Carg18035 (gene) Silver-seed gourd

Overview
NameCarg18035
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionMediator of RNA polymerase II transcription subunit 13
LocationCucurbita_argyrosperma_scaffold_171 : 523355 .. 524756 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACAGCGGTGCCTTTTTTACCGAATGTAAGTTCAGCAGTAGGTATGGATATAGGAACTAACTCTCAAGTAGATGGACCTGAGATGGATGGGTTTGGAGGTCATCAAAAGAATCCTAGCCTACACTGTTGCTATGGATGGACAGAAGACTGGCGCTGGCTAGTATGCATCTGGACAGATTCACGAGGAGAATTATTAGACAGTCATATATTTCCCTTTGGTGGATCAGCAGTAGGCAGGATACGAAGGGTCTGGAATGCATTTTTGTCCAAGTTCTGCAGCAAGGCTGTATGATACTTCAGTCATGTTCTCCTGATACTAGTGTTTCCAAGCCTAGAGATTTGGTTATTGCAAGAATTGGAACATTCTACGAACTCGAGTATCTAGGTAAAATTCCTCTATCATTATTATTTTCAGCTTCAATTGTTTATCGACTCAGTTTTAGTAGACTCTGCTTCTTGTATCTAATACCCTCTGTGGGATTCCCACGTCGGTTAGGGAGGAGAACGAAACATCCTTTTATAAGGGTGTGGAAATCTCTCCCTAGTAGACGCGTTTTAAAAACCTTGGGACAATATCTGCTAGTAGTGGGCTTGGGCTCTTACAAATAGTATCAGAGCCAGGTTTCGGGCGGTGTGCCAGCGAGAAGGCTGAGCCCCGAAGGGGGGTGGACATGAGGCGATGTGCCAGCAAAGACGTTGGGCCCCAAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGGAGGAGAACAAAACAACTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACTGCATTTTAAAAAACCTTGAGAGGAAGCCCGAAAGGGGAGCCCAAAGAGGACAGTATATGCTAGCGGTGGGCTTTATTTCACAAGTGCATCAATCATCTCATTCAGATGCGAGCTCTTGGGAAATGATCCCCACTTAATAAACTCACAAGTTGTTTCTTGATGACTTTACGACACACTATTTTTCACATATCCATCCGTTAAAGATTTAAAAAATTTCTATTAGATTTTTGGGGGGAGGTTATTTAAAATTTCTGACCTGTTTTGGAACTAATGTTTCGGATTTTGCCATCTTATTATGACTAGAGTGGCAGAAGGCCATTTATTCACTATGGGGATCTGAGGTGAAAAAATGGCCGTTGCAACTTCGCCGCTGCATGCCAGATGGGATATCATCAAGTAGCAACGGGAGTTCCTTGCAACAACAGGAGATGAGTTTGATTCACGATAGAAACCTTCCTTCCTCCCCAAATCCTTTATATAGCCCGCATTCAAAATCTACAGGCTTTATGAAAGCTAGCATTGGGCAACCTACCATAAGAAAGCAGCTAATGGGTGGTCATGCAGTGGTGGACAATATCAAGAGGAATGATTCAGTGGGTGCATAG

mRNA sequence

ATGACAACAGCGGTGCCTTTTTTACCGAATGTAAGTTCAGCAGTAGGTATGGATATAGGAACTAACTCTCAAGTAGATGGACCTGAGATGGATGGGTTTGGAGGTCATCAAAAGAATCCTAGCCTACACTGTTGCTATGGATGGACAGAAGACTGGCGCTGGCTAGTATGCATCTGGACAGATTCACGAGGAGAATTATTAGACAGTCATATATTTCCCTTTGGTGGATCAGCAGTAGGCAGGATACGAAGGGTCTGGAATGCATTTTTGTCCAAGTTCTGCAGCAAGGCTAAGGCCATTTATTCACTATGGGGATCTGAGGTGAAAAAATGGCCGTTGCAACTTCGCCGCTGCATGCCAGATGGGATATCATCAAGTAGCAACGGGAGTTCCTTGCAACAACAGGAGATGAGTTTGATTCACGATAGAAACCTTCCTTCCTCCCCAAATCCTTTATATAGCCCGCATTCAAAATCTACAGGCTTTATGAAAGCTAGCATTGGGCAACCTACCATAAGAAAGCAGCTAATGGGTGGTCATGCAGTGGTGGACAATATCAAGAGGAATGATTCAGTGGGTGCATAG

