Carg17850 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17850
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase RHF2A
Location	Cucurbita_argyrosperma_scaffold_070 : 525697 .. 528559 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGGTTGGACGATGATCTCATCTTCGACGCATGTGAGTTTCTCTCGCTCAATGAGAAAATGATCGTCATGTTTATGAAATTAGATGAGCAGTTGATATATTATTCTATATGATAAATTAGTTCAATATTCTTTTTTGTTCAGATTCTCGTAACCCTTATCGCTACTTCTCAATCTCGATTGCTCACGTGAAGATGATGAAGAACAAGATGTTCCGGAGTATTGATCAAGGTAGCATCACCCAGGTTGAGTTTTTTCGACGATGGTTAGTTTTTTAGTTAAAAAAAACCTAAGATTTTATCGGGAAATGTACCTGTGGTAATTTGGTAATTTGAGAGAGAGTAATTATGGAAAAATTTTAAAATAGATATATTTTAAAATTTGTTTAAATTGGTATTAGATTTACTAGGGAGTGGAGTGTAGGGTAATTTAAGATATGGATGACCTAGATTGACTAAATATTGACTTTTTGTTGACTTTAAATATGGATGGGTTGATTCCCATTCTTGCCCCTGGTAAATAATCAATATTCCTTATGCTTACCGTCATTTCTTATTGTATGGATAAAGTCAATGGTCAAATATTAAAGATATTGACTAATCAAATTCAACTTTAAAATAAGTTTAAAGAATAAATTAGTAATTTGATATAAATTGAAAATTTCAAAATGTTGAAAAAATATTATTTAGACGATAGAAATATTTATTCCGATGTTACATTAATAATTAAAATTTTATAAATAAAATATTTATAAATTATGTAATTAACCTCAGTTCTAAATGTCAAATATTCTTAATTTTAATAATAATTATAAAAGTAGAAAAAAGAAATAAGAGAAATTAGGTCATCATTTTCGAGAGAGACCGTCTTCTCAACAGTCTGATACTTCCAGTCGACTGCTCTATAACGGGCATCCTTGTTCTTTGGGCTATGCTCGCTTGTATACACTTCGAGCCCTCTCCTCAACTGTCTGATACATTTAGTCGATGCTCTATAACTGGCTTCCTCATTCTTTGGGCTATGCTCGCTTGTACACACTCCGAGCCCTCTTCTCAACAGTCTGATACTTCTAGTCGACTGCTCTATAACGGGCTTCCTCGTTCTTTGGGCTATGCTCGCTTGTACACACTCCGAGCCCTCTTCTCAACAGTCTGATACTTCTAGTCGACTGCTCTATAACAGGATTCCTCATTCTTTGGGCTATGCTCGCTCTATACAATCTAATCCTGTAAGTAATAATAGATCGGGTGAGATTGGGTTGTTACCTTACTTTTGAGATTAGGAAAAAAAGAATACAGAGGCAAATTCCCGATTTTCTAAAAATTCAACTTATCTCAAATAAAAATAAATTAAGCTAATTAGGTAATCTAAATTGGTCAGATTCTCAAATTATTTAAGCGTGTTATTTTTTTTTTTTTCTAATATAAAAATAGGAGAACGAGAGAGAGAGAGAGAATGACGTAATTACCACAAAAATTGGCCACGCGTTGAGAAAATGAACCCATCAGATTCATACAACAAATACATTCATTACTGAGCCGACGACCGACCAAACCCAAACTCAGCACTCAGCACTCAGCAGCAGCCTTTTCCAAGTCAAGACCGGAGCCTCCACCGCCACCTCCGCCTCAATTCTCCTCCTCCTCCTTCCCCTAGGGTTTCTCTGATTCCAATCCATTCAACATCGTCCTGCGCATGCTCGATTCACATGGAGGTACTTCCATCCCCTAATTTTCTCTCGTCTTCACGTCTTTTGCTTCTTTCTTGTTTTTGTTGCTTTGACGTTTCTATTTTTTAAATTCTCTCTCTCTTCGATGAAGATTGTTCTTTCTTGGATTACTTTTTGTATTCTACCTACTTTTCATCATGTTTTTGGATTCCATTTTTCTCGACTGTTATTCGGATGATAAAGTGGATGTGGATGGATATATTCTGTTACTGGATTCTTTTTCTTTTCTTATCTTGTTGTTTTCATGGAGTAACAGATGTGGAGATGAGCAACTTATCTGTCTCTTTCTAGTGTGTTTGCCTCTTGAATCTGCTTTCTAGCTGTTTCTGTATGTAGTTCTTCCGATCTCTGTTTCTCTTCTCTTTGGTGCCGGATTATTGCTTGTAGCTCCGCAAATTTGTGTGATTAAGCTATTTTGTTATCGTTTGGATTGGCTGTATGTGCGTGATTTAATTCACTGGAAATGTATGTCGTATCTCCAAATTATACCTGATGGTAGTGTATATCATTTCCTTGTTTAGTTGTTTATAAGTCACGCACTAGATCATGTTTTTTTGTTTTGTTCATACAGTCTCCAACTATGGACGAAACAAAAAAATCTGAAGCGCATTTGACATCAGCTGCGGCTTTTGTCGAAGGTGGAATCCAGGATGCTTGTGATGATGCTTGCAGTATATGTTTAGAGAACTTCTGTGACAGTGATCCTTCAACGGTAATACTTATATTGTGATTTGATACTTAATGGGACGTCAGATGGTTTCTGTTCCACTTAGTTTCTATATTTTGTGCAGATGACCAGTTGCAAACATGAGTTTCATCTGCAGTGCGTTCTTGAATGGTATTTGTTTATTTTTTTGCAATATCTGTTTGAGATATCAGATTAACTCGTGAACACCTTGTTTTACTATTGATATATGATAACAAAGACGGTGGAAGGATGTTTGGAGACTACCAAATACCTTCCTCTAATTGTGGCTTCTTTTTGTTATTAAACAACACTTTTTGCTACTCTTAAGTCCAATTGATACACGATTTTGCGACTACTGGATATACTTGGGTATTCCATTTTTTATTTTGTATTTTTACGTCAATCAACAAAAAGTATCTTCTTTCCTTTTTCCTTTGAAAAGG

