Carg18182 (gene) Silver-seed gourd

Overview
NameCarg18182
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptiontranscription factor bHLH47
LocationCucurbita_argyrosperma_scaffold_136 : 296654 .. 298012 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCCGAGGTTCCTTCACAACCGGTTATTGAAACTGATGTTGCAGATGTGGCTTCTGTATCTAGGTAACTCTTCATGATTCTTAATTGTAAAACTTACGTTGTTGAATGTTCTGAATGTCTGAAATGCATAAACTAAACAATTACTGCATCGATGGTAGAATGTGGAATGCATTTGTTGATATGCTAAGGATGATGTTTTTGGGTAATTTGTGGTGGGTTTGTTTAGCTGTTTTAAGATTGAAGTTTAAGCTGGTTCTTTATGCAGGCAATGTCCTGGTAAAAAAAATCCGGCGAAAGTTCCTAAGAAAATTCACAAGGCAGAGAGGGAGAAGTTGAAGCGAGGGCATTTAAACGATCTCTTCCTTCACCTCGCAAATGTGCTTGGTAATATGCTCCCAATTACCATTCGGTAGAATATTAAGATATTCTCAGCTGTTCTCATACTTGGAATGGTCATCTGCAGAGCTAACAGAACCGAACAATGGGAAGGCGTCCATTTTGTGTGAAGCAAATCGACTGGTAAAGGACTTATTTGGTCAGATTGAGTGCCTCAGAAAGGAGCATGCATCGTTGTTGACAGAATCTAGAGATGTAAGGCTCATAAATACACCATTACTCTTTCTTAGAATTGAGAGTAAAAGGTCTCTAAATAGATGACAAATTGCACGAATTATCACACAGGTTGACATTGAGAAGAATGAGCTGCGAGAAGAGACTTCTGCTTTAGCATCTCAGATTGAGAAGCTGCAAAGTGAGTTACAATCAAGGGCCGTGCATTCTAAACCCGACTTAAATACCACTCCACCACAAGCACATTTCTCAGGGGAATGCCTTGGATTGCCTGTTATGGAACCCACAATGCAGCAAACACACGCGGTTATTATCGTCCCCGTGCGGCCGGATCTCCCATCTTATCCAGCAGCGGATGCAACTCAAGCCCCAACAATGGCTACCTCACATGTAACCAAACCACATGCCAGATATCCAACACCAGCAGATTCCTGGCCTGCTGGACTTCTCAAATTGTCACAAACAACAGAACAACCAAGTAAAGAGTTTTTAACCATTGGTTGCAAGAGCATTACGGATATTATGGGTTAAAGAGGCCCTGAAAGAACTGAGAGCTGATCTTTGTAGTGACCTCTTTTGTAGATAATTTGTAGTATAAATTTGTCTCTAGGATGTTGGATTCGAACAAGTTAATGAATCTGCAACTGGGTTCTGTATCTTCTCCGAAAAACACTGCTTCATTTCCCTGTTTTTCAAGCTTTATTCAATCTGGATGTATTTTTTTTACCAAACCTGCTAAATTATGAAATCAAAAAGGATATTTGGAAGGTGTGAACAAAAATGA

mRNA sequence

ATGGTTTCCGAGGTTCCTTCACAACCGGTTATTGAAACTGATGTTGCAGATGTGGCTTCTGTATCTAGGCAATGTCCTGGTAAAAAAAATCCGGCGAAAGTTCCTAAGAAAATTCACAAGGCAGAGAGGGAGAAGTTGAAGCGAGGGCATTTAAACGATCTCTTCCTTCACCTCGCAAATGTGCTTGAGCTAACAGAACCGAACAATGGGAAGGCGTCCATTTTGTGTGAAGCAAATCGACTGGTAAAGGACTTATTTGGTCAGATTGAGTGCCTCAGAAAGGAGCATGCATCGTTGTTGACAGAATCTAGAGATGTTGACATTGAGAAGAATGAGCTGCGAGAAGAGACTTCTGCTTTAGCATCTCAGATTGAGAAGCTGCAAAGTGAGTTACAATCAAGGGCCGTGCATTCTAAACCCGACTTAAATACCACTCCACCACAAGCACATTTCTCAGGGGAATGCCTTGGATTGCCTGTTATGGAACCCACAATGCAGCAAACACACGCGGTTATTATCGTCCCCGTGCGGCCGGATCTCCCATCTTATCCAGCAGCGGATGCAACTCAAGCCCCAACAATGGCTACCTCACATGTAACCAAACCACATGCCAGATATCCAACACCAGCAGATTCCTGGCCTGCTGGACTTCTCAAATTGTCACAAACAACAGAACAACCAAGTAAAGAGTTTTTAACCATTGGTTGCAAGAGCATTACGGATATTATGGGTTAAAGAGGCCCTGAAAGAACTGAGAGCTGATCTTTGTAGTGACCTCTTTTGTAGATAATTTGTAGTATAAATTTGTCTCTAGGATGTTGGATTCGAACAAGTTAATGAATCTGCAACTGGGTTCTGTATCTTCTCCGAAAAACACTGCTTCATTTCCCTGTTTTTCAAGCTTTATTCAATCTGGATGTATTTTTTTTACCAAACCTGCTAAATTATGAAATCAAAAAGGATATTTGGAAGGTGTGAACAAAAATGA