Coding sequence (CDS)

ATGACAACAGCGGTGCCTTTTTTACCGAATGTAAGTTCAGCAGTAGGTATGGATATAGGAACTAACTCTCAAGTAGATGGACCTGAGATGGATGGGTTTGGAGGTCATCAAAAGAATCCTAGCCTACACTGTTGCTATGGATGGACAGAAGACTGGCGCTGGCTAGTATGCATCTGGACAGATTCACGAGGAGAATTATTAGACAGTCATATATTTCCCTTTGGTGGATCAGCAGTAGGCAGGATACGAAGGGTCTGGAATGCATTTTTGTCCAAGTTCTGCAGCAAGGCTAAGGCCATTTATTCACTATGGGGATCTGAGGTGAAAAAATGGCCGTTGCAACTTCGCCGCTGCATGCCAGATGGGATATCATCAAGTAGCAACGGGAGTTCCTTGCAACAACAGGAGATGAGTTTGATTCACGATAGAAACCTTCCTTCCTCCCCAAATCCTTTATATAGCCCGCATTCAAAATCTACAGGCTTTATGAAAGCTAGCATTGGGCAACCTACCATAAGAAAGCAGCTAATGGGTGGTCATGCAGTGGTGGACAATATCAAGAGGAATGATTCAGTGGGTGCATAG

Protein sequence

MTTAVPFLPNVSSAVGMDIGTNSQVDGPEMDGFGGHQKNPSLHCCYGWTEDWRWLVCIWTDSRGELLDSHIFPFGGSAVGRIRRVWNAFLSKFCSKAKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSPNPLYSPHSKSTGFMKASIGQPTIRKQLMGGHAVVDNIKRNDSVGA
Homology
[Close]
BLAST of Carg18035 vs. NCBI nr
Match: XP_022930825.1 (mediator of RNA polymerase II transcription subunit 13 [Cucurbita moschata])

HSP 1 Score: 324.3 bits (830), Expect = 2.8e-85
Identity = 161/215 (74.88%), Postives = 168/215 (78.14%), Query Frame = 0 

Query: 7    FLPNVSSAVGMDIGTNSQVDGPEMDGFGGHQKNPSLHCCYGWTEDWRWLVCIWTDSRGEL 66
            FLPNVSSAVGMDIGTNSQVDGPEMDGFGGHQKNPSLHCCYGWTEDWRWLVCIWTDSRGEL
Sbjct: 1506 FLPNVSSAVGMDIGTNSQVDGPEMDGFGGHQKNPSLHCCYGWTEDWRWLVCIWTDSRGEL 1565

Query: 67   LDSHIFPFGG-------------------------------SAVGR-----IRRVWNAFL 126
            LDSHIFPFGG                               ++V +     I R+   + 
Sbjct: 1566 LDSHIFPFGGISSRQDTKGLECIFVQVLQQGCMILQSCSPDTSVSKPRDLVIARIGTFYE 1625

Query: 127  SKFCSKAKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSPN 186
             ++    KAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSPN
Sbjct: 1626 LEYLEWQKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSPN 1685

[Close]
BLAST of Carg18035 vs. NCBI nr
Match: XP_022966517.1 (mediator of RNA polymerase II transcription subunit 13 [Cucurbita maxima])

HSP 1 Score: 324.3 bits (830), Expect = 2.8e-85
Identity = 161/215 (74.88%), Postives = 168/215 (78.14%), Query Frame = 0 

