Carg17830 (gene) Silver-seed gourd

Overview
NameCarg17830
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING-type E3 ubiquitin transferase
LocationCucurbita_argyrosperma_scaffold_070 : 395686 .. 396020 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGGACCAGCTTTGTGAATGTGCCGAAGGTCGGGCTGAGCTGCTCCGACACGGAGGCGGGATGGCGGTCGTGGCGAGGAAGATTCTTCGAGTGTCGAATTTTAGCAACGAGAAGGCGGTTAGGATTTTGTACCATGTTTGTAAGAACAACGTTGGGAATTTCGGAGTTGCTGAGGAGATGGTGGAGGTTGGGGCTGTTGGAAAGCTTTGTTTGATGCTTCAAATTGGTGGAAGTTTGAAGACTAATGAAAGAATCAAGGAAATTCTTCATTTTCTTCGATGTATTTTCAAGGGTACGAAGTGTGTTCTCGTTCTTCCGTCCGGGTTTGA

mRNA sequence

ATGGCCATGGACCAGCTTTGTGAATGTGCCGAAGGTCGGGCTGAGCTGCTCCGACACGGAGGCGGGATGGCGGTCGTGGCGAGGAAGATTCTTCGAGTGTCGAATTTTAGCAACGAGAAGGCGGTTAGGATTTTGTACCATGTTTGTAAGAACAACGTTGGGAATTTCGGAGTTGCTGAGGAGATGGTGGAGGTTGGGGCTGTTGGAAAGCTTTGTTTGATGCTTCAAATTGGTGGAAGTTTGAAGACTAATGAAAGAATCAAGGAAATTCTTCATTTTCTTCGATGGTACGAAGTGTGTTCTCGTTCTTCCGTCCGGGTTTGA

Coding sequence (CDS)

ATGGCCATGGACCAGCTTTGTGAATGTGCCGAAGGTCGGGCTGAGCTGCTCCGACACGGAGGCGGGATGGCGGTCGTGGCGAGGAAGATTCTTCGAGTGTCGAATTTTAGCAACGAGAAGGCGGTTAGGATTTTGTACCATGTTTGTAAGAACAACGTTGGGAATTTCGGAGTTGCTGAGGAGATGGTGGAGGTTGGGGCTGTTGGAAAGCTTTGTTTGATGCTTCAAATTGGTGGAAGTTTGAAGACTAATGAAAGAATCAAGGAAATTCTTCATTTTCTTCGATGGTACGAAGTGTGTTCTCGTTCTTCCGTCCGGGTTTGA

Protein sequence

MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLRWYEVCSRSSVRV
Homology
[Close]
BLAST of Carg17830 vs. NCBI nr
Match: XP_022961129.1 (E3 ubiquitin-protein ligase PUB23-like [Cucurbita moschata])

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1   MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAE 60
           MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAE
Sbjct: 287 MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAE 346

Query: 61  EMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR 96
           EMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
Sbjct: 347 EMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR 381

[Close]
BLAST of Carg17830 vs. NCBI nr
Match: XP_023516896.1 (E3 ubiquitin-protein ligase PUB22-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1   MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAE 60
           MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAE
Sbjct: 287 MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAE 346

Query: 61  EMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR 96
           EMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
Sbjct: 347 EMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR 381

[Close]
BLAST of Carg17830 vs. NCBI nr
Match: XP_022987530.1 (E3 ubiquitin-protein ligase PUB23-like [Cucurbita maxima])

HSP 1 Score: 189.5 bits (480), Expect = 5.9e-45
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1   MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAE 60
           MAMD LCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAE
Sbjct: 287 MAMDHLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAE 346

Query: 61  EMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR 96
           EMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
Sbjct: 347 EMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR 381

[Close]
BLAST of Carg17830 vs. NCBI nr
Match: XP_008450285.1 (PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36
Identity = 77/93 (82.80%), Postives = 85/93 (91.40%), Query Frame = 0 

