-38	52.69	Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana OX=3702 GN=DOF1.5 PE=1 SV...	[more]
sp\|O22967\|CDF4_ARATH	4.9e-37	52.12	Cyclic dof factor 4 OS=Arabidopsis thaliana OX=3702 GN=CDF4 PE=2 SV=1	[more]
sp\|Q8W1E3\|CDF1_ARATH	3.8e-29	52.00	Cyclic dof factor 1 OS=Arabidopsis thaliana OX=3702 GN=CDF1 PE=1 SV=2	[more]
sp\|Q93ZL5\|CDF2_ARATH	2.4e-28	67.11	Cyclic dof factor 2 OS=Arabidopsis thaliana OX=3702 GN=CDF2 PE=1 SV=2	[more]
sp\|Q8LFV3\|CDF3_ARATH	1.2e-27	78.69	Cyclic dof factor 3 OS=Arabidopsis thaliana OX=3702 GN=CDF3 PE=1 SV=2	[more]

BLAST of Carg18210 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CSQ8\|A0A1S3CSQ8_CUCME	2.3e-84	87.36	dof zinc finger protein DOF1.5-like OS=Cucumis melo OX=3656 GN=LOC103504446 PE=4...	[more]
tr\|A0A0A0KKD0\|A0A0A0KKD0_CUCSA	4.0e-84	86.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519570 PE=4 SV=1	[more]
tr\|A0A2P5AXV4\|A0A2P5AXV4_PARAD	7.1e-49	63.25	Zinc finger, Dof-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290380 PE=4...	[more]
tr\|M5X2T0\|M5X2T0_PRUPE	2.1e-48	60.69	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G061400 PE=4 SV=1	[more]
tr\|A0A2P5DKJ5\|A0A2P5DKJ5_9ROSA	2.1e-48	64.42	Zinc finger, Dof-type OS=Trema orientalis OX=63057 GN=TorRG33x02_248450 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR003851	Znf_Dof

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18210-RA	Carg18210-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 49..104 e-value: 1.1E-31 score: 108.7
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 53..89
IPR003851	Zinc finger, Dof-type	PRODOM	PD007478		coord: 46..104 e-value: 2.0E-28 score: 311.0
IPR003851	Zinc finger, Dof-type	PROSITE	PS50884	ZF_DOF_2	coord: 51..105 score: 28.239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..47
None	No IPR available	PANTHER	PTHR31089	FAMILY NOT NAMED	coord: 40..167
None	No IPR available	PANTHER	PTHR31089:SF14	CYCLIC DOF FACTOR 4-RELATED	coord: 40..167

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18210	Cla009692	Watermelon (97103) v1	carwmB0525
Carg18210	Csa6G519570	Cucumber (Chinese Long) v2	carcuB0558
Carg18210	ClCG01G023730	Watermelon (Charleston Gray)	carwcgB0511
Carg18210	Cucsa.046960	Cucumber (Gy14) v1	carcgyB0605
Carg18210	CmaCh07G001890	Cucurbita maxima (Rimu)	carcmaB0739
Carg18210	CmoCh03G013220	Cucurbita moschata (Rifu)	carcmoB0715
Carg18210	CmoCh07G001840	Cucurbita moschata (Rifu)	carcmoB0717
Carg18210	Lsi01G002430	Bottle gourd (USVL1VR-Ls)	carlsiB481
Carg18210	Cp4.1LG19g06650	Cucurbita pepo (Zucchini)	carcpeB0748
Carg18210	Cp4.1LG10g05410	Cucurbita pepo (Zucchini)	carcpeB0745
Carg18210	CsGy6G034890	Cucumber (Gy14) v2	carcgybB0535
Carg18210	CsaV3_6G050890	Cucumber (Chinese Long) v3	carcucB0566
Carg18210	Cla97C01G023670	Watermelon (97103) v2	carwmbB0552

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18210	Carg15343	Silver-seed gourd	carcarB499

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18210	Wax gourd	carwgoB0638
Carg18210	Wild cucumber (PI 183967)	carcpiB0564