Query: 7    FLPNVSSAVGMDIGTNSQVDGPEMDGFGGHQKNPSLHCCYGWTEDWRWLVCIWTDSRGEL 66
            FLPNVSSAVGMDIGTNSQVDGPEMDGFGGHQKNPSLHCCYGWTEDWRWLVCIWTDSRGEL
Sbjct: 1506 FLPNVSSAVGMDIGTNSQVDGPEMDGFGGHQKNPSLHCCYGWTEDWRWLVCIWTDSRGEL 1565

Query: 67   LDSHIFPFGG-------------------------------SAVGR-----IRRVWNAFL 126
            LDSHIFPFGG                               ++V +     I R+   + 
Sbjct: 1566 LDSHIFPFGGISSRQDTKGLECIFVQVLQQGCMILQSCSPDTSVSKPRDLVIARIGTFYE 1625

Query: 127  SKFCSKAKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSPN 186
             ++    KAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSPN
Sbjct: 1626 LEYLEWQKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSPN 1685

[Close]
BLAST of Carg18035 vs. NCBI nr
Match: XP_023529870.1 (mediator of RNA polymerase II transcription subunit 13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.3 bits (830), Expect = 2.8e-85
Identity = 161/215 (74.88%), Postives = 168/215 (78.14%), Query Frame = 0 

Query: 7    FLPNVSSAVGMDIGTNSQVDGPEMDGFGGHQKNPSLHCCYGWTEDWRWLVCIWTDSRGEL 66
            FLPNVSSAVGMDIGTNSQVDGPEMDGFGGHQKNPSLHCCYGWTEDWRWLVCIWTDSRGEL
Sbjct: 1507 FLPNVSSAVGMDIGTNSQVDGPEMDGFGGHQKNPSLHCCYGWTEDWRWLVCIWTDSRGEL 1566

Query: 67   LDSHIFPFGG-------------------------------SAVGR-----IRRVWNAFL 126
            LDSHIFPFGG                               ++V +     I R+   + 
Sbjct: 1567 LDSHIFPFGGISSRQDTKGLECIFVQVLQQGCMILQSCSPDTSVSKPRDLVIARIGTFYE 1626

Query: 127  SKFCSKAKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSPN 186
             ++    KAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSPN
Sbjct: 1627 LEYLEWQKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSPN 1686

[Close]
BLAST of Carg18035 vs. NCBI nr
Match: XP_008451019.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 13 [Cucumis melo])

HSP 1 Score: 296.6 bits (758), Expect = 6.2e-77
Identity = 149/216 (68.98%), Postives = 160/216 (74.07%), Query Frame = 0 

Query: 7    FLPNVSSAVGMDIGTNSQVDGPEMDGFG-GHQKNPSLHCCYGWTEDWRWLVCIWTDSRGE 66
            FL   +S VGMDIG+NSQ+DGPEMDGFG GHQKNPSLHC YGWTEDWRWLVCIWTDSRGE
Sbjct: 1500 FLQGTNSTVGMDIGSNSQLDGPEMDGFGCGHQKNPSLHCSYGWTEDWRWLVCIWTDSRGE 1559

Query: 67   LLDSHIFPFGG-------------------------------SAVGR-----IRRVWNAF 126
            LLDSHIFPFGG                               + V +     I R+   +
Sbjct: 1560 LLDSHIFPFGGISSRQDTKGLECIFVQVLQQGCMILQSCSPDTGVSKPRDLVIARIGMFY 1619

Query: 127  LSKFCSKAKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSP 186
              ++    KAIYSLWGSEVKKWPLQLRRCMPDGISSS+NGSSLQQQEMSLIHDRNLPSSP
Sbjct: 1620 ELEYLEWQKAIYSLWGSEVKKWPLQLRRCMPDGISSSTNGSSLQQQEMSLIHDRNLPSSP 1679