Query: 3   MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEM 62
           +D+LCECAEGRAELL+HGGGMAVV RKILRVSN  NEKAVRILY+VCKNNVGN GVAEEM
Sbjct: 294 LDRLCECAEGRAELLQHGGGMAVVGRKILRVSNLGNEKAVRILYNVCKNNVGNCGVAEEM 353

Query: 63  VEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR 96
           VEVG V KLCLMLQ+GG+LKT ER+KEILH L+
Sbjct: 354 VEVGVVAKLCLMLQVGGNLKTRERVKEILHLLQ 386

[Close]
BLAST of Carg17830 vs. NCBI nr
Match: XP_023520665.1 (E3 ubiquitin-protein ligase PUB22-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.8 bits (382), Expect = 1.4e-33
Identity = 72/93 (77.42%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 3   MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEM 62
           +D+LCECAEGR ELLRHGGG+AVVARKILRVSN +NEKAVRILY+VCKNNVGNFGV EEM
Sbjct: 290 LDRLCECAEGRVELLRHGGGVAVVARKILRVSNLTNEKAVRILYNVCKNNVGNFGVFEEM 349

Query: 63  VEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR 96
           V VGAVGKLC ++++GGSLK  ER+K ILH ++
Sbjct: 350 VVVGAVGKLCAVIEVGGSLKMIERVKVILHLIQ 382

[Close]
BLAST of Carg17830 vs. TAIR10
Match: AT3G52450.1 (plant U-box 22)

HSP 1 Score: 91.3 bits (225), Expect = 4.0e-19
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 1   MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNF---- 60
           + +D LC+CAEGRAE L HG  +AVV++KILRVS  ++E+AVR+L      +VG F    
Sbjct: 323 VVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVSQITSERAVRVLL-----SVGRFCATP 382

Query: 61  GVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEI--LHFLRWYE 99
            + +EM+++G V KLCL+LQ+    KT E+ KE+  LH   W E
Sbjct: 383 SLLQEMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKLHARVWRE 421

[Close]
BLAST of Carg17830 vs. TAIR10
Match: AT2G35930.1 (plant U-box 23)

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-17
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 0 

Query: 1   MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNF---- 60
           + +D LC+CAEGRAE L HG  +AVV +KILRVS  ++++AVR+L      +VG F    
Sbjct: 299 VVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVLL-----SVGRFCATP 358

Query: 61  GVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEIL 92
            +  EM+++G V KLCL+LQ+    KT E+ KE+L
Sbjct: 359 ALLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELL 388

[Close]
BLAST of Carg17830 vs. TAIR10
Match: AT3G11840.1 (plant U-box 24)

HSP 1 Score: 80.9 bits (198), Expect = 5.3e-16
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 0 

Query: 3   MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEM 62
           + +LC CA GRAE+L H GG+AVV +++LRVS  ++++A+ IL  V K +  N  V EEM
Sbjct: 352 LSRLCCCANGRAEILAHRGGIAVVTKRLLRVSPAADDRAISILTTVSKFSPENM-VVEEM 411

Query: 63  VEVGAVGKLCLMLQIGGSLKTNERIKEIL--HFLRW 97
           V VG V KLC +L +   L   E+ KEIL  HF  W
Sbjct: 412 VNVGTVEKLCSVLGMDCGLNLKEKAKEILKDHFDEW 446

[Close]
BLAST of Carg17830 vs. TAIR10
Match: AT1G66160.1 (CYS, MET, PRO, and GLY protein 1)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 29/92 (31.52%), Postives = 55/92 (59.78%), Query Frame = 0 

Query: 3   MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEM 62
           ++ +CE  EGR ++ R+   + ++ +KIL++S    +  V +++ VCK+  G+    EE 
Sbjct: 317 LNVICETKEGREKVRRNKLVIPILVKKILKIS--EKKDLVSVMWKVCKS--GDGSEVEEA 376

Query: 63  VEVGAVGKLCLMLQIGGSLKTNERIKEILHFL 95
           + +GA  KL +MLQ+G    T E++ E+L  +
Sbjct: 377 LRLGAFKKLVVMLQVGCGEGTKEKVTELLKMM 404

[Close]
BLAST of Carg17830 vs. TAIR10
Match: AT3G02840.1 (ARM repeat superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.5e-07
Identity = 30/97 (30.93%), Postives = 58/97 (59.79%), Query Frame = 0 

Query: 1   MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVG---NFG 60
           + ++  C+  +G+ ++LR+   + ++ +KILRVS+ + + +V IL+ + KN      +  
Sbjct: 257 VVLNATCDNEQGKEDVLRNALIVPLLVKKILRVSDLATQCSVSILWKLWKNKKDGECDDR 316

Query: 61  VAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFL 95
           +  E ++VGA  KL ++LQ+G   KT E+  E+L  L
Sbjct: 317 LLVEALQVGAFEKLLVLLQVGCEDKTKEKASELLRNL 353

[Close]
BLAST of Carg17830 vs. Swiss-Prot
Match: sp|Q9SVC6|PUB22_ARATH (E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.1e-18
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 1   MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNF---- 60
           + +D LC+CAEGRAE L HG  +AVV++KILRVS  ++E+AVR+L      +VG F    
Sbjct: 323 VVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVSQITSERAVRVLL-----SVGRFCATP 382

Query: 61  GVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEI--LHFLRWYE 99
            + +EM+++G V KLCL+LQ+    KT E+ KE+  LH   W E
Sbjct: 383 SLLQEMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKLHARVWRE 421

[Close]
BLAST of Carg17830 vs. Swiss-Prot
Match: sp|Q84TG3|PUB23_ARATH (E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-16
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 0 

Query: 1   MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNF---- 60
           + +D LC+CAEGRAE L HG  +AVV +KILRVS  ++++AVR+L      +VG F    
Sbjct: 299 VVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVLL-----SVGRFCATP 358

Query: 61  GVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEIL 92
            +  EM+++G V KLCL+LQ+    KT E+ KE+L
Sbjct: 359 ALLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELL 388

[Close]
BLAST of Carg17830 vs. Swiss-Prot
Match: sp|Q9SF15|PUB24_ARATH (E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.6e-15
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 0 

Query: 3   MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEM 62
           + +LC CA GRAE+L H GG+AVV +++LRVS  ++++A+ IL  V K +  N  V EEM
Sbjct: 338 LSRLCCCANGRAEILAHRGGIAVVTKRLLRVSPAADDRAISILTTVSKFSPENM-VVEEM 397

Query: 63  VEVGAVGKLCLMLQIGGSLKTNERIKEIL--HFLRW 97
           V VG V KLC +L +   L   E+ KEIL  HF  W
Sbjct: 398 VNVGTVEKLCSVLGMDCGLNLKEKAKEILKDHFDEW 432

[Close]
BLAST of Carg17830 vs. Swiss-Prot
Match: sp|Q9C8D1|PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=PUB20 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-06
Identity = 29/92 (31.52%), Postives = 55/92 (59.78%), Query Frame = 0 

Query: 3   MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEM 62
           ++ +CE  EGR ++ R+   + ++ +KIL++S    +  V +++ VCK+  G+    EE 
Sbjct: 317 LNVICETKEGREKVRRNKLVIPILVKKILKIS--EKKDLVSVMWKVCKS--GDGSEVEEA 376

Query: 63  VEVGAVGKLCLMLQIGGSLKTNERIKEILHFL 95
           + +GA  KL +MLQ+G    T E++ E+L  +
Sbjct: 377 LRLGAFKKLVVMLQVGCGEGTKEKVTELLKMM 404

[Close]
BLAST of Carg17830 vs. Swiss-Prot
Match: sp|Q5PNY6|PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.2e-06
Identity = 27/92 (29.35%), Postives = 51/92 (55.43%), Query Frame = 0 

