Carg17781 (gene) Silver-seed gourd

Overview
NameCarg17781
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_082 : 566837 .. 569826 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTTTCCAGAATCACGTTTGCCAATCAAAGCCTCTGGAAATCGGTCAATTTCACTAATTCTGTTGCTTTTATTTCGGTTATCTTCGGTGAAAATCTCTCTTCTGTTGTTGTTTCTAAATCTTACAGACCAATTTGTTCAGAAGCGATCAATGTTCTTCCTTCTCATGACGAATCTCATATCAGTAATAACTTCATTTCCCTCTTTAGCCAACGAAAATTTTCCCCTGATGATCCCGAGCTGAAAATCTTAGCTCCAAGGCTCAACACCCAGATTGTTGAAAATGTATTGAATGGGCTGAGGAATTGGAAGGTTGCTCATATGTTCTTCATTTGGGCTTCGAAACAACATGGTTACAGGAATAATTGCTATACTTTCAATGTCATTGCATCAATCCTATCACATGCTCGACAAAATGCCCCACTGAGAGCCATTGCTACGGATGTTCTTAACTCACGTTGTTCGATGACCCCTGGCGCTTTGGGAATCTTTTTAAGATGTTTGGGAAGCGTGGGGTTGGTTGAGGAAGCTAACTTTTTGTTTGATCAGGTCAGAGTTATGGGTCTCTGTGTTCCAAATAGTTATACTTATAACTGTTTGTTAGAGATTTTGTCTAAAGCAAATGCTATTGATTCCATTGAGAACAGGCTAAGGGAGATGAAATATTATGGGTGCGAAGTGGATAAGTACACATTGACACCAGTTTTGAGGGCTTACTGCAATGCTGGTAAGTTTGACAAAGCTTTAAATGTGTATAATGATATTCATGAGAGAGGGTGGATTGATGGGTATGTCTTTTCTATCTTAGTATTAGCTTTTAGCAAATGGGGTGAGGTAGATAGAGCAATGGAATTAATAGAAAGAACAGGAGATCAAAATCCTTGGTTGACTGAAAAGACATTCTATGCATTAATTCATGGTTTTGTGAAGGAATCCAGAGAAGATATGGCTATTAAGTTGCTTGAGAAAATGAAGAAACTGGGTTTTCCTCCTGATATTTCAATCTATGATGTGCTAATTGGAGGACTTTGTAAGAAGGGATCATTTGAGAAAGCAATGACTTTGTTTTGGAAGATGAAGTTGCTAGGAATTATGCCTGACATCGAGATACTCGCAAAGCTGATTGCATCTTCTTCTGAAGAAAGAGCTATGATCATGTTACTTGAGGAAAGACCAAAAGATGTGAATGATGAAGGTATGATCTTGCTTTACAATTCTGTGTTGACTTATTTTGTTAATGTTGGCTCATTAGATAAAGCTTGTTATTTGCTTGGGGTTACGGTGGAAAGCGAGTCTCATTCTGATGATATTCACATTTGTGAGCTCCACCAAACTTTTAAGAGTGTAGTTCCTAATACTGCTTCGTTCGGTATCGTAATCGATGGCTTGCTAAAGATGGGTAAGTTGGATGTAGCATTAAGCATGTTTGAAGATATGATTCAACTTGGTTGTAAACGAAACCAATTGCTTTATAACAATTTGATTGATGCACTGTGCAAATCAGACAAATTAGAGGAAAGCTATAAGATTTTAAGAGACATGAAGCAATCAGGACTTCAACCTACACATTTTACTCATAATTCAATATTTGGGTGCCTGTGTAGAAGAGAGGATATTGTGGGAGCTACTGAATTACTGAGGGAGATGCATGGTCACGGACACGAGCCATGGATAAAACATTCTACTTTTCTTGTGAAACAACTGTGCAAAAATGGGCGAGTTAATGAAGCTTGTAATTTTCTTGGAAATATGGTTCGTGAAGGCTTCCTACCTGATATAGTTGCCTACTCTGCTGCCATGGATGGGCTAGTCAAGATTCATGAAGTGGATCGCGCTTTCGAGATGTTCCAAGACATTTGTACTCATGGTTATCAACCCGACGTGGTTGCTTATAACGTATTGATAAACGGGCTCTGTAAATCCGGGAGAGTTAACGAAGCTGAGGATTTTCTGAACAAAATGATAGTGGCAGGGCTTGTTCCTACGGTTGTCACCTATAATCTTCTCATTGATGGATGGTGCAAAAGTGGAGATATTGATCAGGCCATCCGTTGTCTTTCCAGAATGAATGGAGAGAACAGGGAACCAACCATCATCACTTACACGACTTTGATTGATGGATGCTGCAATTCTGGAAGGCCCGATGATGCCGAAATACTTTGGAATGAAATGCAACAAAAAGGGTGCTTCCCGAACAGGATAGCTTACATGGCTATCGTGCATGGTCTTTGTAAGTGCGGAAGGCCCGATGAAGCTCTAGTTTATTACCACAGGATGGAAGAAAAGGAAATGAAACCAGACAGTTATGTGTCTGTTGCATTGATCGATGCTCTCGTGTCGAAGCAAAACTTTCCTATGGCTCTTAACATACTAGAGAAGATGGTTGAGACAGGAAAAGTTCCCGATCCAGCTGATAAGAACTATGTAACTATAAGAGATGCAATATTTAAATTGTCTGAAGATGAACGAACTGGCTCGGGAGTTAGATCTCTCATCGAAAAGGGCAGCATTCCGACTATTAGCATTTCAGATCTCAAGAGCTGAAGTTGAAGCCTTTTTTGTTACCTTATCAAAGGGAAATTAGATAGATCTTTTGGTAGCAAAACAAAGGGAAATGTTGGTACGTTTGCAAACCGAGCAGCTGGTTTGAGACTTCTATCTTGACTCCGAGTATCGATTTTCCGAACTCCAGGTACCTTCATTTGATAGTAGACATCACATGTTCTGTCATCCTTAAAATAGTTGGATTCATTTAGAACTAAGGTTATTTTCTCTTTTTTTGATAACAAAGTTGTGTGCTTCTTTCTAAATAATATAGTGATTTAGGCTGAAGAGCTGCAAGTTTTCACAATCCTTTATAACTCATAAAATTTGTAGAATCAGAAGATAGCAATATGAACATAAGAGAGAAAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCTCTAGCAGATGCGTTTTAAAATATGGAGAGGAAGCACGGA