[Close]
BLAST of Carg18035 vs. NCBI nr
Match: KGN66361.1 (hypothetical protein Csa_1G599542 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 5.2e-76
Identity = 147/216 (68.06%), Postives = 159/216 (73.61%), Query Frame = 0 

Query: 7    FLPNVSSAVGMDIGTNSQVDGPEMDGFG-GHQKNPSLHCCYGWTEDWRWLVCIWTDSRGE 66
            FL   +S VGMD+G+NSQ+DGPEMDGFG GHQKNPSLHC YGWTEDWRWLVCIWTDSRGE
Sbjct: 1048 FLQGTNSTVGMDMGSNSQLDGPEMDGFGCGHQKNPSLHCSYGWTEDWRWLVCIWTDSRGE 1107

Query: 67   LLDSHIFPFGG-------------------------------SAVGR-----IRRVWNAF 126
            LLDSH FPFGG                               + V +     I R+   +
Sbjct: 1108 LLDSHTFPFGGISSRQDTKGLECIFVQVLQQGCMILQSCSPDTGVSKPRDLVIARIGMFY 1167

Query: 127  LSKFCSKAKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSP 186
              ++    KAIYSLWGSEVKKWPLQLRRCMPDGISSS+NGSSLQQQEMSLIHDRNLPSSP
Sbjct: 1168 ELEYLEWQKAIYSLWGSEVKKWPLQLRRCMPDGISSSTNGSSLQQQEMSLIHDRNLPSSP 1227

[Close]
BLAST of Carg18035 vs. TAIR10
Match: AT1G55325.2 (RNA polymerase II transcription mediators)

HSP 1 Score: 178.7 bits (452), Expect = 3.4e-45
Identity = 96/211 (45.50%), Postives = 126/211 (59.72%), Query Frame = 0 

Query: 9    PNVSSAVGMDIGTNSQVDGPEMDGFGGHQKNPSLHCCYGWTEDWRWLVCIWTDSRGELLD 68
            P ++S  G+  G++SQ D  +++G    +  PSLHCCYGWTEDWRWLV IWTD+RGELLD
Sbjct: 1465 PGMNSMEGITSGSSSQGDVSQLEG----KAIPSLHCCYGWTEDWRWLVSIWTDARGELLD 1524

Query: 69   SHIFPFGGSAVGR-------------------------------------IRRVWNAFLS 128
            +HIFPFGG +  +                                     I R+ N F  
Sbjct: 1525 THIFPFGGISSRQDTKGLQCLFVQVLQQGCQILQACSSPDNGSFKPRDFVITRIGNFFEL 1584

Query: 129  KFCSKAKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSPNP 183
            ++    KAIYS  G E+KKWP+QLRR  P GI+++SNGSSLQQQ++SLI +R   SS + 
Sbjct: 1585 EYQEWQKAIYSAGGPEIKKWPIQLRRSAPSGIATNSNGSSLQQQDLSLIQER--ASSTST 1644

[Close]
BLAST of Carg18035 vs. Swiss-Prot
Match: sp|F4I096|MED13_ARATH (Mediator of RNA polymerase II transcription subunit 13 OS=Arabidopsis thaliana OX=3702 GN=MED13 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.1e-40
Identity = 89/182 (48.90%), Postives = 119/182 (65.38%), Query Frame = 0 

Query: 9    PNVSSAVGMDIGTNSQVDGPEMDGFGGHQKNPSLHCCYGWTEDWRWLVCIWTDSR----- 68
            P ++S  G+  G++SQ D  +++G    +  PSLHCCYGWTEDWRWLV IWTD+R     
Sbjct: 1509 PGMNSMEGITSGSSSQGDVSQLEG----KAIPSLHCCYGWTEDWRWLVSIWTDARVLQQG 1568

Query: 69   GELLDSHIFPFGGSAVGR---IRRVWNAFLSKFCSKAKAIYSLWGSEVKKWPLQLRRCMP 128
             ++L +   P  GS   R   I R+ N F  ++    KAIYS  G E+KKWP+QLRR  P
Sbjct: 1569 CQILQACSSPDNGSFKPRDFVITRIGNFFELEYQEWQKAIYSAGGPEIKKWPIQLRRSAP 1628

