Carg18079 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGACGATTGCGCCTTCTCAAAGTCTGAGCCGAGAAGCAGCTCACCGCACCGGCGTTCTCCTCCGGATCCACGAGAAGCTCGTCGAGTTCCGAAATTCACCAGGAAAGTATCTGCTTCTTACCCTGAGGATAATTGGAACCAACGCGTTAATGAACATTCTGAAGGGTCGGTTTCTCGGCAAAGGAGTGAGTCTTTGTCTCAGAAAGGATTTTAGCTTTCTTGAAAAATTCAAGCTGAATCAATGCAGGAGAAGGAGCCGCAACCGCCGCGTCCTCTAGAAGCCGACGAGATATTCAAGAAAATGAAGGAGACAGGTCTAATTCCTAACGCTGTCGCCATGCTTGATGGGCTATGAAACTCTTTGGTTTGATTCGTGAGAAGGGTACAATTCCAGAAGTTGTGGTTACACCGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGCTTGAAGAAGCTATTAGGATCTTCAGGAAAATGCAGAATAATGGAATTTCTCCTAATGCTTGA ATGGATGACGATTGCGCCTTCTCAAAGTCTGAGCCGAGAAGCAGCTCACCGCACCGGCGTTCTCCTCCGGATCCACGAGAAGCTCGTCGAGTTCCGAAATTCACCAGGAAAGTATCTGCTTCTTACCCTGAGGATAATTGGAACCAACGCGTTAATGAACATTCTGAAGGGTCGGAGAAGGAGCCGCAACCGCCGCGTCCTCTAGAAGCCGACGAGATATTCAAGAAAATGAAGGAGACAGGGTACAATTCCAGAAGTTGTGGTTACACCGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGCTTGAAGAAGCTATTAGGATCTTCAGGAAAATGCAGAATAATGGAATTTCTCCTAATGCTTGA ATGGATGACGATTGCGCCTTCTCAAAGTCTGAGCCGAGAAGCAGCTCACCGCACCGGCGTTCTCCTCCGGATCCACGAGAAGCTCGTCGAGTTCCGAAATTCACCAGGAAAGTATCTGCTTCTTACCCTGAGGATAATTGGAACCAACGCGTTAATGAACATTCTGAAGGGTCGGAGAAGGAGCCGCAACCGCCGCGTCCTCTAGAAGCCGACGAGATATTCAAGAAAATGAAGGAGACAGGGTACAATTCCAGAAGTTGTGGTTACACCGCTGTTGTTGATGGGTTTTGCAAGGCCGAGAAGCTTGAAGAAGCTATTAGGATCTTCAGGAAAATGCAGAATAATGGAATTTCTCCTAATGCTTGA MDDDCAFSKSEPRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGSEKEPQPPRPLEADEIFKKMKETGYNSRSCGYTAVVDGFCKAEKLEEAIRIFRKMQNNGISPNA
BLAST of Carg18079 vs. NCBI nr
Match: XP_022969144.1 (pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima] >XP_022969146.1 pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima]) HSP 1 Score: 109.4 bits (272), Expect = 8.8e-21 Identity = 72/175 (41.14%), Postives = 86/175 (49.14%), Query Frame = 0
BLAST of Carg18079 vs. NCBI nr
Match: XP_023554525.1 (pentatricopeptide repeat-containing protein At4g38150-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554526.1 pentatricopeptide repeat-containing protein At4g38150-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 105.9 bits (263), Expect = 9.7e-20 Identity = 70/175 (40.00%), Postives = 85/175 (48.57%), Query Frame = 0
BLAST of Carg18079 vs. NCBI nr
Match: XP_022952706.1 (pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata] >XP_022952707.1 pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata]) HSP 1 Score: 94.4 bits (233), Expect = 2.9e-16 Identity = 64/143 (44.76%), Postives = 78/143 (54.55%), Query Frame = 0
BLAST of Carg18079 vs. NCBI nr
Match: XP_004144563.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis sativus] >KGN43381.1 hypothetical protein Csa_7G029950 [Cucumis sativus]) HSP 1 Score: 80.1 bits (196), Expect = 5.7e-12 Identity = 63/177 (35.59%), Postives = 81/177 (45.76%), Query Frame = 0
BLAST of Carg18079 vs. NCBI nr
Match: XP_008462006.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis melo] >XP_008462007.1 PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Cucumis melo]) HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10 Identity = 61/177 (34.46%), Postives = 78/177 (44.07%), Query Frame = 0
BLAST of Carg18079 vs. TAIR10
Match: AT4G38150.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 50.8 bits (120), Expect = 6.7e-07 Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 0
BLAST of Carg18079 vs. TAIR10
Match: AT5G57250.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 41.2 bits (95), Expect = 5.3e-04 Identity = 14/50 (28.00%), Postives = 30/50 (60.00%), Query Frame = 0
BLAST of Carg18079 vs. Swiss-Prot
Match: sp|Q9SZL5|PP356_ARATH (Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana OX=3702 GN=At4g38150 PE=2 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 1.2e-05 Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 0
BLAST of Carg18079 vs. TrEMBL
Match: tr|A0A0A0K6C0|A0A0A0K6C0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G029950 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12 Identity = 63/177 (35.59%), Postives = 81/177 (45.76%), Query Frame = 0
BLAST of Carg18079 vs. TrEMBL
Match: tr|A0A1S3CFW0|A0A1S3CFW0_CUCME (pentatricopeptide repeat-containing protein At4g38150 OS=Cucumis melo OX=3656 GN=LOC103500481 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 7.1e-11 Identity = 61/177 (34.46%), Postives = 78/177 (44.07%), Query Frame = 0
BLAST of Carg18079 vs. TrEMBL
Match: tr|A0A2I4FBR9|A0A2I4FBR9_9ROSI (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g38150-like OS=Juglans regia OX=51240 GN=LOC108997320 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.1e-07 Identity = 40/103 (38.83%), Postives = 49/103 (47.57%), Query Frame = 0
BLAST of Carg18079 vs. TrEMBL
Match: tr|A0A059ANX7|A0A059ANX7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I01549 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.9e-04 Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 0
BLAST of Carg18079 vs. TrEMBL
Match: tr|A0A1S2YYP8|A0A1S2YYP8_CICAR (pentatricopeptide repeat-containing protein At4g38150 OS=Cicer arietinum OX=3827 GN=LOC101493915 PE=4 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 4.9e-04 Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |