Carg17965 (gene) Silver-seed gourd

Overview
NameCarg17965
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_171 : 26102 .. 32951 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCTACTGAACTTGGTATAATTTTGTACCCAAGTTAATTGTTTGTCTGCACGAGTGTTATATAAGTTTGCTTCTATTAAAATTACCTCCTTTCGAGGTTCTCTTGTGATCTGCTCTAAAGTGCAAAAAACCCAATATAAACCTTATCATCTTCATCACACACTCATGGCCTATTCAGATACAACTTCTTTTGGTAAATTTACGCCTAGTTTCAGAGGTTTATTGACATCCATGGAAATTCGGACGGCCCCAACTATTACCATCCTCCTTTGGACCCTTGCTGAAAATATTAATTCACTCTTATGTTGATGTCGAATGTCCATGAACACTTGTCAGACACGTCCATGGAAACCCACACTCCTAAGTCGAACTCATGTTTGGAGAAGAGTTGCCAAACTTGGGTTTTGTTGGAGATATCAGCAAACATTGATTCACTACTTAAACTTCTTTCACAACGTTTCTTCTAAACTCGACCTTCTGTAACCAGCTTCCGAACATAGTTTTTGTAAACTTGAGGCTTCTGAACTTTGATTGGAAACATATTTTTTTTCTTAGTTCTGACCTCTAAACCTTTTAAATTCATACCTCAAATGCTCCCTTCAAACTAAGGTTCTTGCAAATGGCTTGACAAGTTCCTGGAAAGATCCTAGCACTCTTTTTTAATAGAGAAAAGAGAACCAAAAGATGAAGATAAAAGCAATAGAAAACAAAGATTCTTTCACTATGAGAAAGTGGTACTCTAGAAATGATGTCCCACAGAACACTTCTGGGTCCCAAATTATACACATCATGTGTGCAGTGAAACTTGCATGAGAAGTTCAAAGCTTGTCATCTTCTGATTTTTTCTCTCTCTAATCAATCAATATTTTTGGTTGACGAGAAGGGAGTATTATTGAAACTTTCTGATATTTTTTATTTAAGCATAAGCTTTCTATACCCATGATCTTTTTCCTAAGGTAGGATTCCAACTCATTCTCAACGATCCTCCCTTCGAACAAAGTACACTATATAACCTCCTTTCTACAACCCTCGAACAAAGTATACTCTTTGTTCGATACCTGAGTCACTATGACTGAGGCTCAACTTGAAGATTCTATTAGCATGACTAAGTTACGCTAAGGACATAGTTTTGATACCATGTTAGAAACAACGGATCTCCATAGTGGTATTATATTGCCTACTTTGAGTATAAGCTTTTATAGTTTTGCTTTTGATTTGGCCCAAAAGGTCTTTACCAATTAAGATAGTATCTCTTACTTGTATACCCATGATCTTCCCCCACCCATGATCTTCCCCCATGTGAGACTCCAATCAATCTCCCATCCAAATAAAGACGGAACTTTATTTTCCTTTCATCTTTTGATCAACTTTGTGAACTTTTTCTTTTGTGAACTTTTTCTTATGAAAGACTGTTTAAATTTTCTTTTTTCTTGTTCATCTTTTGAGAGAACTATCCCACTACTATAAATTCTCATCTTCTTCCACAAAAATGTTCATAAACTCCTTCCCAACCCCCAACACACACTTGATCTTCAACACAAAATCCCCATTTCAGCTCTTCCAAAAATGGCATGTGGAAGGAGAAGAAGTTCATGTTCCAAATCAGCCTCATCCCACACTTTAGACAACGATGAATATGATATAGTGGAGAAAGGCAAAGATGATCTTTTAACATGGAACATCCCAACTCTTCCCACTTCCAAAATCTACAAAACAAACCTCTTCACTCACTTTTCTCGTAATTCCCTTCTCAAAACCAAAGAAGGGAACGGCCCTCTAAGCAAAGGCGGTGGATATCTAAACTTGATTTGTGAAGACGATGACTTATGGCATCTCCAAAACAAGTACTGCACAATTCACATTGGAATGGTTCAAATTGGAGTCAAGGCCTTAACAAGAGGACCCTTGAATGCCAAAGTGCTTTTGTGCCTTAGAGATGCAAGGCATCGCAATTTACAAGATTCCCTTTTGGGGATGGTGGAGGCCAATTTGAAAGATGGCCCTCTTTACTTCAATGTCTTCCCTAACATTGTGGAATCTCTTTCTGCCCCTCGGCTGGATGATTTGTTGTTTTTGAATGCTAAAGTTAGAGAGTTTGAGCAGCTCCCTGAAGGTCCCAAGAACATTGTGGTGATGTATAGAGTTTGTTACAAAGTCCTTAAACCTGGAGTTGAAACACGAGTTTTGCTTAAGACTCCTTCAAATGGAAAAACAATCTTTTTTCAGACTGATTTTGAGACTGCTATGAATGATTTTGAGCAAGGAGTTACTGTGTGGAATGAAGTTCAGCTGCCCGAAAACTGGCCGACGCCACGTTCTAAATCGTACTAGGTGACAGAATTCTTTTACGCTTAAGTTATGATCCATCTCGATGTCGTTCCCTGCCTGTTAACACTCCTACTTGGTGGCATGAGATGGCAGATGTGTTCTTTTGACCTATGTGTCTATCGTTTGTGTTTTTGTGTCTGAAATTTGTGCTCTTTTTGGTCTTCCTCTGTGTTGTGTTCGAACTTCATGAATTCTGCATGTGTATATATTATTACTCTGTTAGCCAAATGGGATGAGATGGAATAATGGATTTGTGTTTGTAATAAATGAAAGTTTGTGAATATCCCTCATAATGATATAATATGGGCGGCGACCGCTAAAAAGCCTGATCTTATTTGCCATTCATATGGACTCTCCATACTTCGGCTAGTATTTTCGTCACTCACTTCAAATGTTCATGCTTTTAACTGAAAAATATGTGACTCTACTTGTAACGACCCATGTTTAGGAATTGGAATTTGCATTTATCACCTGGTAGTCTCGGTATTTCCTGCGACATGATCACGTTACTTACTTCTTACTTTTAATAGTGAAAATTATCCCTACAGATCAACATGAGTCATCTAGCATGCTTTATCTTTACTCACATGCATCTCAGGAAAATTTATAGAAGGTCACCCAATATAGAATTGCTCAAAGTTTCTATGATTGAGCCACCGAAATAAAATGTGCACTTTGTTGGTATCATTTCGGTTAAGCATTTGCATTTTCTTAGTTATCCTATTATTAGAATCGCTCTAAATCGCTTGGAATAACTTTCAAATTCATACATCACTTTGATGACCTCATCACTCTTCAATAATCACTCTATAATTCTTCAAAACTTTTCGATAATCACTCTATAATTCTTCTTTACTTTTGAGGAGGGAAATAATTCCAAATGAGTAGGTTCGTGGAAAGATCTTCCAACTTTTTATTATAATATTAATAATAGATTTTTATATTTTTTTTCTAATATCTTAAATAATTTCAACACAGTACCACTTAATCTTAAAGCAGTACCACTTAATCTTAAAGTTTCTATGTATCTTGTTAGTACGGGTAGTAACTTTAATTTTTCTTTAAACATTTTTGTAGTCATCCTATCTTCAAGATTAGTCTCATTCGGCTGCCGGTCTCAGGTATTCCTCTTTCAATTTCTTGTTAAATTTAATTTTTGAAATTCTTATATATATTTTGTAATTTGAATATATAAATGTGGACTTGAATTCTCTCATATCATGATTGTGGATATGTGGGCTCTCTATACCCTTTTTGTCTAACTTGTAGATGAAGGGTTGGAATAAAGACCAAAAGGTGGTAGCATTTTCCACGAACTTACCCATTTGGAATTCTTTATTATGGTGATGGACGGGTTTAGATGGTTTAAATTTTATAAGTCGCGGTTAGGGCACATAGATTGAATTTGAAATTTTGAGTTGGTTGGATTGGTGACTCGAATAATCCGAATAAAGTTCATACTCAACTCAATTGGTCGAGTTGAGGTAGGTTAGATTTTTCTTTTTTTAATTATTTAAAAATTTTACTTATCCATAATACATGTTATATTATTTACTAAAATCTTATAAAATTTAAATATCGAACATTTATAAGTCACAATACATCACTAACATCGATTATAAAACGTTAAATACTCTTATTCTTTTTAAAAATAGAGTTGAGTTAGATTGTAACTCTATCTTGGGTTAGGTTGGGTTGCTTGACTCAATCTGAAGAAGAAAATGTAACCCAACCCAACCTTACTCCCTCTCCTATCTTACGAGAATCTCTACCCAGTCTAGGACAAGATCTTTCGATCGGCCTGCATGGGAGGAGCTCAAACAAAGAAGTGCCTGGTTTGAATTTAGGCCCAGCCTGCCCATCTGCTGCTATGTCTAAGAATGGTGCCGTTATGCGCCTCTACTATGACCTAAATTTGATTCTAATGGTCGACATAGATTTCATGAGACCTGCCCACTATTACGACGAAAAAAAGCCATGTCATTTTCCTTCGCTACTAGGAGAGTCTACTACTTCTATTAGCACCAAACCTTGAGTCGAATTGATAGTGTGTCATAGGTAGTCTGCATAGAACGAGTTGTCGAGTCATATGAACACTTTTAAAAGCATCTTTTAGTCAATAATGCATAATCATACTACATATCATTGTAGGTTCGTGGAAAGACCCTAAGAAAGAATCCATACTACATATCATTGTAGGTTCGTGGAAAGACCCTAAGAAAGAATCTTAAAAAAAGGAAAAATCAACAAGAAAAAAGAAAAGAAAAGGAAGAGGTAGGGTTATTTCTTTATTCATGGGTCTTCTTTATTTTAGTAGCCCCATGAATGGACAACTTCACCAACCAAGTGGCTAACCTTCGTCAACAAGCTAAAGTAGTTCAATCATAACAATGGTAATGTCCCACATCCTTAGCTTAAACTAAAGTTGATGATTGTCTTCTAAATTTCTATCGATATTTTTATCCATACACATGTCTACGTGCAACCACAATTGCACATGAACCCAACGAAGAACCTCTAGTGGTAGCAGCTTCATCTGTGATGGTAGCGTGCACGAATCGGATCAGTGAATCATCTAAGTTTTATGTAAATTTGATATGGAATATGATCGTAAATGGCTATAATGATGTTGGACCATAGAACCCAATAATCCATTTGGTTCCAAGCTTTCATTTCCTTACACTTTCGAAGAGAGTTCCTTCACACTATCACAAGACCAAACAAACAAAAGTATGTGGAAAAACAAAACCCTCAAAACTTTTCTAAATATTTCCATTTCAATGGAACTTAAAAGACAAGGAAGTCTTTATTTGTGGGTCACGTATGTTCAGGATTATTGGAAGAGAGTATTAGGAGATGATCTGGAGTTTATAAGTAAAGAATACATCTCTATTGGTACGAGTCATTTTGGGGAAACAAAAAACAAAGCCACGAGAGCTTATGCTCAAAATGAACAATATCATATTATTGTGAAGATCTGTGATTCCTAACATGGTATCAAACTAAACTGTGGATCGTAGTTTCTAACACATTCATAGAAAAACGATCGACCCATGAGCTAAAAATTCTAGATTTCTGATATTATTGATAGATATTACCTATTTTATTATACTTGACTTGTGACTCGTAAAATTTTACATAAATTCTGTAACAGTCCAAGTCCATCGCCAGTCGATATTGTCTTTATTGGGTTTGTAAACGCATCTATTAGGGGTCGTTTTTCACACTCTTATAAAAAATGCTTCGTTCTCCTCCTCAATCGAGGTGAGATCTCACAAATTCTTTTTCCGAGAATATTTTTTTAGATCGAAAAGGGAGAGTTTTAAATCAAAAAACTAATTTCATACCATGCATGACAAAACATCTTTTCTTTTCTTTTCTATAAAATGATGACATCACAAATCATTAACTCAAAAACTTGCTCTACAATTTAATTTGTCCCCTCTTGCATACTTTTCAATCTTATCTCTATCACTCAAGAACACACTCAAGAACACACAACATTCAAGTCTTTATAAAGCCATTGCCCTCTTCCATGGCATACCCATAGCCCATCAAAAACCAAATCTAATACCCCATTTCTTACCTTTTGCCATATCAAAAAAAAAAAAATGGCAACTTTTCTCAAACCCTGTTGGAGTTCAAAGACAAGAGGAGGAGGACAAAGGCATGCTTTAGACAACGAAGAATTCATCAAAAAAGGCAACAATCTATTGAATTGGAAGATCCCAAAAGTTCCCACATCGAAAATCTACAAAACAAATCCATTCAATTTCTTGTCTGATCCATCCATCAAAACCAAAGAAATGGAAATGGCTTGTGGCAATGGCACCCAAGCTACCAGCTTAATCCTTGAAACCCCCTTCATGGCTAACCTCCGAAGCAAAAGATTCTACAGCATGTTCAACGTGGGGATGATCCAAATTGGAGCCAAAGCTTCAAGAAAAAAAATACCCTTAAACGCTTCGATTACTCTATGCGTTTTCGACACTCGAACCGAAAAGTTCGAAGACTCAATTTTGGGAACGGTGGAAGCGAAATTATGTAATGGGCCATTGTATTTCAATGTTTTTCCCAACATTACAATGTCTTCGATTGATCCTAAGATGTTTGAGGCCTTGTGTTTGCTTGTCATTGTTAAGGGCTTTGAGCATCTTCCTGCAGGGACAAAGCCAATTAGATTGACGTGGAGAACTTGTTACAAGCTGCAAAACAGTGCTTTGGCTGAGGCTTTGATTAAGAGCCCACATGGCAGAACTGAGTTTTTTCAGACAGATTTTGAGAACTCCGATGTTGCTGTTCCGAAGGTTTCAATATGGGATGACGTTCTTTGCAAAGTTGTGGATTTATTTCAGTCTGAGAAATAATCAATTCTCTCTAAGTTTTGATCAAATTTAGATATGATCAACTTTTTTAATTACCTTTAAATATGTGTTTAGAACACTTATAGTGTGTCTAAAGTTATTGTACTTTGTGATTTCTATGGCTTTTAATTATTGAATAAATCTTAATTGTGTG