Query: 129  DGISSSSNGSSLQQQEMSLIHDRNLPSSPNPLYSPHSKSTGFMKASIGQPTIRKQLMGGH 183
             GI+++SNGSSLQQQ++SLI +R   SS + LYS HSK + F+K S+GQ   RKQ+MGG 
Sbjct: 1629 SGIATNSNGSSLQQQDLSLIQER--ASSTSTLYSSHSKQSTFVKGSMGQSAGRKQIMGGQ 1684

[Close]
BLAST of Carg18035 vs. TrEMBL
Match: tr|A0A1S3BQJ3|A0A1S3BQJ3_CUCME (Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis melo OX=3656 GN=LOC103492426 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 4.1e-77
Identity = 149/216 (68.98%), Postives = 160/216 (74.07%), Query Frame = 0 

Query: 7    FLPNVSSAVGMDIGTNSQVDGPEMDGFG-GHQKNPSLHCCYGWTEDWRWLVCIWTDSRGE 66
            FL   +S VGMDIG+NSQ+DGPEMDGFG GHQKNPSLHC YGWTEDWRWLVCIWTDSRGE
Sbjct: 1500 FLQGTNSTVGMDIGSNSQLDGPEMDGFGCGHQKNPSLHCSYGWTEDWRWLVCIWTDSRGE 1559

Query: 67   LLDSHIFPFGG-------------------------------SAVGR-----IRRVWNAF 126
            LLDSHIFPFGG                               + V +     I R+   +
Sbjct: 1560 LLDSHIFPFGGISSRQDTKGLECIFVQVLQQGCMILQSCSPDTGVSKPRDLVIARIGMFY 1619

Query: 127  LSKFCSKAKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSP 186
              ++    KAIYSLWGSEVKKWPLQLRRCMPDGISSS+NGSSLQQQEMSLIHDRNLPSSP
Sbjct: 1620 ELEYLEWQKAIYSLWGSEVKKWPLQLRRCMPDGISSSTNGSSLQQQEMSLIHDRNLPSSP 1679

[Close]
BLAST of Carg18035 vs. TrEMBL
Match: tr|A0A0A0M2D5|A0A0A0M2D5_CUCSA (Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis sativus OX=3659 GN=Csa_1G599542 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 3.5e-76
Identity = 147/216 (68.06%), Postives = 159/216 (73.61%), Query Frame = 0 

Query: 7    FLPNVSSAVGMDIGTNSQVDGPEMDGFG-GHQKNPSLHCCYGWTEDWRWLVCIWTDSRGE 66
            FL   +S VGMD+G+NSQ+DGPEMDGFG GHQKNPSLHC YGWTEDWRWLVCIWTDSRGE
Sbjct: 1048 FLQGTNSTVGMDMGSNSQLDGPEMDGFGCGHQKNPSLHCSYGWTEDWRWLVCIWTDSRGE 1107

Query: 67   LLDSHIFPFGG-------------------------------SAVGR-----IRRVWNAF 126
            LLDSH FPFGG                               + V +     I R+   +
Sbjct: 1108 LLDSHTFPFGGISSRQDTKGLECIFVQVLQQGCMILQSCSPDTGVSKPRDLVIARIGMFY 1167

Query: 127  LSKFCSKAKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPSSP 186
              ++    KAIYSLWGSEVKKWPLQLRRCMPDGISSS+NGSSLQQQEMSLIHDRNLPSSP
Sbjct: 1168 ELEYLEWQKAIYSLWGSEVKKWPLQLRRCMPDGISSSTNGSSLQQQEMSLIHDRNLPSSP 1227

