Carg17933 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17933
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like
Location	Cucurbita_argyrosperma_scaffold_114 : 316145 .. 317223 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAAAATAAAGATCGATCTTAGGATCGAAGCCGTTGAATTGAAATCAGACGGAGAAGATGATCAGAGCCAAATTGCGCGGGTGAAAGCCTGTAATCGGCTTCCAGTTTCTCCGTCTATCCGAACAGAGAATCTGAATAACTATTTATTGCATTGAAATTATTATCAAGAATAGCAAATTAAAGGGACGCAATAAATTATTTTTAAATTTTAAATATTTATTAAATACAAAATTAAAAAATTTAGCGGACTCCTGTAAAACAATGGATTTTTTTTTCACCAAATATTAAATTTCCCACCAATCACCGGAGTTGGTTTCCAGTTCCCGCAAAGCAATACACCGTCTCCTTCACGATCTCACACTCTTCTAGCTTCCTCCAGTAGAAACTTCGGAAAATTCCCGGCAAATCGTCGAGAAATTCTCGCCGGAAGTTTCAGAAGTCGCTGAAAGCTCATGCTGTATGCTCCGTAAATTTTCCGGGAAGGAGACGAAGAAAAGAGTGAGTATTCATCAAAGAGAGTAATTTAGCGAATGTTTTCTTATTTGAGTGATTTTTCTCGAATCAGGTTTTTTTTATAGGCATTGAGCTCATTTCCCCTAATCTGTCTCCAATCAATTTTACGTCTCTGAAACTAAGTTGTTAAATCTGTTTATGTCAATTGCGTATTAGCTTTCTTTTTCTCATGCTCTTTAACTCGGATATGACTTTTGAGAATCAGGAAATGGAATTTGATGGATTTTATTGCTTATTGTTTGTTCTCTTTTGGCATTCTCGAGTTAATAATGCATTTATTTGTCTGTAAATGATTTCAGGGGAGTTCTTTGATGGCTTGGCTGTTGGTTATTACTGCCTTCGTTGTAATTTGGATTGCTTCATTATACAAAAATTTTCATGCATCAGTTTCATCTTCCAGGAGTGCTTTCTTAAATGGTGGATCATCACGGATTGTTTTGTCAAATTTTCTTTCTTCTTTAACACTAAAATGCTGTTCTCTGTCATCCTTTGATATCTAGATGGCACTCAAAAGAGAAATATCTTGCTGGTCATTGCCCATCCAGATGATGAGTCTATGTAA

mRNA sequence

ATGCTTAAAATAAAGATCGATCTTAGGATCGAAGCCGTTGAATTGAAATCAGACGGAGAAGATGATCAGAGCCAAATTGCGCGGGTGAAAGCCTTAGAAACTTCGGAAAATTCCCGGCAAATCGTCGAGAAATTCTCGCCGGAAGTTTCAGAAGTCGCTGAAAGCTCATGCTGTATGCTCCGTAAATTTTCCGGGAAGGAGACGAAGAAAAGAGGGAGTTCTTTGATGGCTTGGCTGTTGGTTATTACTGCCTTCGTTGTAATTTGGATTGCTTCATTATACAAAAATTTTCATGCATCAGTTTCATCTTCCAGGAGTGCTTTCTTAAATGATGGCACTCAAAAGAGAAATATCTTGCTGGTCATTGCCCATCCAGATGATGAGTCTATGTAA

Coding sequence (CDS)

ATGCTTAAAATAAAGATCGATCTTAGGATCGAAGCCGTTGAATTGAAATCAGACGGAGAAGATGATCAGAGCCAAATTGCGCGGGTGAAAGCCTTAGAAACTTCGGAAAATTCCCGGCAAATCGTCGAGAAATTCTCGCCGGAAGTTTCAGAAGTCGCTGAAAGCTCATGCTGTATGCTCCGTAAATTTTCCGGGAAGGAGACGAAGAAAAGAGGGAGTTCTTTGATGGCTTGGCTGTTGGTTATTACTGCCTTCGTTGTAATTTGGATTGCTTCATTATACAAAAATTTTCATGCATCAGTTTCATCTTCCAGGAGTGCTTTCTTAAATGATGGCACTCAAAAGAGAAATATCTTGCTGGTCATTGCCCATCCAGATGATGAGTCTATGTAA

Protein sequence

MLKIKIDLRIEAVELKSDGEDDQSQIARVKALETSENSRQIVEKFSPEVSEVAESSCCMLRKFSGKETKKRGSSLMAWLLVITAFVVIWIASLYKNFHASVSSSRSAFLNDGTQKRNILLVIAHPDDESM