mRNA sequence

ATGGCGCTTTCCAGAATCACGTTTGCCAATCAAAGCCTCTGGAAATCGGTCAATTTCACTAATTCTGTTGCTTTTATTTCGGTTATCTTCGGTGAAAATCTCTCTTCTGTTGTTGTTTCTAAATCTTACAGACCAATTTGTTCAGAAGCGATCAATGTTCTTCCTTCTCATGACGAATCTCATATCAGTAATAACTTCATTTCCCTCTTTAGCCAACGAAAATTTTCCCCTGATGATCCCGAGCTGAAAATCTTAGCTCCAAGGCTCAACACCCAGATTGTTGAAAATGTATTGAATGGGCTGAGGAATTGGAAGGTTGCTCATATGTTCTTCATTTGGGCTTCGAAACAACATGGTTACAGGAATAATTGCTATACTTTCAATGTCATTGCATCAATCCTATCACATGCTCGACAAAATGCCCCACTGAGAGCCATTGCTACGGATGTTCTTAACTCACGTTGTTCGATGACCCCTGGCGCTTTGGGAATCTTTTTAAGATGTTTGGGAAGCGTGGGGTTGGTTGAGGAAGCTAACTTTTTGTTTGATCAGGAATCCAGAGAAGATATGGCTATTAAGTTGCTTGAGAAAATGAAGAAACTGGGTTTTCCTCCTGATATTTCAATCTATGATGTGCTAATTGGAGGACTTTGTAAGAAGGGATCATTTGAGAAAGCAATGACTTTGTTTTGGAAGATGAAGTTGCTAGGAATTATGCCTGACATCGAGATACTCGCAAAGCTGATTGCATCTTCTTCTGAAGAAAGAGCTATGATCATGTTACTTGAGGAAAGACCAAAAGATGTGAATGATGAAGGTATGATCTTGCTTTACAATTCTGTGTTGACTTATTTTGTTAATGTTGGCTCATTAGATAAAGCTTGTTATTTGCTTGGGGTTACGGTGGAAAGCGAGTCTCATTCTGATGATATTCACATTTGTGAGCTCCACCAAACTTTTAAGAGTGTAGTTCCTAATACTGCTTCGTTCGGTATCGTAATCGATGGCTTGCTAAAGATGGGTAAGTTGGATGTAGCATTAAGCATGTTTGAAGATATGATTCAACTTGGTTGTAAACGAAACCAATTGCTTTATAACAATTTGATTGATGCACTGTGCAAATCAGACAAATTAGAGGAAAGCTATAAGATTTTAAGAGACATGAAGCAATCAGGACTTCAACCTACACATTTTACTCATAATTCAATATTTGGGTGCCTGTGTAGAAGAGAGGATATTGTGGGAGCTACTGAATTACTGAGGGAGATGCATGGTCACGGACACGAGCCATGGATAAAACATTCTACTTTTCTTGTGAAACAACTGTGCAAAAATGGGCGAGTTAATGAAGCTTGTAATTTTCTTGGAAATATGGTTCGTGAAGGCTTCCTACCTGATATAGTTGCCTACTCTGCTGCCATGGATGGGCTAGTCAAGATTCATGAAGTGGATCGCGCTTTCGAGATGTTCCAAGACATTTGTACTCATGGTTATCAACCCGACGTGGTTGCTTATAACGTATTGATAAACGGGCTCTGTAAATCCGGGAGAGTTAACGAAGCTGAGGATTTTCTGAACAAAATGATAGTGGCAGGGCTTGTTCCTACGGTTGTCACCTATAATCTTCTCATTGATGGATGGTGCAAAAGTGGAGATATTGATCAGGCCATCCGTTGTCTTTCCAGAATGAATGGAGAGAACAGGGAACCAACCATCATCACTTACACGACTTTGATTGATGGATGCTGCAATTCTGGAAGGCCCGATGATGCCGAAATACTTTGGAATGAAATGCAACAAAAAGGGTGCTTCCCGAACAGGATAGCTTACATGGCTATCGTGCATGGTCTTTGTAAGTGCGGAAGGCCCGATGAAGCTCTAGTTTATTACCACAGGATGGAAGAAAAGGAAATGAAACCAGACAGTTATGTGTCTGTTGCATTGATCGATGCTCTCGTGTCGAAGCAAAACTTTCCTATGGCTCTTAACATACTAGAGAAGATGGTTGAGACAGGAAAAGTTCCCGATCCAGCTGATAAGAACTATGTAACTATAAGAGATGCAATATTTAAATTGTCTGAAGATGAACGAACTGGCTCGGGAGTTAGATCTCTCATCGAAAAGGGCAGCATTCCGACTATTAGCATTTCAGATCTCAAGAGCTGAAGTTGAAGCCTTTTTTGTTACCTTATCAAAGGGAAATTAGATAGATCTTTTGGTAGCAAAACAAAGGGAAATGTTGGTACGTTTGCAAACCGAGCAGCTGGTTTGAGACTTCTATCTTGACTCCGAGTATCGATTTTCCGAACTCCAGGTACCTTCATTTGATAGTAGACATCACATGTTCTGTCATCCTTAAAATAGTTGGATTCATTTAGAACTAAGGTTATTTTCTCTTTTTTTGATAACAAAGTTGTGTGCTTCTTTCTAAATAATATAGTGATTTAGGCTGAAGAGCTGCAAGTTTTCACAATCCTTTATAACTCATAAAATTTGTAGAATCAGAAGATAGCAATATGAACATAAGAGAGAAAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCTCTAGCAGATGCGTTTTAAAATATGGAGAGGAAGCACGGA

Coding sequence (CDS)

ATGGCGCTTTCCAGAATCACGTTTGCCAATCAAAGCCTCTGGAAATCGGTCAATTTCACTAATTCTGTTGCTTTTATTTCGGTTATCTTCGGTGAAAATCTCTCTTCTGTTGTTGTTTCTAAATCTTACAGACCAATTTGTTCAGAAGCGATCAATGTTCTTCCTTCTCATGACGAATCTCATATCAGTAATAACTTCATTTCCCTCTTTAGCCAACGAAAATTTTCCCCTGATGATCCCGAGCTGAAAATCTTAGCTCCAAGGCTCAACACCCAGATTGTTGAAAATGTATTGAATGGGCTGAGGAATTGGAAGGTTGCTCATATGTTCTTCATTTGGGCTTCGAAACAACATGGTTACAGGAATAATTGCTATACTTTCAATGTCATTGCATCAATCCTATCACATGCTCGACAAAATGCCCCACTGAGAGCCATTGCTACGGATGTTCTTAACTCACGTTGTTCGATGACCCCTGGCGCTTTGGGAATCTTTTTAAGATGTTTGGGAAGCGTGGGGTTGGTTGAGGAAGCTAACTTTTTGTTTGATCAGGAATCCAGAGAAGATATGGCTATTAAGTTGCTTGAGAAAATGAAGAAACTGGGTTTTCCTCCTGATATTTCAATCTATGATGTGCTAATTGGAGGACTTTGTAAGAAGGGATCATTTGAGAAAGCAATGACTTTGTTTTGGAAGATGAAGTTGCTAGGAATTATGCCTGACATCGAGATACTCGCAAAGCTGATTGCATCTTCTTCTGAAGAAAGAGCTATGATCATGTTACTTGAGGAAAGACCAAAAGATGTGAATGATGAAGGTATGATCTTGCTTTACAATTCTGTGTTGACTTATTTTGTTAATGTTGGCTCATTAGATAAAGCTTGTTATTTGCTTGGGGTTACGGTGGAAAGCGAGTCTCATTCTGATGATATTCACATTTGTGAGCTCCACCAAACTTTTAAGAGTGTAGTTCCTAATACTGCTTCGTTCGGTATCGTAATCGATGGCTTGCTAAAGATGGGTAAGTTGGATGTAGCATTAAGCATGTTTGAAGATATGATTCAACTTGGTTGTAAACGAAACCAATTGCTTTATAACAATTTGATTGATGCACTGTGCAAATCAGACAAATTAGAGGAAAGCTATAAGATTTTAAGAGACATGAAGCAATCAGGACTTCAACCTACACATTTTACTCATAATTCAATATTTGGGTGCCTGTGTAGAAGAGAGGATATTGTGGGAGCTACTGAATTACTGAGGGAGATGCATGGTCACGGACACGAGCCATGGATAAAACATTCTACTTTTCTTGTGAAACAACTGTGCAAAAATGGGCGAGTTAATGAAGCTTGTAATTTTCTTGGAAATATGGTTCGTGAAGGCTTCCTACCTGATATAGTTGCCTACTCTGCTGCCATGGATGGGCTAGTCAAGATTCATGAAGTGGATCGCGCTTTCGAGATGTTCCAAGACATTTGTACTCATGGTTATCAACCCGACGTGGTTGCTTATAACGTATTGATAAACGGGCTCTGTAAATCCGGGAGAGTTAACGAAGCTGAGGATTTTCTGAACAAAATGATAGTGGCAGGGCTTGTTCCTACGGTTGTCACCTATAATCTTCTCATTGATGGATGGTGCAAAAGTGGAGATATTGATCAGGCCATCCGTTGTCTTTCCAGAATGAATGGAGAGAACAGGGAACCAACCATCATCACTTACACGACTTTGATTGATGGATGCTGCAATTCTGGAAGGCCCGATGATGCCGAAATACTTTGGAATGAAATGCAACAAAAAGGGTGCTTCCCGAACAGGATAGCTTACATGGCTATCGTGCATGGTCTTTGTAAGTGCGGAAGGCCCGATGAAGCTCTAGTTTATTACCACAGGATGGAAGAAAAGGAAATGAAACCAGACAGTTATGTGTCTGTTGCATTGATCGATGCTCTCGTGTCGAAGCAAAACTTTCCTATGGCTCTTAACATACTAGAGAAGATGGTTGAGACAGGAAAAGTTCCCGATCCAGCTGATAAGAACTATGTAACTATAAGAGATGCAATATTTAAATTGTCTGAAGATGAACGAACTGGCTCGGGAGTTAGATCTCTCATCGAAAAGGGCAGCATTCCGACTATTAGCATTTCAGATCTCAAGAGCTGA

Protein sequence

MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDESHISNNFISLFSQRKFSPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGYRNNCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGALGIFLRCLGSVGLVEEANFLFDQESREDMAIKLLEKMKKLGFPPDISIYDVLIGGLCKKGSFEKAMTLFWKMKLLGIMPDIEILAKLIASSSEERAMIMLLEERPKDVNDEGMILLYNSVLTYFVNVGSLDKACYLLGVTVESESHSDDIHICELHQTFKSVVPNTASFGIVIDGLLKMGKLDVALSMFEDMIQLGCKRNQLLYNNLIDALCKSDKLEESYKILRDMKQSGLQPTHFTHNSIFGCLCRREDIVGATELLREMHGHGHEPWIKHSTFLVKQLCKNGRVNEACNFLGNMVREGFLPDIVAYSAAMDGLVKIHEVDRAFEMFQDICTHGYQPDVVAYNVLINGLCKSGRVNEAEDFLNKMIVAGLVPTVVTYNLLIDGWCKSGDIDQAIRCLSRMNGENREPTIITYTTLIDGCCNSGRPDDAEILWNEMQQKGCFPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVALIDALVSKQNFPMALNILEKMVETGKVPDPADKNYVTIRDAIFKLSEDERTGSGVRSLIEKGSIPTISISDLKS
Homology
[Close]
BLAST of Carg17781 vs. NCBI nr
Match: XP_022964306.1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial isoform X1 [Cucurbita moschata])

HSP 1 Score: 526.6 bits (1355), Expect = 1.4e-145
Identity = 329/490 (67.14%), Postives = 335/490 (68.37%), Query Frame = 0 

Query: 1   MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES 60
           MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES
Sbjct: 1   MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES 60

Query: 61  HISNNFISLFSQRKFSPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGY 120
           HISNNFISLFSQ KFSPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGY
Sbjct: 61  HISNNFISLFSQLKFSPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGY 120

Query: 121 RNNCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGALGIFLRCLGSVGLVEEANF 180
           R+NCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGALGIFLRCLGSVGLVEEANF
Sbjct: 121 RHNCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGALGIFLRCLGSVGLVEEANF 180

Query: 181 LFDQ-----------------------ESREDMAIKLLEKMKKLGFPPDISIYDVLIGGL 240
           LFDQ                        +  D     L +MK  G   D      ++   
Sbjct: 181 LFDQVRVMGLCVPNSYTYNCLLEILSKANAIDSIENRLREMKYYGCEVDKYTLTPVLRAY 240

Query: 241 CKKGSFE----------------------------------------------------- 300
           C  G F+                                                     
Sbjct: 241 CNAGKFDKALNVYNDIHERGWIDGYVFSILVLAFSKWGEVDRAMELIERTGDQXXXXXXX 300

Query: 301 ---------------------------------------------------XXXXXXXXX 360
                                                              XXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXSSSEERAMIMLLEERPKDVNDEGMILLYNSVLTYFVNVGSLDK 364
           XXXXXXXXXXXXXXXXX SSEERAMIMLLEERPKDVNDEGMILLYNSVLTYFVNVGSLDK
Sbjct: 361 XXXXXXXXXXXXXXXXXXSSEERAMIMLLEERPKDVNDEGMILLYNSVLTYFVNVGSLDK 420

[Close]
BLAST of Carg17781 vs. NCBI nr
Match: XP_022990708.1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial isoform X1 [Cucurbita maxima])

HSP 1 Score: 501.9 bits (1291), Expect = 3.6e-138
Identity = 317/490 (64.69%), Postives = 329/490 (67.14%), Query Frame = 0 

Query: 1   MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES 60
           MALSRITFANQSLWKSVNFTNSVAFISV F E+LS VVVS+SYRPICS+AINV+PSHDES
Sbjct: 1   MALSRITFANQSLWKSVNFTNSVAFISV-FSESLSPVVVSQSYRPICSDAINVIPSHDES 60

Query: 61  HISNNFISLFSQRKFSPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGY 120
           HISNNFISLFSQRK SPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGY
Sbjct: 61  HISNNFISLFSQRKISPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGY 120

Query: 121 RNNCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGALGIFLRCLGSVGLVEEANF 180
           R+NCYTFNVIASILSHARQNAPLRAIA DV+NSRCSMTPGALGIFLRCLGSVGLVEEANF
Sbjct: 121 RHNCYTFNVIASILSHARQNAPLRAIAMDVINSRCSMTPGALGIFLRCLGSVGLVEEANF 180

Query: 181 LFDQ-----------------------ESREDMAIKLLEKMKKLGFPPDISIYDVLIGGL 240
           LFDQ                        +  D     L +MK  G   D      ++   
Sbjct: 181 LFDQVRVMGLCVPNSYTYNCLLEILSKANAIDSIENRLREMKYYGCEVDKYTLTPVLKAY 240

Query: 241 CKKGSFE----------------------------------------------------- 300
           C  G F+                                                     
Sbjct: 241 CNTGKFDKALNVYNDIHERGWIDGYVFSILVLAFSKWGEVDRAMELIERTGDQXXXXXXX 300

Query: 301 ---------------------------------------------------XXXXXXXXX 360
                                                              XXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXSSSEERAMIMLLEERPKDVNDEGMILLYNSVLTYFVNVGSLDK 364
           XXXXXXXXXXXXXXXXX SSEERAMIMLLEERPKDVNDEGMILLYNSVLT FVN GSLDK
Sbjct: 361 XXXXXXXXXXXXXXXXXXSSEERAMIMLLEERPKDVNDEGMILLYNSVLTCFVNAGSLDK 420

[Close]
BLAST of Carg17781 vs. NCBI nr
Match: XP_022964314.1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial isoform X2 [Cucurbita moschata])

HSP 1 Score: 491.1 bits (1263), Expect = 6.4e-135
Identity = 312/484 (64.46%), Postives = 321/484 (66.32%), Query Frame = 0 

Query: 1   MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES 60
           MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES
Sbjct: 1   MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES 60

Query: 61  HISNNFISLFSQRKFSPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGY 120
           HISNNFISLFSQ KFSPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGY
Sbjct: 61  HISNNFISLFSQLKFSPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGY 120

Query: 121 RNNCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGALGIFLRCLGSVGLVEEANF 180
           R+NCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGALGIFLRCLGSVGLVEEANF
Sbjct: 121 RHNCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGALGIFLRCLGSVGLVEEANF 180

Query: 181 LFDQ-----------------------ESREDMAIKLLEKMKKLGFPPDISIYDVLIGGL 240
           LFDQ                        +  D     L +MK  G   D      ++   
Sbjct: 181 LFDQVRVMGLCVPNSYTYNCLLEILSKANAIDSIENRLREMKYYGCEVDKYTLTPVLRAY 240

Query: 241 CKKGSFE----------------------------------------------------- 300
           C  G F+                                                     
Sbjct: 241 CNAGKFDKALNVYNDIHERGWIDGYVFSILVLAFSKWGEVDRAMELIERTGDQXXXXXXX 300

Query: 301 ---------------------------------------------------XXXXXXXXX 358
                                                              XXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

[Close]
BLAST of Carg17781 vs. NCBI nr
Match: XP_022990709.1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial isoform X2 [Cucurbita maxima])

HSP 1 Score: 466.8 bits (1200), Expect = 1.3e-127
Identity = 300/484 (61.98%), Postives = 315/484 (65.08%), Query Frame = 0 

Query: 1   MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES 60
           MALSRITFANQSLWKSVNFTNSVAFISV F E+LS VVVS+SYRPICS+AINV+PSHDES
Sbjct: 1   MALSRITFANQSLWKSVNFTNSVAFISV-FSESLSPVVVSQSYRPICSDAINVIPSHDES 60

Query: 61  HISNNFISLFSQRKFSPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGY 120
           HISNNFISLFSQRK SPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGY
Sbjct: 61  HISNNFISLFSQRKISPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGY 120

Query: 121 RNNCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGALGIFLRCLGSVGLVEEANF 180
           R+NCYTFNVIASILSHARQNAPLRAIA DV+NSRCSMTPGALGIFLRCLGSVGLVEEANF
Sbjct: 121 RHNCYTFNVIASILSHARQNAPLRAIAMDVINSRCSMTPGALGIFLRCLGSVGLVEEANF 180

Query: 181 LFDQ-----------------------ESREDMAIKLLEKMKKLGFPPDISIYDVLIGGL 240
           LFDQ                        +  D     L +MK  G   D      ++   
Sbjct: 181 LFDQVRVMGLCVPNSYTYNCLLEILSKANAIDSIENRLREMKYYGCEVDKYTLTPVLKAY 240

Query: 241 CKKGSFE----------------------------------------------------- 300
           C  G F+                                                     
Sbjct: 241 CNTGKFDKALNVYNDIHERGWIDGYVFSILVLAFSKWGEVDRAMELIERTGDQXXXXXXX 300

Query: 301 ---------------------------------------------------XXXXXXXXX 358
                                                              XXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

[Close]
BLAST of Carg17781 vs. NCBI nr
Match: XP_023554296.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457.6 bits (1176), Expect = 7.8e-125
Identity = 291/457 (63.68%), Postives = 301/457 (65.86%), Query Frame = 0 

Query: 34  LSSVVVSKSYRPICSEAINVLPSHDESHISNNFISLFSQRKFSPDDPELKILAPRLNTQI 93
           +S VVVS+SYRPICS+AINVLPSHDESHISNNFISLFSQRKFSPDDPELKILAPRLNTQI
Sbjct: 64  ISPVVVSQSYRPICSDAINVLPSHDESHISNNFISLFSQRKFSPDDPELKILAPRLNTQI 123

Query: 94  VENVLNGLRNWKVAHMFFIWASKQHGYRNNCYTFNVIASILSHARQNAPLRAIATDVLNS 153
           VENVLNGLRNWKVAHMFFIWASKQHGYR+NCYTFNVIASILSHARQNAPLRAIATDVLNS
Sbjct: 124 VENVLNGLRNWKVAHMFFIWASKQHGYRHNCYTFNVIASILSHARQNAPLRAIATDVLNS 183

Query: 154 RCSMTPGALGIFLRCLGSVGLVEEANFLFDQ-----------------------ESREDM 213
           RCSMTPGALGIFLRCLGSVGLVEEANFLFDQ                        +  D 
Sbjct: 184 RCSMTPGALGIFLRCLGSVGLVEEANFLFDQVRVMGLCVPNSYTYNCLLEILSKANAIDS 243

Query: 214 AIKLLEKMKKLGFPPDISIYDVLIGGLCKKGSFE-------------------------- 273
               L +MK  G   D      ++   C  G F+                          
Sbjct: 244 IENRLREMKYYGCEVDKYTLTPVLKAYCNAGKFDKALNVYNDIHERGWIDGYVFSILVLA 303

Query: 274 ------------------------------------------------------------ 333
                                                                       
Sbjct: 304 FSKWGEVDRAMELIERTGDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 363

Query: 334 ------------------XXXXXXXXXXXXXXXXXXXXXXXXXXSSSEERAMIMLLEERP 364
                             XXXXXXXXXXXXXXXXXXXXXXXXXX SSEERAMIMLLEERP
Sbjct: 364 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEERAMIMLLEERP 423

[Close]
BLAST of Carg17781 vs. TAIR10
Match: AT5G08310.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-42
Identity = 84/181 (46.41%), Postives = 121/181 (66.85%), Query Frame = 0 

Query: 43  YRPICSEAINVLPSH-DESHISNNFISLFSQRKFSPDDPELKILAPRLNTQIVENVLNGL 102
           +RP+ ++  N    H ++S ++ N I +F+++ FSPDDPEL IL+P LNT++VE VLNG 
Sbjct: 24  HRPLTTKLDNTRFLHPNQSKLAQNLIVIFTRQPFSPDDPELLILSPELNTKVVETVLNGF 83

Query: 103 RNWKVAHMFFIWASKQHGYRNNCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGA 162
           + W +A++FF WASKQ GYRN+ Y +N +ASILS ARQNA L+A+  DVLNSRC M+PGA
Sbjct: 84  KRWGLAYLFFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLNSRCFMSPGA 143

Query: 163 LGIFLRCLGSVGLVEEANFLFDQESREDMAIKLLEKMKKLGFPPDISIYDVLIGGLCKKG 222
            G F+RCLG+ GLV+EA+ +FD+     + +            P+   Y+ L+  + K  
Sbjct: 144 FGFFIRCLGNAGLVDEASSVFDRVREMGLCV------------PNAYTYNCLLEAISKSN 192

[Close]
BLAST of Carg17781 vs. TAIR10
Match: AT5G65820.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-07
Identity = 40/156 (25.64%), Postives = 72/156 (46.15%), Query Frame = 0 

Query: 73  RKFSPDDPELKIL----APRLNTQIVENVLNGLRN-WKVAHMFFIWASKQHGYRNNCYTF 132
           RKF    P+L++        L   ++E VLN   +   + + FF+WA+KQ  Y ++   +
Sbjct: 91  RKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVY 150

Query: 133 NVIASILSHARQNAPLRAIATDVLNSRCSM-TPGALGIFLRCLGSVGLVEEANFLFDQES 192
             +  ILS  RQ   +  +  ++      +  P    + ++   S  +V++         
Sbjct: 151 KSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKK--------- 210

Query: 193 REDMAIKLLEKMKKLGFPPDISIYDVLIGGLCKKGS 223
               AI++L++M K GF PD  ++  L+  LCK GS
Sbjct: 211 ----AIEVLDEMPKFGFEPDEYVFGCLLDALCKHGS 233

[Close]
BLAST of Carg17781 vs. TAIR10
Match: AT4G20740.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 44.7 bits (104), Expect = 2.9e-04
Identity = 37/140 (26.43%), Postives = 58/140 (41.43%), Query Frame = 0 