[Close]
BLAST of Carg18035 vs. TrEMBL
Match: tr|A0A067L494|A0A067L494_JATCU (Mediator of RNA polymerase II transcription subunit 13 OS=Jatropha curcas OX=180498 GN=JCGZ_01856 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.8e-61
Identity = 125/218 (57.34%), Postives = 149/218 (68.35%), Query Frame = 0 

Query: 7    FLPNVSSAVGMDIGTNSQVDGPEMDGFGG-HQKN-PSLHCCYGWTEDWRWLVCIWTDSRG 66
            F+ N SSAV  D G++SQ+DG E DGFGG +QK  PSLHCCYGWTEDWRWLVCIWTD+RG
Sbjct: 1367 FMQNASSAVSADTGSSSQLDGSEPDGFGGSYQKTLPSLHCCYGWTEDWRWLVCIWTDARG 1426

Query: 67   ELLDSHIFPFGGSA------------------------------VGRIR-------RVWN 126
            ELLDSHIFPFGG +                              +G I+       R+ N
Sbjct: 1427 ELLDSHIFPFGGISSRQDTKGLQCLFVQVLQQGCQILQACSSPDIGAIKPRDFVITRIGN 1486

Query: 127  AFLSKFCSKAKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPS 186
             F  ++    KAIYS+ GSE+KKWPLQLRR +PDG+  SSNG+SLQQQEMSL+ +R LPS
Sbjct: 1487 FFELEYLEWQKAIYSVGGSEMKKWPLQLRRSIPDGMPGSSNGASLQQQEMSLMQERTLPS 1546

[Close]
BLAST of Carg18035 vs. TrEMBL
Match: tr|F6GUN3|F6GUN3_VITVI (Mediator of RNA polymerase II transcription subunit 13 OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00450 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 4.6e-60
Identity = 124/219 (56.62%), Postives = 148/219 (67.58%), Query Frame = 0 

Query: 7    FLPNVSSAVGMDIGTNSQVDGPEMDGFG-GHQKN-PSLHCCYGWTEDWRWLVCIWTDSRG 66
            F+ + SSA  +D G  SQ+DG E DGFG GHQKN PSLHCCYGWTEDWRWLVCIWTDSRG
Sbjct: 1533 FMQSASSAGSIDTGPGSQLDGSESDGFGSGHQKNLPSLHCCYGWTEDWRWLVCIWTDSRG 1592

Query: 67   ELLDSHIFPFGGSAVGR-------------------------------------IRRVWN 126
            ELLDSHIFPFGG +  +                                     I R+ +
Sbjct: 1593 ELLDSHIFPFGGISSRQDTKGLQCLFVQILQQGSQILQACSSPDTGIVKPRDLVITRIGS 1652

Query: 127  AFLSKFCSKAKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPS 186
             +  +     KAIYS+ GSEV+KWPLQLR+  PDG+S SSNGSSLQQQEMS+I +RNLPS
Sbjct: 1653 FYELECQEWQKAIYSVGGSEVRKWPLQLRQAAPDGMSGSSNGSSLQQQEMSMIQERNLPS 1712

[Close]
BLAST of Carg18035 vs. TrEMBL
Match: tr|A5BD64|A5BD64_VITVI (Mediator of RNA polymerase II transcription subunit 13 OS=Vitis vinifera OX=29760 GN=VITISV_024990 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 4.6e-60
Identity = 124/219 (56.62%), Postives = 148/219 (67.58%), Query Frame = 0 

Query: 7   FLPNVSSAVGMDIGTNSQVDGPEMDGFG-GHQKN-PSLHCCYGWTEDWRWLVCIWTDSRG 66
           F+ + SSA  +D G  SQ+DG E DGFG GHQKN PSLHCCYGWTEDWRWLVCIWTDSRG
Sbjct: 470 FMQSASSAGSIDTGPGSQLDGSESDGFGSGHQKNLPSLHCCYGWTEDWRWLVCIWTDSRG 529