mRNA sequence

ATGGATGCTACTGAACTTGGGACAAAGCCAATTAGATTGACGTGGAGAACTTGTTACAAGCTGCAAAACAGTGCTTTGGCTGAGGCTTTGATTAAGAGCCCACATGGCAGAACTGAGTTTTTTCAGACAGATTTTGAGAACTCCGATGTTGCTGTTCCGAAGGTTTCAATATGGGATGACGTTCTTTGCAAAGTTGTGGATTTATTTCAGTCTGAGAAATAATCAATTCTCTCTAAGTTTTGATCAAATTTAGATATGATCAACTTTTTTAATTACCTTTAAATATGTGTTTAGAACACTTATAGTGTGTCTAAAGTTATTGTACTTTGTGATTTCTATGGCTTTTAATTATTGAATAAATCTTAATTGTGTG

Coding sequence (CDS)

ATGGATGCTACTGAACTTGGGACAAAGCCAATTAGATTGACGTGGAGAACTTGTTACAAGCTGCAAAACAGTGCTTTGGCTGAGGCTTTGATTAAGAGCCCACATGGCAGAACTGAGTTTTTTCAGACAGATTTTGAGAACTCCGATGTTGCTGTTCCGAAGGTTTCAATATGGGATGACGTTCTTTGCAAAGTTGTGGATTTATTTCAGTCTGAGAAATAA

Protein sequence

MDATELGTKPIRLTWRTCYKLQNSALAEALIKSPHGRTEFFQTDFENSDVAVPKVSIWDDVLCKVVDLFQSEK
Homology
[Close]
BLAST of Carg17965 vs. NCBI nr
Match: KGN66494.1 (hypothetical protein Csa_1G614640 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 3.3e-15
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 7   GTKPIRLTWRTCYKLQNSALAEALIKSPHGRTEFFQTDFENSDVAVPKVSIWDDVLCKV 66
           GT PI L WRTCYKLQ SAL  ALI+SP G+T FFQT+FENS VA  KVS WD+V+CKV
Sbjct: 180 GTSPISLMWRTCYKLQASALPTALIESPQGKTVFFQTNFENSKVADQKVSQWDEVICKV 238

[Close]
BLAST of Carg17965 vs. NCBI nr
Match: KGN66493.1 (hypothetical protein Csa_1G614140 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 6.9e-05
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 1   MDATELGTKPIRLTWRTCYKL-QNSALAEALIKSPHGRTEFFQTDF--ENSDVAVPKVSI 60
           +D    G+ PI +T RTCYKL QN   +EALI+SP G+T FFQ +   ++ D  V KV++
Sbjct: 183 LDKIPKGSAPIVVTCRTCYKLNQNDFGSEALIESPVGKTVFFQIEIFEDDDDDVVQKVTM 242

Query: 61  WDDV 62
           W+ V
Sbjct: 243 WNQV 246

[Close]
BLAST of Carg17965 vs. TrEMBL
Match: tr|A0A0A0LZS0|A0A0A0LZS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614640 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.2e-15
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 7   GTKPIRLTWRTCYKLQNSALAEALIKSPHGRTEFFQTDFENSDVAVPKVSIWDDVLCKV 66
           GT PI L WRTCYKLQ SAL  ALI+SP G+T FFQT+FENS VA  KVS WD+V+CKV
Sbjct: 180 GTSPISLMWRTCYKLQASALPTALIESPQGKTVFFQTNFENSKVADQKVSQWDEVICKV 238

[Close]
BLAST of Carg17965 vs. TrEMBL
Match: tr|A0A0A0LXM3|A0A0A0LXM3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614140 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-05
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 1   MDATELGTKPIRLTWRTCYKL-QNSALAEALIKSPHGRTEFFQTDF--ENSDVAVPKVSI 60
           +D    G+ PI +T RTCYKL QN   +EALI+SP G+T FFQ +   ++ D  V KV++
Sbjct: 183 LDKIPKGSAPIVVTCRTCYKLNQNDFGSEALIESPVGKTVFFQIEIFEDDDDDVVQKVTM 242

Query: 61  WDDV 62
           W+ V
Sbjct: 243 WNQV 246

The following BLAST results are available for this feature:
BLAST of Carg17965 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66494.13.3e-1571.19hypothetical protein Csa_1G614640 [Cucumis sativus][more]
KGN66493.16.9e-0546.88hypothetical protein Csa_1G614140 [Cucumis sativus][more]
BLAST of Carg17965 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg17965 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg17965 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LZS0|A0A0A0LZS0_CUCSA2.2e-1571.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614640 PE=4 SV=1[more]
tr|A0A0A0LXM3|A0A0A0LXM3_CUCSA4.6e-0546.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614140 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17965-RACarg17965-RAmRNA