Query: 88  RLNTQIVENVLNGLRNWKVAHMFFIWASKQHGYRNNCYTFNVIASILSHARQNAPLRAIA 147
           R+   IV  VL    +  VA  FF WA KQ GY+++   +N  A  L+   +N   RA  
Sbjct: 122 RVTPSIVAEVLKLGNDAAVAAKFFHWAGKQKGYKHDFAAYNAFAYCLN---RNGHFRA-- 181

Query: 148 TDVLNSRCSMTPGALGIFLRCLGSVGLVEEANFLFDQESREDMAIK---LLEKMKKLGFP 207
                         L   +   G     ++   L    +     ++   + EKMKK GF 
Sbjct: 182 -----------ADQLPELMDSQGRPPSEKQFEILIRMHADNRRGLRVYYVYEKMKKFGFK 241

Query: 208 PDISIYDVLIGGLCKKGSFE 225
           P + +Y+ ++  L K G F+
Sbjct: 242 PRVFLYNRIMDALVKNGYFD 245

[Close]
BLAST of Carg17781 vs. Swiss-Prot
Match: sp|P0C8Q6|PP368_ARATH (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08310 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-41
Identity = 84/181 (46.41%), Postives = 121/181 (66.85%), Query Frame = 0 

Query: 43  YRPICSEAINVLPSH-DESHISNNFISLFSQRKFSPDDPELKILAPRLNTQIVENVLNGL 102
           +RP+ ++  N    H ++S ++ N I +F+++ FSPDDPEL IL+P LNT++VE VLNG 
Sbjct: 24  HRPLTTKLDNTRFLHPNQSKLAQNLIVIFTRQPFSPDDPELLILSPELNTKVVETVLNGF 83

Query: 103 RNWKVAHMFFIWASKQHGYRNNCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGA 162
           + W +A++FF WASKQ GYRN+ Y +N +ASILS ARQNA L+A+  DVLNSRC M+PGA
Sbjct: 84  KRWGLAYLFFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLNSRCFMSPGA 143

Query: 163 LGIFLRCLGSVGLVEEANFLFDQESREDMAIKLLEKMKKLGFPPDISIYDVLIGGLCKKG 222
            G F+RCLG+ GLV+EA+ +FD+     + +            P+   Y+ L+  + K  
Sbjct: 144 FGFFIRCLGNAGLVDEASSVFDRVREMGLCV------------PNAYTYNCLLEAISKSN 192

[Close]
BLAST of Carg17781 vs. Swiss-Prot
Match: sp|Q9FH87|PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana OX=3702 GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.8e-06
Identity = 40/156 (25.64%), Postives = 72/156 (46.15%), Query Frame = 0 

Query: 73  RKFSPDDPELKIL----APRLNTQIVENVLNGLRN-WKVAHMFFIWASKQHGYRNNCYTF 132
           RKF    P+L++        L   ++E VLN   +   + + FF+WA+KQ  Y ++   +
Sbjct: 91  RKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVY 150

Query: 133 NVIASILSHARQNAPLRAIATDVLNSRCSM-TPGALGIFLRCLGSVGLVEEANFLFDQES 192
             +  ILS  RQ   +  +  ++      +  P    + ++   S  +V++         
Sbjct: 151 KSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKK--------- 210

Query: 193 REDMAIKLLEKMKKLGFPPDISIYDVLIGGLCKKGS 223
               AI++L++M K GF PD  ++  L+  LCK GS
Sbjct: 211 ----AIEVLDEMPKFGFEPDEYVFGCLLDALCKHGS 233

[Close]
BLAST of Carg17781 vs. TrEMBL
Match: tr|A0A0A0KMI5|A0A0A0KMI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021350 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 3.1e-93
Identity = 221/493 (44.83%), Postives = 261/493 (52.94%), Query Frame = 0 

Query: 1   MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAINVLPSHDES 60
           MAL + T AN SL KS  FTNS A  S IF +NLS   VS+ YR IC+E INVLP  DE+
Sbjct: 1   MALFKTTLANPSLSKSGKFTNSFAVASRIFSKNLS--YVSQPYRSICTEVINVLPPLDET 60

Query: 61  HISNNFISLFSQRKFSPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQHGY 120
           +ISNNFISLFSQ+KFS DDP+LK LAP LN +IVE VLNGL +WK+AHMFF WASKQHGY
Sbjct: 61  YISNNFISLFSQQKFSLDDPQLKNLAPSLNPRIVETVLNGLGSWKIAHMFFTWASKQHGY 120

Query: 121 RNNCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGALGIFLRCLGSVGLVEEANF 180
           R+NC TFN IASILSHAR+NAPLRA+A DVLN RCSMTP ALG+FLRCLGSVGLVEEAN+
Sbjct: 121 RHNCNTFNAIASILSHARKNAPLRAVAMDVLNFRCSMTPRALGVFLRCLGSVGLVEEANY 180

Query: 181 LFDQESREDMAIK-------LLE----------------KMKKLGFPPDISIYDVLIGGL 240
           LFDQ    D+ I        LLE                +MK  G+  D      ++   
Sbjct: 181 LFDQVRSMDLCIPNNYSYNCLLEILSKTNSIDSIENRLMEMKDFGWEVDKYTLTPVLMAY 240

Query: 241 CKKGSFEXXXXXXXXXXXXXXXXXXXXXXXXXXSSS------------------------ 300
           C  G F+                           S                         
Sbjct: 241 CNAGKFDKALIVFNDMHERGWVDGYVFSILALAFSKWGEVDRTMQFIDRMEDQNLMXXXX 300

Query: 301 ------------------------------------------------------------ 360
                                                                       
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 --------------------EERAMIMLLEERPKDVNDEGMILLYNSVLTYFVNVGSLDK 364
                               EER +IMLL ERPKD+NDEGMI L+NSVL + VN G ++ 
Sbjct: 361 XXXXXXXXXXXXXXXXXXXPEERVVIMLLGERPKDINDEGMIFLFNSVLKFLVNAGKVES 420

[Close]
BLAST of Carg17781 vs. TrEMBL
Match: tr|A0A1S3BTR3|A0A1S3BTR3_CUCME (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493457 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.7e-83
Identity = 223/458 (48.69%), Postives = 261/458 (56.99%), Query Frame = 0 