Query: 3   MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEM 62
           +D +CE   GR E+ ++   M ++ +KI +VS  +   ++ ++  + K   GN    E+ 
Sbjct: 322 LDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLWK--TGNTVAVEDA 381

Query: 63  VEVGAVGKLCLMLQIGGSLKTNERIKEILHFL 95
           V +GA  K+ L+LQ+G   +T E+  E+L  +
Sbjct: 382 VRLGAFQKVLLVLQVGYGEETKEKATELLKMM 411

[Close]
BLAST of Carg17830 vs. TrEMBL
Match: tr|A0A1S3BNV9|A0A1S3BNV9_CUCME (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103491935 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-36
Identity = 77/93 (82.80%), Postives = 85/93 (91.40%), Query Frame = 0 

Query: 3   MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEM 62
           +D+LCECAEGRAELL+HGGGMAVV RKILRVSN  NEKAVRILY+VCKNNVGN GVAEEM
Sbjct: 294 LDRLCECAEGRAELLQHGGGMAVVGRKILRVSNLGNEKAVRILYNVCKNNVGNCGVAEEM 353

Query: 63  VEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR 96
           VEVG V KLCLMLQ+GG+LKT ER+KEILH L+
Sbjct: 354 VEVGVVAKLCLMLQVGGNLKTRERVKEILHLLQ 386

[Close]
BLAST of Carg17830 vs. TrEMBL
Match: tr|I1M491|I1M491_SOYBN (RING-type E3 ubiquitin transferase OS=Glycine max OX=3847 GN=GLYMA_13G312700 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.1e-21
Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 0 

Query: 1   MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAE 60
           +A+DQLC CAEGRAELL HG G+A+V++KILRVS+ ++++ VRIL  +C+ +  N  V  
Sbjct: 292 IALDQLCGCAEGRAELLNHGAGVAIVSKKILRVSHVASDRGVRILASICRYS-ANARVLH 351

Query: 61  EMVEVGAVGKLCLMLQIGGSLKTNERIKEI--LHFLRW 97
           EM++VGAV KLCL+LQ+  SLKT ER KEI  LH + W
Sbjct: 352 EMLQVGAVSKLCLVLQVNCSLKTKERAKEILQLHSVVW 388

[Close]
BLAST of Carg17830 vs. TrEMBL
Match: tr|A0A2P5FUC6|A0A2P5FUC6_9ROSA (RING-type E3 ubiquitin transferase OS=Trema orientalis OX=63057 GN=TorRG33x02_026920 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 55/91 (60.44%), Postives = 71/91 (78.02%), Query Frame = 0 

Query: 1   MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAE 60
           + +DQLC CAEGRAELLRHG G+AVV++KILRVS+  + +AVRIL  VC+ +  +  V +
Sbjct: 299 VVLDQLCSCAEGRAELLRHGAGLAVVSKKILRVSHVGSYRAVRILSSVCRFSATS-RVLQ 358

Query: 61  EMVEVGAVGKLCLMLQIGGSLKTNERIKEIL 92
           EM++VG V KLCL+LQ+  SLKT ER KEIL
Sbjct: 359 EMLQVGVVAKLCLVLQVDSSLKTKERAKEIL 388

[Close]
BLAST of Carg17830 vs. TrEMBL
Match: tr|A0A0B2Q8L7|A0A0B2Q8L7_GLYSO (RING-type E3 ubiquitin transferase OS=Glycine soja OX=3848 GN=glysoja_035067 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 0 

Query: 1   MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAE 60
           +A+DQLC CAEGRAELL HG G+A+V++KILRVS+ ++E+ VRIL  +C+ +  N  V  
Sbjct: 292 IALDQLCGCAEGRAELLNHGAGVAIVSKKILRVSHVASERGVRILASICRYS-ANARVLH 351