Homology

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BLAST of Carg17933 vs. NCBI nr
Match: XP_022921645.1 (N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 139.4 bits (350), Expect = 8.5e-30
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 59  MLRKFSGKETKKRGSSLMAWLLVITAFVVIWIASLYKNFHASVSSSRSAFLNDGTQKRNI 118
           MLRKFSGKETKKRGSSLMAWLLVITAFVVIWIASL KNFHASVSSSRSAFLNDGTQKRNI
Sbjct: 1   MLRKFSGKETKKRGSSLMAWLLVITAFVVIWIASLCKNFHASVSSSRSAFLNDGTQKRNI 60

Query: 119 LLVIAHPDDESM 131
           LLVIAHPDDESM
Sbjct: 61  LLVIAHPDDESM 72

[Close]

BLAST of Carg17933 vs. NCBI nr
Match: XP_023515925.1 (N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 2.3e-27
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 59  MLRKFSGKETKKRGSSLMAWLLVITAFVVIWIASLYKNFHASVSSSRSAFLNDGT-QKRN 118
           MLRKFSGKETKKRGSSLMAWLLVITAFVVIWIASL K FHASVSSSRSAFLNDGT QKRN
Sbjct: 1   MLRKFSGKETKKRGSSLMAWLLVITAFVVIWIASLCKIFHASVSSSRSAFLNDGTPQKRN 60

Query: 119 ILLVIAHPDDESM 131
           ILLVIAHPDDESM
Sbjct: 61  ILLVIAHPDDESM 73

[Close]

BLAST of Carg17933 vs. NCBI nr
Match: XP_022987980.1 (N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 127.1 bits (318), Expect = 4.4e-26
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 59  MLRKFSGKETKKRGSSLMAWLLVITAFVVIWIASLYKNFHASVSSSRSAFLNDGT-QKRN 118
           MLRKFS KETKKRGSSLMAWLLVITAFVVIWIASL K FHASVSSSRSAFLNDGT QK+N
Sbjct: 1   MLRKFSWKETKKRGSSLMAWLLVITAFVVIWIASLCKIFHASVSSSRSAFLNDGTPQKKN 60

Query: 119 ILLVIAHPDDESM 131
           ILLVIAHPDDESM
Sbjct: 61  ILLVIAHPDDESM 73

[Close]

BLAST of Carg17933 vs. NCBI nr
Match: XP_022135568.1 (N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Momordica charantia] >XP_022135569.1 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 5.3e-16
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 76  MAWLLVITAFVVIWIASLYKNFHASVSSSRSAFLN-DGTQKRNILLVIAHPDDESM 131
           MAWLLVITAFVVIW+ASL K  H SVSSSRSAFLN DGTQKRN+LLV+AHPDDESM
Sbjct: 1   MAWLLVITAFVVIWVASLCKILHISVSSSRSAFLNSDGTQKRNVLLVVAHPDDESM 56

[Close]

BLAST of Carg17933 vs. NCBI nr
Match: XP_006355219.1 (PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase isoform X2 [Solanum tuberosum])

HSP 1 Score: 73.2 bits (178), Expect = 7.5e-10
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 76  MAWLLVITAFVVIWIASLYKNFHASVSSSRSAFLNDG--TQKRNILLVIAHPDDESM 131
           M WL++I   VV+W+ASL+K  H S+S+S++A LNDG   +KRN+LLVIAHPDDESM
Sbjct: 1   MEWLVIIITLVVLWVASLFKILHESLSASQAAVLNDGGVFRKRNVLLVIAHPDDESM 57

[Close]

BLAST of Carg17933 vs. TAIR10
Match: AT3G58130.1 (N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 76  MAWLLVITAFVVIWIASLYKNFHASVSSSRSAFLNDG--TQKRNILLVIAHPDDESM 131
           MAWL+V  + +VIW+AS  K F  + S S +A L+DG   QK+N+L VIAHPDDESM
Sbjct: 1   MAWLVVSVSLIVIWLASFCKIFFRATSISGAAILDDGKTPQKKNVLFVIAHPDDESM 57

[Close]

BLAST of Carg17933 vs. TAIR10
Match: AT2G27340.2 (N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-08
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 79  LLVITAFVVIWIASLYKNFHASVSSSRSAFLNDGTQKRNILLVIAHPDDESM 131
           ++ ++  VVIW+AS +K F  + S SR+  L+DG  K+N++ VIAHPDDESM
Sbjct: 3   VVFLSLIVVIWVASFFKIFFRATSISRATILDDG--KKNVMFVIAHPDDESM 52

[Close]

BLAST of Carg17933 vs. TrEMBL
Match: tr|A0A0V0HY29|A0A0V0HY29_SOLCH (Putative N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 76  MAWLLVITAFVVIWIASLYKNFHASVSSSRSAFLNDG--TQKRNILLVIAHPDDESM 131
           M WL++I   VV+W+ASL+K  H S+S+S++A LNDG   +KRN+LLVIAHPDDESM
Sbjct: 1   MEWLVIIITLVVLWVASLFKILHESLSASQAAVLNDGGVFRKRNVLLVIAHPDDESM 57

[Close]

