Carg17651 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17651
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	WD repeat-containing protein DWA2-like
Location	Cucurbita_argyrosperma_scaffold_119 : 605740 .. 606768 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTTGTTTCCAATTGTAAATCAATTAACCATTCCCACTATTTGCGTTCTCTTTCCAAACAAAAATCTGCTGGACAGTGTTCTTTGGTGGCCATCTGGTAGACATGATAAGCTGATCAGCATTGATGAGGAAAATATTTTACTATGGAGCTTGGATTGTTCAAGAAAACTTGCTCAGGTAGACTTAACTCGGTAGTGTTTGGTGGTGTGACTGGATTCTATATCGAGTTAATTTCACTTTTGCACCACTTTGTTGTATATGCATGGGTAGGCTAAGGTTCAGGTTATAATTTTTTAGATAAGATTGAATTCATTTATCAAGTAAAAACTAGGCCATAGGAGGGAGTTAAGGCATCAATCCCATGACACCCAAAGAATTGCAATCTTTTTTTGTAATTGGTGTTTATAACAAAAGGAAACTGATCTTGTAACACTCCTTTTTCCTCTCTGGAAATACCAATGAGTTGGATTTTTTTTTTCCCTTTCAAACCAAATCTCTGGAACAATTGTTAGAACTACATTGTCTAAAAGGTTTTCAGCTTTTATCCTGTTAAGGTTATCAACAGCAACTGATCTAGACATTCCAGAACCTCTAGAAAGTAGACTAGCAGCCTGCTAGACCAAATTCATTTAGAAGTCCCTGCCAATGTTTTGTCACAAACAACAGTTCCCAAAAGTGTAGTTCTGATTTTCCTGCTCTTTTATGCATTACACAATTGGGGAGACAGAGCTTTGCCCAGCTGTCTTTTCGAACAAAGCCATCCATCATCGTTTCTGAGACTGAAGTCTGTAGAAAAAATCTCACTTCCAGAAGAGCTTTCTCCTCCCATAGGCGAAGCCAGCAGATTATAAAGGTTTTCCCAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAATTGTTCACCTAGTCAGCTAGTGAACTGATTAGACACCTCTATTTTGCGGGTGACTTTATTGTTAGATTTCTCATGGGACCAACGAGATACATTCTGGAGTTGTTATCTGCACAAGGAAGGAGCTTGTAA

mRNA sequence

ATGAACTTGTTTCCAATTGTAAATCAATTAACCATTCCCACTATTTGCGTTCTCTTTCCAAACAAAAATCTGCTGGACAGTGTTCTTTGGTGGCCATCTGGTAGACATGATAAGCTGATCAGCATTGATGAGGAAAATATTTTACTATGGAGCTTGGATTGTTCAAGAAAACTTGCTCAGGTAGACTTAACTCGATTTCTCATGGGACCAACGAGATACATTCTGGAGTTGTTATCTGCACAAGGAAGGAGCTTGTAA

Coding sequence (CDS)

ATGAACTTGTTTCCAATTGTAAATCAATTAACCATTCCCACTATTTGCGTTCTCTTTCCAAACAAAAATCTGCTGGACAGTGTTCTTTGGTGGCCATCTGGTAGACATGATAAGCTGATCAGCATTGATGAGGAAAATATTTTACTATGGAGCTTGGATTGTTCAAGAAAACTTGCTCAGGTAGACTTAACTCGATTTCTCATGGGACCAACGAGATACATTCTGGAGTTGTTATCTGCACAAGGAAGGAGCTTGTAA

Protein sequence

MNLFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVDLTRFLMGPTRYILELLSAQGRSL

Homology

[Close]

BLAST of Carg17651 vs. NCBI nr
Match: XP_022946164.1 (WD repeat-containing protein DWA2-like [Cucurbita moschata])

HSP 1 Score: 79.0 bits (193), Expect = 8.9e-12
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 3   LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD 62
           L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK+AQV 
Sbjct: 108 LYGELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKIAQVQ 167