Query: 36  SVVVSKSYRPICSEAINVLPSHDESHISNNFISLFSQRKFSPDDPELKILAPRLNTQIVE 95
           S +VS+ YR +C+E IN+LPS DE+ ISNNFISL SQ+KFS DDPELK LA  LN +IVE
Sbjct: 65  SPMVSQRYRSVCTEVINILPSPDETCISNNFISLLSQQKFSLDDPELKNLASSLNPRIVE 124

Query: 96  NVLNGLRNWKVAHMFFIWASKQHGYRNNCYTFNVIASILSHARQNAPLRAIATDVLNSRC 155
            VLNGLR W++AHMFF WASKQ GYR+NCYTFN IAS+LSHAR+ APLRA+A DVL SRC
Sbjct: 125 TVLNGLRRWEIAHMFFTWASKQQGYRHNCYTFNAIASVLSHARKKAPLRAVARDVLTSRC 184

Query: 156 SMTPGALGIFLRCLGSVGLVEEANFLFDQESREDMAIK-------LLE------------ 215
            MTPGALG+FLRCLGSVGLVEEAN+LFDQ     + +        LLE            
Sbjct: 185 LMTPGALGVFLRCLGSVGLVEEANYLFDQVRSMGLCVPNSYSYNCLLEILSKVNAIDSIE 244

Query: 216 ----KMKKLGFPPDISIYDVLIGGLCKKGSFE---------------------------- 275
               +MK  G+  D      ++   C  G F+                            
Sbjct: 245 NRLIEMKYFGWEVDKYTLTPVLKAYCNAGKFDKALIVFNDMHERGCVDGYVFSILALAFS 304

Query: 276 ------------------------------------------------------------ 335
                                                                       
Sbjct: 305 KWGEVDRAMQLIDRMGDQNLVLGEKTFYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 364

Query: 336 ----------------XXXXXXXXXXXXXXXXXXXXXXXXXXSSSEERAMIMLLEERPKD 364
                           XXXXXXXXXXXXXXXXXXXXXXXXXX S EER +IMLL ERP D
Sbjct: 365 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEERVVIMLLGERPID 424

[Close]
BLAST of Carg17781 vs. TrEMBL
Match: tr|M5VT04|M5VT04_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019788mg PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 9.3e-58
Identity = 169/497 (34.00%), Postives = 231/497 (46.48%), Query Frame = 0 

Query: 1   MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAIN--VLPSHD 60
           MAL RI+  + +LWKS    +  A +S++  +NL++   S + RPIC+       LPSH 
Sbjct: 1   MALPRISKTHLNLWKSTKPIDPNALLSLVLAKNLTA--SSNTPRPICTRTHTGPSLPSH- 60

Query: 61  ESHISNNFISLFSQRKFSPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQH 120
            + + N FIS+F+++ FSPD+PELK LA RL T++VE+VL+GL++WK+AH+FF WA  Q 
Sbjct: 61  LTGVINGFISIFTEQPFSPDNPELKNLASRLTTKVVESVLDGLKSWKIAHVFFTWAPTQS 120

Query: 121 GYRNNCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGALGIFLRCLGSVGLVEEA 180
           GY++NCYT+N +AS LS ARQN PLRA+A +++NS CS+TPGALG F+RCLGSV LV+EA
Sbjct: 121 GYKHNCYTYNAMASHLSRARQNVPLRAMAMEIVNSNCSLTPGALGFFIRCLGSVELVQEA 180

Query: 181 NFLFDQ---------------------ESREDMAIKLLE-----------KMKKLGFPPD 240
           NFLFDQ                        +  +I+LLE           +  K    P 
Sbjct: 181 NFLFDQVKVKGLCVPNSYSYNCLLEAISKSKSSSIELLEMRLQEMRDSGWEFSKYTLTPA 240

Query: 241 ISIYDVLIGGLCKKGSFEXXXXXXXXXXXXXXXXXXXXXXXXXXSS-------------- 300
           + +Y       C  G FE                           S              
Sbjct: 241 LQVY-------CNTGKFEKALNVFNEMYEKGWVDAHVMSILVLSFSKWGEVDKAFDLIAR 300

Query: 301 ------------------------------------------------------------ 360
                                                                       
Sbjct: 301 MEDRNLGLNEKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

[Close]
BLAST of Carg17781 vs. TrEMBL
Match: tr|A0A251NHV5|A0A251NHV5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G271800 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 9.3e-58
Identity = 169/497 (34.00%), Postives = 231/497 (46.48%), Query Frame = 0 

Query: 1   MALSRITFANQSLWKSVNFTNSVAFISVIFGENLSSVVVSKSYRPICSEAIN--VLPSHD 60
           MAL RI+  + +LWKS    +  A +S++  +NL++   S + RPIC+       LPSH 
Sbjct: 1   MALPRISKTHLNLWKSTKPIDPNALLSLVLAKNLTA--SSNTPRPICTRTHTGPSLPSH- 60

Query: 61  ESHISNNFISLFSQRKFSPDDPELKILAPRLNTQIVENVLNGLRNWKVAHMFFIWASKQH 120
            + + N FIS+F+++ FSPD+PELK LA RL T++VE+VL+GL++WK+AH+FF WA  Q 
Sbjct: 61  LTGVINGFISIFTEQPFSPDNPELKNLASRLTTKVVESVLDGLKSWKIAHVFFTWAPTQS 120

Query: 121 GYRNNCYTFNVIASILSHARQNAPLRAIATDVLNSRCSMTPGALGIFLRCLGSVGLVEEA 180
           GY++NCYT+N +AS LS ARQN PLRA+A +++NS CS+TPGALG F+RCLGSV LV+EA
Sbjct: 121 GYKHNCYTYNAMASHLSRARQNVPLRAMAMEIVNSNCSLTPGALGFFIRCLGSVELVQEA 180

Query: 181 NFLFDQ---------------------ESREDMAIKLLE-----------KMKKLGFPPD 240
           NFLFDQ                        +  +I+LLE           +  K    P 
Sbjct: 181 NFLFDQVKVKGLCVPNSYSYNCLLEAISKSKSSSIELLEMRLQEMRDSGWEFSKYTLTPA 240