Query: 67  ELLDSHIFPFGGSAVGR-------------------------------------IRRVWN 126
           ELLDSHIFPFGG +  +                                     I R+ +
Sbjct: 530 ELLDSHIFPFGGISSRQDTKGLQCLFVQILQQGSQILQACSSPDTGIVKPRDLVITRIGS 589

Query: 127 AFLSKFCSKAKAIYSLWGSEVKKWPLQLRRCMPDGISSSSNGSSLQQQEMSLIHDRNLPS 186
            +  +     KAIYS+ GSEV+KWPLQLR+  PDG+S SSNGSSLQQQEMS+I +RNLPS
Sbjct: 590 FYELECQEWQKAIYSVGGSEVRKWPLQLRQAAPDGMSGSSNGSSLQQQEMSMIQERNLPS 649

The following BLAST results are available for this feature:
BLAST of Carg18035 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022930825.12.8e-8574.88mediator of RNA polymerase II transcription subunit 13 [Cucurbita moschata][more]
XP_022966517.12.8e-8574.88mediator of RNA polymerase II transcription subunit 13 [Cucurbita maxima][more]
XP_023529870.12.8e-8574.88mediator of RNA polymerase II transcription subunit 13 [Cucurbita pepo subsp. pe... [more]
XP_008451019.16.2e-7768.98PREDICTED: mediator of RNA polymerase II transcription subunit 13 [Cucumis melo][more]
KGN66361.15.2e-7668.06hypothetical protein Csa_1G599542 [Cucumis sativus][more]
BLAST of Carg18035 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G55325.23.4e-4545.50RNA polymerase II transcription mediators[more]
BLAST of Carg18035 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F4I096|MED13_ARATH7.1e-4048.90Mediator of RNA polymerase II transcription subunit 13 OS=Arabidopsis thaliana O... [more]
BLAST of Carg18035 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BQJ3|A0A1S3BQJ3_CUCME4.1e-7768.98Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis melo OX=3656 G... [more]
tr|A0A0A0M2D5|A0A0A0M2D5_CUCSA3.5e-7668.06Mediator of RNA polymerase II transcription subunit 13 OS=Cucumis sativus OX=365... [more]
tr|A0A067L494|A0A067L494_JATCU1.8e-6157.34Mediator of RNA polymerase II transcription subunit 13 OS=Jatropha curcas OX=180... [more]
tr|F6GUN3|F6GUN3_VITVI4.6e-6056.62Mediator of RNA polymerase II transcription subunit 13 OS=Vitis vinifera OX=2976... [more]
tr|A5BD64|A5BD64_VITVI4.6e-6056.62Mediator of RNA polymerase II transcription subunit 13 OS=Vitis vinifera OX=2976... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: INTERPRO
TermDefinition
IPR009401Mediator_Med13
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003712 transcription cofactor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18035-RACarg18035-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009401Mediator complex, subunit Med13PFAMPF06333Med13_Ccoord: 36..85
e-value: 9.4E-8
score: 31.2
NoneNo IPR availablePANTHERPTHR10791RAG1-ACTIVATING PROTEIN 1coord: 30..187
NoneNo IPR availablePANTHERPTHR10791:SF70MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13coord: 30..187

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg18035Cucumber (Gy14) v2carcgybB0186
Carg18035Cucumber (Gy14) v1carcgyB0212
Carg18035Cucurbita moschata (Rifu)carcmoB0241
Carg18035Cucurbita pepo (Zucchini)carcpeB0248
Carg18035Wild cucumber (PI 183967)carcpiB0199
Carg18035Cucumber (Chinese Long) v3carcucB0199
Carg18035Bottle gourd (USVL1VR-Ls)carlsiB155
Carg18035Melon (DHL92) v3.5.1carmeB0178
Carg18035Melon (DHL92) v3.6.1carmedB0182
Carg18035Watermelon (Charleston Gray)carwcgB0165
Carg18035Watermelon (97103) v1carwmB0163
Carg18035Watermelon (97103) v2carwmbB0178
Carg18035Wax gourdcarwgoB0221