mRNA sequence

ATGTTTGGGTTGGACGATGATCTCATCTTCGACGCATATTCTCGTAACCCTTATCGCTACTTCTCAATCTCGATTGCTCACGTGAAGATGATGAAGAACAAGATGTTCCGGAGTATTGATCAAGGATTCCTCATTCTTTGGGCTATGCTCGCTCTATACAATCTAATCCTGGTTTCTCTGATTCCAATCCATTCAACATCGTCCTGCGCATGCTCGATTCACATGGAGTCTCCAACTATGGACGAAACAAAAAAATCTGAAGCGCATTTGACATCAGCTGCGGCTTTTGTCGAAGGTGGAATCCAGGATGCTTGTGATGATGCTTGCAGTATATGTTTAGAGAACTTCTGTGACAGTGATCCTTCAACGATGACCAGTTGCAAACATGAGTTTCATCTGCAGTGCGTTCTTGAATGGTATTTGTTTATTTTTTTGCAATATCTGTTTGAGATATCAGATTAACTCGTGAACACCTTGTTTTACTATTGATATATGATAACAAAGACGGTGGAAGGATGTTTGGAGACTACCAAATACCTTCCTCTAATTGTGGCTTCTTTTTGTTATTAAACAACACTTTTTGCTACTCTTAAGTCCAATTGATACACGATTTTGCGACTACTGGATATACTTGGGTATTCCATTTTTTATTTTGTATTTTTACGTCAATCAACAAAAAGTATCTTCTTTCCTTTTTCCTTTGAAAAGG

Coding sequence (CDS)