Query: 63  ------LTRFLMGPT 72
                 L  +L G T
Sbjct: 168 SKESAGLLHYLSGGT 182

[Close]

BLAST of Carg17651 vs. NCBI nr
Match: XP_022999730.1 (WD repeat-containing protein DWA2-like [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 8.9e-12
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 3   LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD 62
           L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK+AQV 
Sbjct: 108 LYGELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKIAQVQ 167

Query: 63  ------LTRFLMGPT 72
                 L  +L G T
Sbjct: 168 SKESAGLLHYLSGGT 182

[Close]

BLAST of Carg17651 vs. NCBI nr
Match: XP_023547262.1 (WD repeat-containing protein DWA2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 8.9e-12
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 3   LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQVD 62
           L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK+AQV 
Sbjct: 108 LYGELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKIAQVQ 167

Query: 63  ------LTRFLMGPT 72
                 L  +L G T
Sbjct: 168 SKESAGLLHYLSGGT 182

[Close]

BLAST of Carg17651 vs. NCBI nr
Match: XP_022153181.1 (WD repeat-containing protein DWA2 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 3   LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV 62
           L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK+AQV
Sbjct: 108 LYGELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKVAQV 166

[Close]

BLAST of Carg17651 vs. NCBI nr
Match: XP_008464867.1 (PREDICTED: WD repeat-containing protein DWA2-like isoform X1 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 2.6e-11
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 3   LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV 62
           L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK AQV
Sbjct: 101 LYGELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQV 159

[Close]

BLAST of Carg17651 vs. TAIR10
Match: AT1G20540.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 4.9e-12
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 3   LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV 62
           L+  +N   +  +  L  +   ++ VLWWPSGR DKLISIDE+NI LWSLDCS+K A+V
Sbjct: 101 LYGQLNSPQLERVASLDAHVGKINCVLWWPSGRCDKLISIDEQNIFLWSLDCSKKSAEV 159

[Close]

BLAST of Carg17651 vs. TAIR10
Match: AT1G76260.1 (DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 8   NQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV 62
           N  T+  +  L  +   ++ VLW PSG  DKLIS+DE+N++ WSLD S+K A+V
Sbjct: 106 NSSTLECVASLDAHVGKINCVLWCPSGNSDKLISMDEQNLVFWSLDSSKKSAEV 159

[Close]

BLAST of Carg17651 vs. Swiss-Prot
Match: sp|Q6NPN9|DWA2_ARATH (WD repeat-containing protein DWA2 OS=Arabidopsis thaliana OX=3702 GN=DWA2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-07
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 8   NQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV 62
           N  T+  +  L  +   ++ VLW PSG  DKLIS+DE+N++ WSLD S+K A+V
Sbjct: 106 NSSTLECVASLDAHVGKINCVLWCPSGNSDKLISMDEQNLVFWSLDSSKKSAEV 159

[Close]

BLAST of Carg17651 vs. TrEMBL
Match: tr|A0A1S3CMG4|A0A1S3CMG4_CUCME (WD repeat-containing protein DWA2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502632 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-11
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 3   LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV 62
           L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK AQV
Sbjct: 101 LYGELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQV 159

[Close]

BLAST of Carg17651 vs. TrEMBL
Match: tr|A0A1S3CMK2|A0A1S3CMK2_CUCME (WD repeat-containing protein DWA2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502632 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-11
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 3   LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQ 61
           L+  +N   +  +  L  + + ++ VLWWPSGRHDKLISIDEENILLWSLDCSRK AQ
Sbjct: 101 LYGELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQ 158

[Close]

BLAST of Carg17651 vs. TrEMBL
Match: tr|A0A1R3K7A8|A0A1R3K7A8_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02617 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-11
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 3   LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV 62
           L+  +N   +  I  L  +   ++ VLWWPSGRHDKLISIDEEN+LLWSLDCS+K AQV
Sbjct: 101 LYGQLNSPQLERIASLDAHVGKINCVLWWPSGRHDKLISIDEENLLLWSLDCSKKAAQV 159