Coding sequence (CDS)

ATGGTTTCCGAGGTTCCTTCACAACCGGTTATTGAAACTGATGTTGCAGATGTGGCTTCTGTATCTAGGCAATGTCCTGGTAAAAAAAATCCGGCGAAAGTTCCTAAGAAAATTCACAAGGCAGAGAGGGAGAAGTTGAAGCGAGGGCATTTAAACGATCTCTTCCTTCACCTCGCAAATGTGCTTGAGCTAACAGAACCGAACAATGGGAAGGCGTCCATTTTGTGTGAAGCAAATCGACTGGTAAAGGACTTATTTGGTCAGATTGAGTGCCTCAGAAAGGAGCATGCATCGTTGTTGACAGAATCTAGAGATGTTGACATTGAGAAGAATGAGCTGCGAGAAGAGACTTCTGCTTTAGCATCTCAGATTGAGAAGCTGCAAAGTGAGTTACAATCAAGGGCCGTGCATTCTAAACCCGACTTAAATACCACTCCACCACAAGCACATTTCTCAGGGGAATGCCTTGGATTGCCTGTTATGGAACCCACAATGCAGCAAACACACGCGGTTATTATCGTCCCCGTGCGGCCGGATCTCCCATCTTATCCAGCAGCGGATGCAACTCAAGCCCCAACAATGGCTACCTCACATGTAACCAAACCACATGCCAGATATCCAACACCAGCAGATTCCTGGCCTGCTGGACTTCTCAAATTGTCACAAACAACAGAACAACCAAGTAAAGAGTTTTTAACCATTGGTTGCAAGAGCATTACGGATATTATGGGTTAA

Protein sequence

MVSEVPSQPVIETDVADVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLANVLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSALASQIEKLQSELQSRAVHSKPDLNTTPPQAHFSGECLGLPVMEPTMQQTHAVIIVPVRPDLPSYPAADATQAPTMATSHVTKPHARYPTPADSWPAGLLKLSQTTEQPSKEFLTIGCKSITDIMG
Homology
[Close]
BLAST of Carg18182 vs. NCBI nr
Match: XP_022931022.1 (transcription factor bHLH47-like [Cucurbita moschata])

HSP 1 Score: 478.4 bits (1230), Expect = 1.4e-131
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0 

Query: 1   MVSEVPSQPVIETDVADVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN 60
           MVSEVPSQPVIETDVADVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN
Sbjct: 1   MVSEVPSQPVIETDVADVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN 60

Query: 61  VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL 120
           VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL
Sbjct: 61  VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL 120

Query: 121 ASQIEKLQSELQSRAVHSKPDLNTTPPQAHFSGECLGLPVMEPTMQQTHAVIIVPVRPDL 180
           ASQIEKLQSELQSRAVHSKPDLNTTPPQAHFSGECLGLPVMEPTMQQTHAVIIVPVRPDL
Sbjct: 121 ASQIEKLQSELQSRAVHSKPDLNTTPPQAHFSGECLGLPVMEPTMQQTHAVIIVPVRPDL 180

Query: 181 PSYPAADATQAPTMATSHVTKPHARYPTPADSWPAGLLKLSQTTEQPSKEFLTIGCKSIT 240
           PSYPAADATQAPTMATSHVTKPHARYPTPADSWPAGLLKLSQTTEQPSKEFLTIGCKSIT
Sbjct: 181 PSYPAADATQAPTMATSHVTKPHARYPTPADSWPAGLLKLSQTTEQPSKEFLTIGCKSIT 240

Query: 241 DIMG 245
           DIMG
Sbjct: 241 DIMG 244

[Close]
BLAST of Carg18182 vs. NCBI nr
Match: XP_023530170.1 (transcription factor bHLH47-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 468.0 bits (1203), Expect = 2.0e-128
Identity = 240/244 (98.36%), Postives = 241/244 (98.77%), Query Frame = 0 