ATGTTTGGGTTGGACGATGATCTCATCTTCGACGCATATTCTCGTAACCCTTATCGCTACTTCTCAATCTCGATTGCTCACGTGAAGATGATGAAGAACAAGATGTTCCGGAGTATTGATCAAGGATTCCTCATTCTTTGGGCTATGCTCGCTCTATACAATCTAATCCTGGTTTCTCTGATTCCAATCCATTCAACATCGTCCTGCGCATGCTCGATTCACATGGAGTCTCCAACTATGGACGAAACAAAAAAATCTGAAGCGCATTTGACATCAGCTGCGGCTTTTGTCGAAGGTGGAATCCAGGATGCTTGTGATGATGCTTGCAGTATATGTTTAGAGAACTTCTGTGACAGTGATCCTTCAACGATGACCAGTTGCAAACATGAGTTTCATCTGCAGTGCGTTCTTGAATGGTATTTGTTTATTTTTTTGCAATATCTGTTTGAGATATCAGATTAA

Protein sequence

MFGLDDDLIFDAYSRNPYRYFSISIAHVKMMKNKMFRSIDQGFLILWAMLALYNLILVSLIPIHSTSSCACSIHMESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLEWYLFIFLQYLFEISD

Homology

[Close]

BLAST of Carg17850 vs. NCBI nr
Match: XP_004139068.1 (PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X2 [Cucumis sativus] >KGN66567.1 hypothetical protein Csa_1G629730 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 5.9e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 75  MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 134
           MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ
Sbjct: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60

Query: 135 CVLEW 140
           CVLEW
Sbjct: 61  CVLEW 65

[Close]

BLAST of Carg17850 vs. NCBI nr
Match: XP_008450319.1 (PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X2 [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 5.9e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 75  MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 134
           MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ
Sbjct: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60

Query: 135 CVLEW 140
           CVLEW
Sbjct: 61  CVLEW 65

[Close]

BLAST of Carg17850 vs. NCBI nr
Match: XP_022961102.1 (E3 ubiquitin-protein ligase RHF2A-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 140.2 bits (352), Expect = 5.9e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 75  MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 134
           MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ
Sbjct: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60

Query: 135 CVLEW 140
           CVLEW
Sbjct: 61  CVLEW 65

[Close]

BLAST of Carg17850 vs. NCBI nr
Match: XP_022961100.1 (E3 ubiquitin-protein ligase RHF2A-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 140.2 bits (352), Expect = 5.9e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 75  MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 134
           MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ
Sbjct: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60

Query: 135 CVLEW 140
           CVLEW
Sbjct: 61  CVLEW 65

[Close]

BLAST of Carg17850 vs. NCBI nr
Match: XP_022988151.1 (E3 ubiquitin-protein ligase RHF2A-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 140.2 bits (352), Expect = 5.9e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 75  MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 134
           MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ
Sbjct: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60

Query: 135 CVLEW 140
           CVLEW
Sbjct: 61  CVLEW 65

[Close]

BLAST of Carg17850 vs. TAIR10
Match: AT5G22000.2 (RING-H2 group F2A)

HSP 1 Score: 112.1 bits (279), Expect = 3.1e-25
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 83  TKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLEW 140
           T  SE HLTSAAAFVEGGIQDACDDACSICLE+FC+SDPST+TSCKHE+HLQC+LEW
Sbjct: 7   TTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEW 63

[Close]

BLAST of Carg17850 vs. TAIR10
Match: AT4G14220.1 (RING-H2 group F1A)

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-09
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 109 CSICLENFCDSDPSTMTSCKHEFHLQCVLEW 140
           CSICLE F   DPST+TSCKHE+HLQC++EW
Sbjct: 46  CSICLEPFTLQDPSTVTSCKHEYHLQCIIEW 76

[Close]

BLAST of Carg17850 vs. TAIR10
Match: AT4G00335.1 (RING-H2 finger B1A)

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 0


Query: 103 DACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLEW 140
           D  +D C IC E++   +P   T C+HEFHL C+LEW
Sbjct: 133 DEEEDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEW 169

[Close]

BLAST of Carg17850 vs. TAIR10
Match: AT3G02290.1 (RING/U-box superfamily protein)

HSP 1 Score: 45.8 bits (107), Expect = 2.7e-05
Identity = 15/34 (44.12%), Postives = 20/34 (58.82%), Query Frame = 0


Query: 106 DDACSICLENFCDSDPSTMTSCKHEFHLQCVLEW 140
           +D C  CLE +   +P  +T C H FHL C+ EW
Sbjct: 178 EDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEW 211