BLAST of Carg17933 vs. TrEMBL
Match: tr|A0A0V0HUW0|A0A0V0HUW0_SOLCH (Putative N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 76  MAWLLVITAFVVIWIASLYKNFHASVSSSRSAFLNDG--TQKRNILLVIAHPDDESM 131
           M WL++I   VV+W+ASL+K  H S+S+S++A LNDG   +KRN+LLVIAHPDDESM
Sbjct: 1   MEWLVIIITLVVLWVASLFKILHESLSASQAAVLNDGGVFRKRNVLLVIAHPDDESM 57

[Close]

BLAST of Carg17933 vs. TrEMBL
Match: tr|M1CW73|M1CW73_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102587734 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 76  MAWLLVITAFVVIWIASLYKNFHASVSSSRSAFLNDG--TQKRNILLVIAHPDDESM 131
           M WL++I   VV+W+ASL+K  H S+S+S++A LNDG   +KRN+LLVIAHPDDESM
Sbjct: 1   MEWLVIIITLVVLWVASLFKILHESLSASQAAVLNDGGVFRKRNVLLVIAHPDDESM 57

[Close]

BLAST of Carg17933 vs. TrEMBL
Match: tr|M1CW74|M1CW74_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102587734 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 76  MAWLLVITAFVVIWIASLYKNFHASVSSSRSAFLNDG--TQKRNILLVIAHPDDESM 131
           M WL++I   VV+W+ASL+K  H S+S+S++A LNDG   +KRN+LLVIAHPDDESM
Sbjct: 1   MEWLVIIITLVVLWVASLFKILHESLSASQAAVLNDGGVFRKRNVLLVIAHPDDESM 57

[Close]

BLAST of Carg17933 vs. TrEMBL
Match: tr|A0A0A0LP92|A0A0A0LP92_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012160 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.5e-10
Identity = 43/60 (71.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 72  GSSLMAWLLVITAFVVIWIASLYKNFHASVSSSRSAFLNDGT-QKRNILLVIAHPDDESM 131
           GS LM W LVI+A VVIWIASL K F    S S   FLND T QKRNILLVIAHPDDESM
Sbjct: 28  GSHLMGWFLVISALVVIWIASLCKIFS---SYSSGGFLNDVTPQKRNILLVIAHPDDESM 84

The following BLAST results are available for this feature:

BLAST of Carg17933 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921645.1	8.5e-30	98.61	N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X1 [Cucurb...	[more]
XP_023515925.1	2.3e-27	95.89	N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X1 [Cucurb...	[more]
XP_022987980.1	4.4e-26	93.15	N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X1 [Cucurb...	[more]
XP_022135568.1	5.3e-16	85.71	N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Momord...	[more]
XP_006355219.1	7.5e-10	61.40	PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase iso...	[more]

BLAST of Carg17933 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58130.1	1.4e-10	56.14	N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein	[more]
AT2G27340.2	2.9e-08	50.00	N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein	[more]

BLAST of Carg17933 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg17933 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0V0HY29\|A0A0V0HY29_SOLCH	4.9e-10	61.40	Putative N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like OS=Solanu...	[more]
tr\|A0A0V0HUW0\|A0A0V0HUW0_SOLCH	4.9e-10	61.40	Putative N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like OS=Solanu...	[more]
tr\|M1CW73\|M1CW73_SOLTU	4.9e-10	61.40	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102587734 PE=4 SV=1	[more]
tr\|M1CW74\|M1CW74_SOLTU	4.9e-10	61.40	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102587734 PE=4 SV=1	[more]
tr\|A0A0A0LP92\|A0A0A0LP92_CUCSA	6.5e-10	71.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012160 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17933-RA	Carg17933-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17933	Wax gourd	carwgoB0562
Carg17933	Cucumber (Gy14) v2	carcgybB0470
Carg17933	Cucumber (Gy14) v1	carcgyB0533
Carg17933	Cucurbita maxima (Rimu)	carcmaB0643
Carg17933	Cucurbita maxima (Rimu)	carcmaB0640
Carg17933	Cucurbita moschata (Rifu)	carcmoB0622
Carg17933	Cucurbita moschata (Rifu)	carcmoB0624
Carg17933	Cucurbita pepo (Zucchini)	carcpeB0646
Carg17933	Cucurbita pepo (Zucchini)	carcpeB0649
Carg17933	Wild cucumber (PI 183967)	carcpiB0499
Carg17933	Cucumber (Chinese Long) v2	carcuB0493
Carg17933	Cucumber (Chinese Long) v3	carcucB0496
Carg17933	Bottle gourd (USVL1VR-Ls)	carlsiB419
Carg17933	Melon (DHL92) v3.5.1	carmeB0468
Carg17933	Melon (DHL92) v3.6.1	carmedB0471
Carg17933	Watermelon (Charleston Gray)	carwcgB0450
Carg17933	Watermelon (97103) v1	carwmB0460
Carg17933	Watermelon (97103) v2	carwmbB0486