Query: 1   MVSEVPSQPVIETDVADVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN 60
           MVSEV SQPVIETDVA VASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN
Sbjct: 1   MVSEVSSQPVIETDVAVVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN 60

Query: 61  VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL 120
           VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL
Sbjct: 61  VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL 120

Query: 121 ASQIEKLQSELQSRAVHSKPDLNTTPPQAHFSGECLGLPVMEPTMQQTHAVIIVPVRPDL 180
           ASQIEKLQSELQSRAVHSKPDLNT PPQAHFSGECLGLPVMEPTMQQTHAVIIVPVRPDL
Sbjct: 121 ASQIEKLQSELQSRAVHSKPDLNTIPPQAHFSGECLGLPVMEPTMQQTHAVIIVPVRPDL 180

Query: 181 PSYPAADATQAPTMATSHVTKPHARYPTPADSWPAGLLKLSQTTEQPSKEFLTIGCKSIT 240
           PSYPAADATQAPTMATSHV+KPHARYPTPADSWPAGLLKLSQTTEQPSKEFLTIGCKSIT
Sbjct: 181 PSYPAADATQAPTMATSHVSKPHARYPTPADSWPAGLLKLSQTTEQPSKEFLTIGCKSIT 240

Query: 241 DIMG 245
           DIMG
Sbjct: 241 DIMG 244

[Close]
BLAST of Carg18182 vs. NCBI nr
Match: XP_022972931.1 (transcription factor bHLH47-like [Cucurbita maxima])

HSP 1 Score: 456.8 bits (1174), Expect = 4.5e-125
Identity = 234/244 (95.90%), Postives = 238/244 (97.54%), Query Frame = 0 

Query: 1   MVSEVPSQPVIETDVADVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN 60
           MVSEVPSQPVIETDVA VASVSRQCPGKKNP KVPKK+HKAEREKLKRGHLNDLFLHLAN
Sbjct: 1   MVSEVPSQPVIETDVAVVASVSRQCPGKKNPVKVPKKVHKAEREKLKRGHLNDLFLHLAN 60

Query: 61  VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL 120
           VLELT PNNGKASILCEANRL+KDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL
Sbjct: 61  VLELTVPNNGKASILCEANRLLKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL 120

Query: 121 ASQIEKLQSELQSRAVHSKPDLNTTPPQAHFSGECLGLPVMEPTMQQTHAVIIVPVRPDL 180
           ASQIEKLQSELQSRAVHSKPDLNTT PQAHFS ECLGLPVMEPTMQQTHAVIIVP+RPDL
Sbjct: 121 ASQIEKLQSELQSRAVHSKPDLNTTRPQAHFSQECLGLPVMEPTMQQTHAVIIVPMRPDL 180

Query: 181 PSYPAADATQAPTMATSHVTKPHARYPTPADSWPAGLLKLSQTTEQPSKEFLTIGCKSIT 240
           PSYPAADATQAPTMATSHV+KPHARYPT ADSWPAGLLKLSQTTEQPSKEFLTIGCKSIT
Sbjct: 181 PSYPAADATQAPTMATSHVSKPHARYPTQADSWPAGLLKLSQTTEQPSKEFLTIGCKSIT 240

Query: 241 DIMG 245
           DIMG
Sbjct: 241 DIMG 244

[Close]
BLAST of Carg18182 vs. NCBI nr
Match: XP_011660048.1 (PREDICTED: transcription factor bHLH47 [Cucumis sativus] >KGN63662.1 hypothetical protein Csa_1G009660 [Cucumis sativus])

HSP 1 Score: 382.9 bits (982), Expect = 8.3e-103
Identity = 204/251 (81.27%), Postives = 214/251 (85.26%), Query Frame = 0 

Query: 1   MVSEVPSQPVIETDVADVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN 60
           MVSEVPS+PV+ETD   +ASVSR  PGKKN  KVPKKIHKAEREKLKR HLNDLFL LAN
Sbjct: 1   MVSEVPSKPVVETDAPVMASVSRNSPGKKNQVKVPKKIHKAEREKLKREHLNDLFLDLAN 60

Query: 61  VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL 120
            LELTEPNNGKASIL EA+RL+KDLFGQIECLRKEHA LL+ESR VDIEK ELREETSAL
Sbjct: 61  ALELTEPNNGKASILSEASRLLKDLFGQIECLRKEHALLLSESRYVDIEKTELREETSAL 120