[Close]

BLAST of Carg17850 vs. TAIR10
Match: AT5G15790.1 (RING/U-box superfamily protein)

HSP 1 Score: 45.8 bits (107), Expect = 2.7e-05
Identity = 15/34 (44.12%), Postives = 20/34 (58.82%), Query Frame = 0


Query: 106 DDACSICLENFCDSDPSTMTSCKHEFHLQCVLEW 140
           +D C  CLE +   +P  +T C H FHL C+ EW
Sbjct: 179 EDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEW 212

[Close]

BLAST of Carg17850 vs. Swiss-Prot
Match: sp|Q9ZT42|RHF2A_ARATH (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-24
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 82  ETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLEW 140
           ET  SE HLTSAAAFVEGGIQDACDDACSICLE+FC+SDPST+TSCKHE+HLQC+LEW
Sbjct: 6   ETTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEW 63

[Close]

BLAST of Carg17850 vs. Swiss-Prot
Match: sp|Q4TU14|RHF1A_ARATH (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-08
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 109 CSICLENFCDSDPSTMTSCKHEFHLQCVLEW 140
           CSICLE F   DPST+TSCKHE+HLQC++EW
Sbjct: 46  CSICLEPFTLQDPSTVTSCKHEYHLQCIIEW 76

[Close]

BLAST of Carg17850 vs. Swiss-Prot
Match: sp|Q2HIJ8|RHB1A_ARATH (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.9e-04
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 0


Query: 103 DACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLEW 140
           D  +D C IC E++   +P   T C+HEFHL C+LEW
Sbjct: 133 DEEEDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEW 169

[Close]

BLAST of Carg17850 vs. Swiss-Prot
Match: sp|Q8LE94|RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.9e-04
Identity = 15/34 (44.12%), Postives = 20/34 (58.82%), Query Frame = 0


Query: 106 DDACSICLENFCDSDPSTMTSCKHEFHLQCVLEW 140
           +D C  CLE +   +P  +T C H FHL C+ EW
Sbjct: 178 EDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEW 211

[Close]

BLAST of Carg17850 vs. TrEMBL
Match: tr|A0A1S3BPZ3|A0A1S3BPZ3_CUCME (E3 ubiquitin-protein ligase RHF2A-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491963 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.9e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 75  MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 134
           MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ
Sbjct: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60

Query: 135 CVLEW 140
           CVLEW
Sbjct: 61  CVLEW 65

[Close]

BLAST of Carg17850 vs. TrEMBL
Match: tr|A0A0A0M0B5|A0A0A0M0B5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629730 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.9e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 75  MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 134
           MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ
Sbjct: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60

Query: 135 CVLEW 140
           CVLEW
Sbjct: 61  CVLEW 65

[Close]

BLAST of Carg17850 vs. TrEMBL
Match: tr|A0A1S3BPM2|A0A1S3BPM2_CUCME (E3 ubiquitin-protein ligase RHF2A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491963 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.3e-29
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 75  MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 134
           + SPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ
Sbjct: 4   LNSPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 63

Query: 135 CVLEW 140
           CVLEW
Sbjct: 64  CVLEW 68

[Close]

BLAST of Carg17850 vs. TrEMBL
Match: tr|A0A1S3BP10|A0A1S3BP10_CUCME (E3 ubiquitin-protein ligase RHF2A-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491963 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.1e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 80  MDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLEW 139
           MDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLEW
Sbjct: 1   MDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLEW 60

[Close]

BLAST of Carg17850 vs. TrEMBL
Match: tr|M5WB81|M5WB81_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G148500 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.9e-25
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 75  MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 134
           ME P M+ET KSEAHLTSAAAFVEGGIQ+ACDDACSICLE FCDSDPST+T CKHEFHLQ
Sbjct: 1   MEVPGMEETNKSEAHLTSAAAFVEGGIQEACDDACSICLEAFCDSDPSTLTGCKHEFHLQ 60

Query: 135 CVLEW 140
           C+LEW
Sbjct: 61  CILEW 65

The following BLAST results are available for this feature:

BLAST of Carg17850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139068.1	5.9e-30	100.00	PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X2 [Cucumis sativus] >...	[more]
XP_008450319.1	5.9e-30	100.00	PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X2 [Cucumis melo]	[more]
XP_022961102.1	5.9e-30	100.00	E3 ubiquitin-protein ligase RHF2A-like isoform X3 [Cucurbita moschata]	[more]
XP_022961100.1	5.9e-30	100.00	E3 ubiquitin-protein ligase RHF2A-like isoform X1 [Cucurbita moschata]	[more]
XP_022988151.1	5.9e-30	100.00	E3 ubiquitin-protein ligase RHF2A-like isoform X3 [Cucurbita maxima]	[more]

BLAST of Carg17850 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22000.2	3.1e-25	85.96	RING-H2 group F2A	[more]
AT4G14220.1	3.1e-09	74.19	RING-H2 group F1A	[more]
AT4G00335.1	1.6e-05	48.65	RING-H2 finger B1A	[more]
AT3G02290.1	2.7e-05	44.12	RING/U-box superfamily protein	[more]
AT5G15790.1	2.7e-05	44.12	RING/U-box superfamily protein	[more]

BLAST of Carg17850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZT42\|RHF2A_ARATH	1.5e-24	86.21	E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 ...	[more]
sp\|Q4TU14\|RHF1A_ARATH	5.6e-08	74.19	E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 ...	[more]
sp\|Q2HIJ8\|RHB1A_ARATH	2.9e-04	48.65	Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
sp\|Q8LE94\|RING3_ARATH	4.9e-04	44.12	E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g022...	[more]

BLAST of Carg17850 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPZ3\|A0A1S3BPZ3_CUCME	3.9e-30	100.00	E3 ubiquitin-protein ligase RHF2A-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0A0M0B5\|A0A0A0M0B5_CUCSA	3.9e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629730 PE=4 SV=1	[more]
tr\|A0A1S3BPM2\|A0A1S3BPM2_CUCME	3.3e-29	96.92	E3 ubiquitin-protein ligase RHF2A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1S3BP10\|A0A1S3BP10_CUCME	3.1e-27	100.00	E3 ubiquitin-protein ligase RHF2A-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|M5WB81\|M5WB81_PRUPE	2.9e-25	86.15	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G148500 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17850-RA	Carg17850-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF17123	zf-RING_11	coord: 109..136 e-value: 1.3E-7 score: 31.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 109..139 score: 8.831
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 98..145 e-value: 1.9E-8 score: 35.3
None	No IPR available	PANTHER	PTHR44204:SF1	SUBFAMILY NOT NAMED	coord: 80..139
None	No IPR available	PANTHER	PTHR44204	FAMILY NOT NAMED	coord: 80..139
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 102..140

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17850	Watermelon (97103) v2	carwmbB1019
Carg17850	Wax gourd	carwgoB1135
Carg17850	Silver-seed gourd	carcarB640
Carg17850	Cucumber (Gy14) v2	carcgybB0955
Carg17850	Cucumber (Gy14) v1	carcgyB1085
Carg17850	Cucurbita maxima (Rimu)	carcmaB1335
Carg17850	Cucurbita maxima (Rimu)	carcmaB1336
Carg17850	Cucurbita moschata (Rifu)	carcmoB1297
Carg17850	Cucurbita moschata (Rifu)	carcmoB1298
Carg17850	Cucurbita pepo (Zucchini)	carcpeB1341
Carg17850	Cucurbita pepo (Zucchini)	carcpeB1342
Carg17850	Wild cucumber (PI 183967)	carcpiB1005
Carg17850	Cucumber (Chinese Long) v2	carcuB0982
Carg17850	Cucumber (Chinese Long) v3	carcucB1010
Carg17850	Bottle gourd (USVL1VR-Ls)	carlsiB886
Carg17850	Melon (DHL92) v3.5.1	carmeB0947
Carg17850	Melon (DHL92) v3.6.1	carmedB0953
Carg17850	Watermelon (Charleston Gray)	carwcgB0944
Carg17850	Watermelon (97103) v1	carwmB0969