Query: 241 ISIYDVLIGGLCKKGSFEXXXXXXXXXXXXXXXXXXXXXXXXXXSS-------------- 300
           + +Y       C  G FE                           S              
Sbjct: 241 LQVY-------CNTGKFEKALNVFNEMYEKGWVDAHVMSILVLSFSKWGEVDKAFDLIAR 300

Query: 301 ------------------------------------------------------------ 360
                                                                       
Sbjct: 301 MEDRNLGLNEKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

[Close]
BLAST of Carg17781 vs. TrEMBL
Match: tr|A0A2N9EV62|A0A2N9EV62_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6356 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.3e-54
Identity = 157/452 (34.73%), Postives = 203/452 (44.91%), Query Frame = 0 

Query: 36  SVVVSKSYRPICSEAINVLPSHDESHISNNFISLFSQRKFSPDDPELKILAPRLNTQIVE 95
           SV  S  +RPIC++  N   S   S ++N FIS+F+++ FSP +PEL  LAPRL TQ+VE
Sbjct: 23  SVPTSNPHRPICTKTHND-SSSIPSDLTNAFISIFTKKPFSPHNPELNNLAPRLTTQVVE 82

Query: 96  NVLNGLRNWKVAHMFFIWASKQHGYRNNCYTFNVIASILSHARQNAPLRAIATDVLNSRC 155
            VLN  ++WKVAH+FF WAS Q GY++NCYT+N +ASILS  RQ APL+A+ATDV+N RC
Sbjct: 83  TVLNSFKSWKVAHLFFTWASSQSGYKHNCYTYNTMASILSRVRQIAPLKAMATDVVNLRC 142

Query: 156 SMTPGALGIFLRCLGSVGLVEEANFLFDQ-----------------------ESREDMAI 215
           SM+PGALG  +RCLGSVGLV+EAN LFDQ                        S  D+  
Sbjct: 143 SMSPGALGYLVRCLGSVGLVDEANDLFDQARTMGLCVPNDYSYTCLLEAIAKSSSIDLIE 202

Query: 216 KLLEKMKKLGFPPDISIYDVLIGGLCKKGSFEXXXXXXXXXXXXXXXXXXXXXXXXXXSS 275
             L++M   G+  +      ++   C  G FE                           S
Sbjct: 203 MRLKEMHNHGWKFNKYTLTPVLQVYCNAGKFEKALSVFNDMNERGWVDAHVFSIVVLSFS 262

Query: 276 S----------------------------------------------------------- 335
                                                                       
Sbjct: 263 KMGEVDKAFELIGRMEDHNMTLNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 322

Query: 336 ---------------------------------------------EERAMIMLLEERPKD 359
                                                            MI +LEER +D
Sbjct: 323 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMIRVLEERQED 382

The following BLAST results are available for this feature:
BLAST of Carg17781 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022964306.11.4e-14567.14putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial is... [more]
XP_022990708.13.6e-13864.69putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial is... [more]
XP_022964314.16.4e-13564.46putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial is... [more]
XP_022990709.11.3e-12761.98putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial is... [more]
XP_023554296.17.8e-12563.68LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08... [more]
BLAST of Carg17781 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08310.11.6e-4246.41Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G65820.12.1e-0725.64Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G20740.12.9e-0426.43Pentatricopeptide repeat (PPR-like) superfamily protein[more]
BLAST of Carg17781 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P0C8Q6|PP368_ARATH2.8e-4146.41Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS... [more]
sp|Q9FH87|PP447_ARATH3.8e-0625.64Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis th... [more]
BLAST of Carg17781 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KMI5|A0A0A0KMI5_CUCSA3.1e-9344.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021350 PE=4 SV=1[more]
tr|A0A1S3BTR3|A0A1S3BTR3_CUCME1.7e-8348.69putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS... [more]
tr|M5VT04|M5VT04_PRUPE9.3e-5834.00Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019788m... [more]
tr|A0A251NHV5|A0A251NHV5_PRUPE9.3e-5834.00Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G271800 PE=4 SV=1[more]
tr|A0A2N9EV62|A0A2N9EV62_FAGSY1.3e-5434.73Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6356 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17781-RACarg17781-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 361..409
e-value: 4.9E-12
score: 45.7
coord: 535..584
e-value: 7.8E-16
score: 57.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 438..463
e-value: 0.025
score: 14.7
coord: 329..358
e-value: 3.3E-5
score: 23.8
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 601..633
e-value: 9.2E-7
score: 28.4
coord: 497..528
e-value: 3.4E-14
score: 52.1
coord: 202..234
e-value: 8.6E-7
score: 28.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 468..502
e-value: 1.0E-4
score: 20.2
coord: 573..606
e-value: 2.4E-10
score: 37.9
coord: 209..241
e-value: 1.4E-5
score: 23.0
coord: 503..537
e-value: 3.9E-10
score: 37.3
coord: 438..467
e-value: 4.9E-5
score: 21.2
coord: 609..642
e-value: 9.2E-8
score: 29.8
coord: 538..571
e-value: 6.6E-6
score: 24.0
coord: 365..396
e-value: 1.4E-6
score: 26.1
coord: 398..431
e-value: 2.5E-5
score: 22.1
coord: 329..361
e-value: 1.2E-6
score: 26.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 274..308
score: 5.163
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 158..192
score: 5.645
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 326..360
score: 10.578
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 431..465
score: 8.407
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 641..675
score: 8.506
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 606..640
score: 12.068
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 361..395
score: 12.617
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 206..240
score: 11.816
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 466..500
score: 10.03
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 396..430
score: 9.558
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 571..605
score: 13.702
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 501..535
score: 13.636
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 536..570
score: 11.751
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 433..566
e-value: 4.5E-38
score: 133.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 567..709
e-value: 6.5E-32
score: 113.1
coord: 275..432
e-value: 1.0E-27
score: 99.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILYSSF48452TPR-likecoord: 336..395
coord: 465..530
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 182..714
coord: 1..173
NoneNo IPR availablePANTHERPTHR24015:SF342SUBFAMILY NOT NAMEDcoord: 182..714
coord: 1..173