Query: 121 ASQIEKLQSELQSRAVHSKPDLNTTPPQ---------AHFSGECLGLPVMEPTMQQTHAV 180
           ASQIEKLQSELQSRAVHSKPDLN TPP           HFSGECLGLPVMEPT+QQTHAV
Sbjct: 121 ASQIEKLQSELQSRAVHSKPDLNVTPPSEFPQQGTTVQHFSGECLGLPVMEPTLQQTHAV 180

Query: 181 IIVPVRPDLPSYPAADATQAPTMATSHVTKPHARYPTPADSWPAGLLKLSQTTEQPSKEF 240
            IVPVRPDLPSYPA DAT AP M TSHV+KPHARYPTPADSWPAGLLKLSQTTE  SKE 
Sbjct: 181 FIVPVRPDLPSYPATDATHAPIMPTSHVSKPHARYPTPADSWPAGLLKLSQTTE-ASKEA 240

Query: 241 LTIGCKSITDI 243
           L IGCK+  D+
Sbjct: 241 LAIGCKNFADM 250

[Close]
BLAST of Carg18182 vs. NCBI nr
Match: XP_008453195.1 (PREDICTED: transcription factor bHLH47 [Cucumis melo])

HSP 1 Score: 376.7 bits (966), Expect = 5.9e-101
Identity = 204/252 (80.95%), Postives = 215/252 (85.32%), Query Frame = 0 

Query: 1   MVSEVPSQPVIETDVADVASVSRQC-PGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLA 60
           MVSEVPS+PV+ETD    ASVSR C PGKKN  KVPKKIHKAEREKLKR HLNDLFL LA
Sbjct: 1   MVSEVPSKPVVETD----ASVSRNCPPGKKNQVKVPKKIHKAEREKLKREHLNDLFLDLA 60

Query: 61  NVLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSA 120
           N LELTEPNNGKASIL EA+RL+KDLFGQIECLRKEHASLL+ESR VDIEKNELREETSA
Sbjct: 61  NALELTEPNNGKASILSEASRLLKDLFGQIECLRKEHASLLSESRYVDIEKNELREETSA 120

Query: 121 LASQIEKLQSELQSRAVHSKPDLNTTPPQ---------AHFSGECLGLPVMEPTMQQTHA 180
           LASQIEKLQSELQSRAVHSKPDL  TPP           HFSGECLGLPVMEP++QQTHA
Sbjct: 121 LASQIEKLQSELQSRAVHSKPDLYITPPSEFPQQGTTVQHFSGECLGLPVMEPSLQQTHA 180

Query: 181 VIIVPVRPDLPSYPAADATQAPTMATSHVTKPHARYPTPADSWPAGLLKLSQTTEQPSKE 240
           V IVPVRPDLPSYP  DAT AP M TSHV+KPHARYPTPADSWPAGLLKLSQTTE  +KE
Sbjct: 181 VFIVPVRPDLPSYPGTDATHAPIMPTSHVSKPHARYPTPADSWPAGLLKLSQTTE-ANKE 240

Query: 241 FLTIGCKSITDI 243
            L IGCK+I D+
Sbjct: 241 VLAIGCKNIADM 247

[Close]
BLAST of Carg18182 vs. TAIR10
Match: AT3G47640.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 3.9e-22
Identity = 83/240 (34.58%), Postives = 116/240 (48.33%), Query Frame = 0 

Query: 1   MVSEVPSQPVIETDVADVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN 60
           MVS+ PS    E +    A+   +C       KVPK+I+KA RE+LKR HLN+LF+ LA+
Sbjct: 1   MVSKTPSTSSDEAN----ATADERC----RKGKVPKRINKAVRERLKREHLNELFIELAD 60

Query: 61  VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL 120
            LEL + N+GKASILCEA R +KD+FGQIE LRKEHA                       
Sbjct: 61  TLELNQQNSGKASILCEATRFLKDVFGQIESLRKEHAXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 ASQIEKLQSELQSRAVHSKPDLNTTPPQAHFS-----------GECLGLPVME-PTMQQT 180
                                  T+P   +              +  GLP+ + P  QQ+
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXTSPAPEYXXXXXXXXXPERVSQFPGLPIFQGPGFQQS 180

Query: 181 -------HAVIIVPVRPDLPSYPAADATQA--PTM-ATSHVTKPHARYPTPADSWPAGLL 219
                    V+++P++PD  +   ++ TQA  P M  +S+V+KP  RY + ADSW + LL
Sbjct: 181 ATTLHPPATVLVLPIQPDPQTQDISEMTQAQQPLMFNSSNVSKPCPRYASAADSWSSRLL 232

[Close]
BLAST of Carg18182 vs. TAIR10
Match: AT3G23210.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 43.1 bits (100), Expect = 2.8e-04
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 0 