Query: 61  EMVEVGAVGKLCLMLQIGGSLKTNERIKEI--LHFLRW 97
           EM++VGAV KLCL+LQ+    KT ER KE+  LH + W
Sbjct: 352 EMLQVGAVSKLCLVLQVNCGFKTKERAKEVLKLHSVVW 388

[Close]
BLAST of Carg17830 vs. TrEMBL
Match: tr|A0A2P5BQ49|A0A2P5BQ49_PARAD (RING-type E3 ubiquitin transferase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_220350 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.7e-20
Identity = 55/91 (60.44%), Postives = 71/91 (78.02%), Query Frame = 0 

Query: 1   MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAE 60
           + +DQLC CAEGRAELLRHG G+AVV++KILRVS+  + +AVRIL  VC+ +  +  V +
Sbjct: 299 VVLDQLCCCAEGRAELLRHGAGLAVVSKKILRVSHVVSYRAVRILSSVCRFSATS-RVLQ 358

Query: 61  EMVEVGAVGKLCLMLQIGGSLKTNERIKEIL 92
           EM++VG V KLCL+LQ+  SLKT ER KEIL
Sbjct: 359 EMLQVGVVAKLCLVLQVDSSLKTKERAKEIL 388

The following BLAST results are available for this feature:
BLAST of Carg17830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961129.11.5e-45100.00E3 ubiquitin-protein ligase PUB23-like [Cucurbita moschata][more]
XP_023516896.11.5e-45100.00E3 ubiquitin-protein ligase PUB22-like [Cucurbita pepo subsp. pepo][more]
XP_022987530.15.9e-4598.95E3 ubiquitin-protein ligase PUB23-like [Cucurbita maxima][more]
XP_008450285.12.9e-3682.80PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Cucumis melo][more]
XP_023520665.11.4e-3377.42E3 ubiquitin-protein ligase PUB22-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg17830 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52450.14.0e-1947.12plant U-box 22[more]
AT2G35930.11.3e-1747.37plant U-box 23[more]
AT3G11840.15.3e-1647.92plant U-box 24[more]
AT1G66160.11.2e-0731.52CYS, MET, PRO, and GLY protein 1[more]
AT3G02840.13.5e-0730.93ARM repeat superfamily protein[more]
BLAST of Carg17830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SVC6|PUB22_ARATH7.1e-1847.12E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 ... [more]
sp|Q84TG3|PUB23_ARATH2.3e-1647.37E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 ... [more]
sp|Q9SF15|PUB24_ARATH9.6e-1547.92E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 ... [more]
sp|Q9C8D1|PUB20_ARATH2.2e-0631.52U-box domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=PUB20 PE=2... [more]
sp|Q5PNY6|PUB21_ARATH8.2e-0629.35U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2... [more]
BLAST of Carg17830 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BNV9|A0A1S3BNV9_CUCME1.9e-3682.80RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103491935 PE=4 ... [more]
tr|I1M491|I1M491_SOYBN5.1e-2157.14RING-type E3 ubiquitin transferase OS=Glycine max OX=3847 GN=GLYMA_13G312700 PE=... [more]
tr|A0A2P5FUC6|A0A2P5FUC6_9ROSA1.1e-2060.44RING-type E3 ubiquitin transferase OS=Trema orientalis OX=63057 GN=TorRG33x02_02... [more]
tr|A0A0B2Q8L7|A0A0B2Q8L7_GLYSO2.5e-2055.10RING-type E3 ubiquitin transferase OS=Glycine soja OX=3848 GN=glysoja_035067 PE=... [more]
tr|A0A2P5BQ49|A0A2P5BQ49_PARAD5.7e-2060.44RING-type E3 ubiquitin transferase OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17830-RACarg17830-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22849:SF11SUBFAMILY NOT NAMEDcoord: 2..93
NoneNo IPR availablePANTHERPTHR22849WDSAM1 PROTEINcoord: 2..93