Query: 24  QCPGK-KNPAKVPKKIHKAEREKLKRGHLNDLFLHLANVLEL-TEPNNGKASILCEANRL 83
           +C GK +      K   KA REKL+R  LND F+ L++VLE    P   K++IL +A R+
Sbjct: 150 ECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRV 209

Query: 84  VKDLFGQIECLRKEHASLL 101
           V  L G+   L++ +  LL
Sbjct: 210 VNQLRGEAHELQETNQKLL 228

[Close]
BLAST of Carg18182 vs. Swiss-Prot
Match: sp|Q69V10|BH062_ORYSJ (Transcription factor BHLH062 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH062 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 81/211 (38.39%), Postives = 110/211 (52.13%), Query Frame = 0 

Query: 28  KKNPAKVPKKIHKAEREKLKRGHLNDLFLHLANVLELTEPNNGKASILCEANRLVKDLFG 87
           KK   K PK+IHK+EREKLKR   NDLF  L N+LE    NNGKA +L E  R++KDL  
Sbjct: 28  KKCDKKAPKRIHKSEREKLKRDKQNDLFNELGNLLEPDRQNNGKACVLGETTRILKDLLS 87

Query: 88  QIECLRKEHASLLTESRDVDIEKNELREETSALASQIEKLQSELQSRA--------VHSK 147
           Q+E LRKE++SL  ES  V +E+NEL ++ S L ++I +LQ+EL++R         V+++
Sbjct: 88  QVESLRKENSSLKNESHYVALERNELHDDNSMLRTEILELQNELRTRMEGNPVWSHVNTR 147

Query: 148 PDLNTT-PPQAHFSGECL---------GLPVMEPTMQQTHAVIIVPVRPDLPSYPAADAT 207
           P L    P    F  + L           P   P + + H     P    L    A    
Sbjct: 148 PALRVPYPTTGVFPVQHLPHLPVTTTAAFPQQLPVIIEQH-YAATPRELQLFPESATSED 207

Query: 208 QAPTM---ATSHVTKPHARYPTPADSWPAGL 218
             P+     + HVT+P  RYPTP  + P  L
Sbjct: 208 SEPSQEHGISDHVTRPQPRYPTPTATLPVNL 237

[Close]
BLAST of Carg18182 vs. Swiss-Prot
Match: sp|Q9SN74|BH047_ARATH (Transcription factor bHLH47 OS=Arabidopsis thaliana OX=3702 GN=BHLH47 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.1e-21
Identity = 83/240 (34.58%), Postives = 116/240 (48.33%), Query Frame = 0 

Query: 1   MVSEVPSQPVIETDVADVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN 60
           MVS+ PS    E +    A+   +C       KVPK+I+KA RE+LKR HLN+LF+ LA+
Sbjct: 1   MVSKTPSTSSDEAN----ATADERC----RKGKVPKRINKAVRERLKREHLNELFIELAD 60

Query: 61  VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL 120
            LEL + N+GKASILCEA R +KD+FGQIE LRKEHA                       
Sbjct: 61  TLELNQQNSGKASILCEATRFLKDVFGQIESLRKEHAXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 ASQIEKLQSELQSRAVHSKPDLNTTPPQAHFS-----------GECLGLPVME-PTMQQT 180
                                  T+P   +              +  GLP+ + P  QQ+
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXTSPAPEYXXXXXXXXXPERVSQFPGLPIFQGPGFQQS 180

Query: 181 -------HAVIIVPVRPDLPSYPAADATQA--PTM-ATSHVTKPHARYPTPADSWPAGLL 219
                    V+++P++PD  +   ++ TQA  P M  +S+V+KP  RY + ADSW + LL
Sbjct: 181 ATTLHPPATVLVLPIQPDPQTQDISEMTQAQQPLMFNSSNVSKPCPRYASAADSWSSRLL 232

[Close]
BLAST of Carg18182 vs. TrEMBL
Match: tr|A0A0A0LSA0|A0A0A0LSA0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009660 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 5.5e-103
Identity = 204/251 (81.27%), Postives = 214/251 (85.26%), Query Frame = 0 

Query: 1   MVSEVPSQPVIETDVADVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN 60
           MVSEVPS+PV+ETD   +ASVSR  PGKKN  KVPKKIHKAEREKLKR HLNDLFL LAN
Sbjct: 1   MVSEVPSKPVVETDAPVMASVSRNSPGKKNQVKVPKKIHKAEREKLKREHLNDLFLDLAN 60

Query: 61  VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL 120
            LELTEPNNGKASIL EA+RL+KDLFGQIECLRKEHA LL+ESR VDIEK ELREETSAL
Sbjct: 61  ALELTEPNNGKASILSEASRLLKDLFGQIECLRKEHALLLSESRYVDIEKTELREETSAL 120

Query: 121 ASQIEKLQSELQSRAVHSKPDLNTTPPQ---------AHFSGECLGLPVMEPTMQQTHAV 180
           ASQIEKLQSELQSRAVHSKPDLN TPP           HFSGECLGLPVMEPT+QQTHAV
Sbjct: 121 ASQIEKLQSELQSRAVHSKPDLNVTPPSEFPQQGTTVQHFSGECLGLPVMEPTLQQTHAV 180

Query: 181 IIVPVRPDLPSYPAADATQAPTMATSHVTKPHARYPTPADSWPAGLLKLSQTTEQPSKEF 240
            IVPVRPDLPSYPA DAT AP M TSHV+KPHARYPTPADSWPAGLLKLSQTTE  SKE 
Sbjct: 181 FIVPVRPDLPSYPATDATHAPIMPTSHVSKPHARYPTPADSWPAGLLKLSQTTE-ASKEA 240

Query: 241 LTIGCKSITDI 243
           L IGCK+  D+
Sbjct: 241 LAIGCKNFADM 250

[Close]
BLAST of Carg18182 vs. TrEMBL
Match: tr|A0A1S3BV30|A0A1S3BV30_CUCME (transcription factor bHLH47 OS=Cucumis melo OX=3656 GN=LOC103493984 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 3.9e-101
Identity = 204/252 (80.95%), Postives = 215/252 (85.32%), Query Frame = 0 

Query: 1   MVSEVPSQPVIETDVADVASVSRQC-PGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLA 60
           MVSEVPS+PV+ETD    ASVSR C PGKKN  KVPKKIHKAEREKLKR HLNDLFL LA
Sbjct: 1   MVSEVPSKPVVETD----ASVSRNCPPGKKNQVKVPKKIHKAEREKLKREHLNDLFLDLA 60

Query: 61  NVLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSA 120
           N LELTEPNNGKASIL EA+RL+KDLFGQIECLRKEHASLL+ESR VDIEKNELREETSA
Sbjct: 61  NALELTEPNNGKASILSEASRLLKDLFGQIECLRKEHASLLSESRYVDIEKNELREETSA 120

Query: 121 LASQIEKLQSELQSRAVHSKPDLNTTPPQ---------AHFSGECLGLPVMEPTMQQTHA 180
           LASQIEKLQSELQSRAVHSKPDL  TPP           HFSGECLGLPVMEP++QQTHA
Sbjct: 121 LASQIEKLQSELQSRAVHSKPDLYITPPSEFPQQGTTVQHFSGECLGLPVMEPSLQQTHA 180

Query: 181 VIIVPVRPDLPSYPAADATQAPTMATSHVTKPHARYPTPADSWPAGLLKLSQTTEQPSKE 240
           V IVPVRPDLPSYP  DAT AP M TSHV+KPHARYPTPADSWPAGLLKLSQTTE  +KE
Sbjct: 181 VFIVPVRPDLPSYPGTDATHAPIMPTSHVSKPHARYPTPADSWPAGLLKLSQTTE-ANKE 240

Query: 241 FLTIGCKSITDI 243
            L IGCK+I D+
Sbjct: 241 VLAIGCKNIADM 247

[Close]
BLAST of Carg18182 vs. TrEMBL
Match: tr|A0A2P4KE66|A0A2P4KE66_QUESU (Transcription factor bhlh47 OS=Quercus suber OX=58331 GN=CFP56_38683 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 137/241 (56.85%), Postives = 167/241 (69.29%), Query Frame = 0 

Query: 1   MVSEVPSQPVIETDVADVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN 60
           M SE  S  V   +V    S+ R CPGKKN  KVPK+I KAEREKLKR HLNDLFL LA+
Sbjct: 1   MSSEAQSPLVDNVNVVTEDSIDRDCPGKKNKGKVPKRIQKAEREKLKREHLNDLFLDLAS 60

Query: 61  VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL 120
            LELT+ N+GKAS+LCEA RL++DL  QIECL+KEH SLL+ES+ V +EKNELREE SAL
Sbjct: 61  ALELTQQNSGKASVLCEATRLLRDLLSQIECLKKEHTSLLSESKYVTVEKNELREENSAL 120

Query: 121 ASQIEKLQSELQSRAVHSKPDLNTTPPQ-------AHFSGECLGLPVMEPTMQQTHAVII 180
             +IEKLQSEL+ R   SKPDLN  PP+       +HF G+C+ LP +EP+ QQ  AV +
Sbjct: 121 EIEIEKLQSELEERIAQSKPDLNVPPPEFQQPELTSHFPGDCVRLPAVEPSSQQVPAVFV 180

Query: 181 VPVRPD-LPSYPAADATQAPTMATSHVTKPHARYPTPADSWPAGLLKLSQTTEQPS--KE 232
           +P+ P+ LP     D TQ      S+++KPHARYPTP DSWP+ LL      EQP+  KE
Sbjct: 181 LPICPEALP-----DVTQQTFKPNSNLSKPHARYPTPMDSWPSQLL-----GEQPTARKE 231

[Close]
BLAST of Carg18182 vs. TrEMBL
Match: tr|W9QXK2|W9QXK2_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005308 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.7e-60
Identity = 129/228 (56.58%), Postives = 158/228 (69.30%), Query Frame = 0 

Query: 1   MVSEVPSQPVIETDVADVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN 60
           M SE     V + +V    SV R CPG KN  KVPK+IHKAEREK KR  LN+LF  L+N
Sbjct: 317 MGSEDAVPLVDKVNVGLEVSVDRDCPGTKNQKKVPKRIHKAEREKQKREQLNELFFELSN 376

Query: 61  VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL 120
            L+L +PNNGKAS+LCEA RL+KDL  QIECLRKE+ SLL+ES  V +EKNELREE S L
Sbjct: 377 SLDLKQPNNGKASLLCEATRLLKDLLAQIECLRKENTSLLSESHYVTVEKNELREENSTL 436

Query: 121 ASQIEKLQSELQSRAVHSKPDLNTTPPQAHFSGECLGLPVMEPTMQQTHAVIIVPVRPDL 180
            +QI KLQSE+++R V SKPDLN  PP      +CL +P  EPT+ Q H V+++P   DL
Sbjct: 437 GTQIGKLQSEIEARVVQSKPDLNAPPP------DCLTMPAPEPTLGQVHTVLVLPFHSDL 496

Query: 181 PSYPAADATQAPTMATSHVTKPHARYPTPADSWPAGLLKLSQTTEQPS 229
            +YP +DA Q  +  TS+V+KPHARYPT  DSWPA LL+     E+ S
Sbjct: 497 QAYPLSDAAQVTSNPTSNVSKPHARYPTSGDSWPAQLLRQQPEAEEDS 538

[Close]
BLAST of Carg18182 vs. TrEMBL
Match: tr|A0A061FX23|A0A061FX23_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_013940 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 129/225 (57.33%), Postives = 158/225 (70.22%), Query Frame = 0 

Query: 1   MVSEVPSQPVIETDVADVASVSRQCPGKKNPAKVPKKIHKAEREKLKRGHLNDLFLHLAN 60
           M SE P+  V +T  A   SV R C   K   KVP++IHKAEREKLKR HLN+LFL LAN
Sbjct: 1   MGSEAPAPLVEKTIAAVETSVGRSC-APKTKGKVPRRIHKAEREKLKREHLNELFLDLAN 60

Query: 61  VLELTEPNNGKASILCEANRLVKDLFGQIECLRKEHASLLTESRDVDIEKNELREETSAL 120
            L+  +PNNGKASILCEA RL+KDLFGQIE L+KE+A LL+ES  V IEKNEL+EE S L
Sbjct: 61  ALDPNQPNNGKASILCEATRLLKDLFGQIETLKKENACLLSESHYVSIEKNELKEENSTL 120

Query: 121 ASQIEKLQSELQSRAVHSKPDLNTTP-------PQAHFSGECLGLPVMEPTMQQTHAVII 180
            +QI+KLQSE+ +R   SKPDLN  P         +HF G+  GLP +EP +QQ  A+++
Sbjct: 121 ETQIQKLQSEIGTRVAQSKPDLNEPPLGFQQSELSSHFRGDRPGLPAVEPALQQASALLV 180

Query: 181 VPVRPDLPSYPAADATQAPTMATSHVTKPHARYPTPADSWPAGLL 219
           VP+ PD+ +YP  D+ Q      S V+KPHARYPTPADSWP+ LL
Sbjct: 181 VPIHPDIQAYPVPDSMQPTANTNSIVSKPHARYPTPADSWPSQLL 224

The following BLAST results are available for this feature:
BLAST of Carg18182 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022931022.11.4e-131100.00transcription factor bHLH47-like [Cucurbita moschata][more]
XP_023530170.12.0e-12898.36transcription factor bHLH47-like [Cucurbita pepo subsp. pepo][more]
XP_022972931.14.5e-12595.90transcription factor bHLH47-like [Cucurbita maxima][more]
XP_011660048.18.3e-10381.27PREDICTED: transcription factor bHLH47 [Cucumis sativus] >KGN63662.1 hypothetica... [more]
XP_008453195.15.9e-10180.95PREDICTED: transcription factor bHLH47 [Cucumis melo][more]
BLAST of Carg18182 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G47640.13.9e-2234.58basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G23210.12.8e-0439.24basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of Carg18182 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q69V10|BH062_ORYSJ1.2e-2338.39Transcription factor BHLH062 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH062... [more]
sp|Q9SN74|BH047_ARATH7.1e-2134.58Transcription factor bHLH47 OS=Arabidopsis thaliana OX=3702 GN=BHLH47 PE=1 SV=1[more]
BLAST of Carg18182 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSA0|A0A0A0LSA0_CUCSA5.5e-10381.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009660 PE=4 SV=1[more]
tr|A0A1S3BV30|A0A1S3BV30_CUCME3.9e-10180.95transcription factor bHLH47 OS=Cucumis melo OX=3656 GN=LOC103493984 PE=4 SV=1[more]
tr|A0A2P4KE66|A0A2P4KE66_QUESU1.5e-6056.85Transcription factor bhlh47 OS=Quercus suber OX=58331 GN=CFP56_38683 PE=4 SV=1[more]
tr|W9QXK2|W9QXK2_9ROSA5.7e-6056.58Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005308 PE=4 SV=1[more]
tr|A0A061FX23|A0A061FX23_THECC1.1e-5857.33Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 OS=Th... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18182-RACarg18182-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 110..130
NoneNo IPR availablePANTHERPTHR23042CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAScoord: 15..226
NoneNo IPR availablePANTHERPTHR23042:SF51TRANSCRIPTION FACTOR BHLH47coord: 15..226
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 35..85
score: 9.312
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILYSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 35..99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18182Cla019119Watermelon (97103) v1carwmB0613
Carg18182Csa1G009660Cucumber (Chinese Long) v2carcuB0638
Carg18182MELO3C017166Melon (DHL92) v3.5.1carmeB0616
Carg18182ClCG06G016270Watermelon (Charleston Gray)carwcgB0598
Carg18182CSPI01G02200Wild cucumber (PI 183967)carcpiB0645
Carg18182Cucsa.197630Cucumber (Gy14) v1carcgyB0689
Carg18182CmaCh11G001510Cucurbita maxima (Rimu)carcmaB0861
Carg18182CmaCh10G001850Cucurbita maxima (Rimu)carcmaB0859
Carg18182CmoCh10G002020Cucurbita moschata (Rifu)carcmoB0837
Carg18182CmoCh11G001570Cucurbita moschata (Rifu)carcmoB0838
Carg18182Lsi06G014730Bottle gourd (USVL1VR-Ls)carlsiB560
Carg18182Cp4.1LG04g15050Cucurbita pepo (Zucchini)carcpeB0874
Carg18182Cp4.1LG18g07840Cucurbita pepo (Zucchini)carcpeB0871
Carg18182MELO3C017166.2Melon (DHL92) v3.6.1carmedB0623
Carg18182CsaV3_1G002260Cucumber (Chinese Long) v3carcucB0646
Carg18182Cla97C06G125870Watermelon (97103) v2carwmbB0640
Carg18182Bhi02G000237Wax gourdcarwgoB0732
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg18182Carg10407Silver-seed gourdcarcarB392
The following block(s) are covering this gene:
GeneOrganismBlock
Carg18182Silver-seed gourdcarcarB061
Carg18182Cucumber (Gy14) v2carcgybB0611
Carg18182Cucumber (Gy14) v2carcgybB0612
Carg18182Cucumber (Gy14) v1carcgyB0688
Carg18182Cucurbita moschata (Rifu)carcmoB0840
Carg18182Wild cucumber (PI 183967)carcpiB0646
Carg18182Cucumber (Chinese Long) v2carcuB0639
Carg18182Cucumber (Chinese Long) v3carcucB0647
Carg18182Bottle gourd (USVL1VR-Ls)carlsiB558
Carg18182Melon (DHL92) v3.5.1carmeB0615
Carg18182Melon (DHL92) v3.6.1carmedB0622
Carg18182Watermelon (Charleston Gray)carwcgB0595
Carg18182Watermelon (97103) v1carwmB0610
Carg18182Watermelon (97103) v2carwmbB0638
Carg18182Watermelon (97103) v2carwmbB0639
Carg18182Watermelon (97103) v2carwmbB0641
Carg18182Wax gourdcarwgoB0730