[Close]

BLAST of Carg17651 vs. TrEMBL
Match: tr|A0A1R3KVP8|A0A1R3KVP8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_03999 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-11
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 3   LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV 62
           L+  +N   +  I  L  +   ++ VLWWPSGRHDKLISIDEEN+LLWSLDCS+K AQV
Sbjct: 101 LYGQLNSPQLERIASLDAHVGKINCVLWWPSGRHDKLISIDEENLLLWSLDCSKKAAQV 159

[Close]

BLAST of Carg17651 vs. TrEMBL
Match: tr|A0A0A0KDH1|A0A0A0KDH1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358120 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.5e-11
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 3   LFPIVNQLTIPTICVLFPNKNLLDSVLWWPSGRHDKLISIDEENILLWSLDCSRKLAQV 62
           L+  +N   +  +  L  + + ++ V+WWPSGRHDKLISIDEENI LWSLDCSRK AQV
Sbjct: 108 LYGELNSPQLERVTSLDEHASKINCVIWWPSGRHDKLISIDEENIFLWSLDCSRKTAQV 166

The following BLAST results are available for this feature:

BLAST of Carg17651 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946164.1	8.9e-12	53.33	WD repeat-containing protein DWA2-like [Cucurbita moschata]	[more]
XP_022999730.1	8.9e-12	53.33	WD repeat-containing protein DWA2-like [Cucurbita maxima]	[more]
XP_023547262.1	8.9e-12	53.33	WD repeat-containing protein DWA2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022153181.1	1.5e-11	61.02	WD repeat-containing protein DWA2 [Momordica charantia]	[more]
XP_008464867.1	2.6e-11	61.02	PREDICTED: WD repeat-containing protein DWA2-like isoform X1 [Cucumis melo]	[more]

BLAST of Carg17651 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20540.1	4.9e-12	52.54	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G76260.1	1.1e-08	46.30	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2	[more]

BLAST of Carg17651 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NPN9\|DWA2_ARATH	2.0e-07	46.30	WD repeat-containing protein DWA2 OS=Arabidopsis thaliana OX=3702 GN=DWA2 PE=1 S...	[more]

BLAST of Carg17651 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CMG4\|A0A1S3CMG4_CUCME	1.7e-11	61.02	WD repeat-containing protein DWA2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1S3CMK2\|A0A1S3CMK2_CUCME	5.0e-11	60.34	WD repeat-containing protein DWA2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1R3K7A8\|A0A1R3K7A8_COCAP	6.5e-11	59.32	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02617 PE=4 ...	[more]
tr\|A0A1R3KVP8\|A0A1R3KVP8_9ROSI	6.5e-11	59.32	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_03999 PE=4 SV=1	[more]
tr\|A0A0A0KDH1\|A0A0A0KDH1_CUCSA	8.5e-11	57.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358120 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17651-RA	Carg17651-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17651	Lsi08G008000	Bottle gourd (USVL1VR-Ls)	carlsiB120

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17651	Cucumber (Gy14) v1	carcgyB0164
Carg17651	Cucurbita maxima (Rimu)	carcmaB0172
Carg17651	Cucurbita maxima (Rimu)	carcmaB0174
Carg17651	Cucurbita maxima (Rimu)	carcmaB0176
Carg17651	Cucurbita moschata (Rifu)	carcmoB0183
Carg17651	Cucurbita moschata (Rifu)	carcmoB0181
Carg17651	Cucurbita pepo (Zucchini)	carcpeB0191
Carg17651	Cucurbita pepo (Zucchini)	carcpeB0193
Carg17651	Wild cucumber (PI 183967)	carcpiB0150
Carg17651	Cucumber (Chinese Long) v2	carcuB0146
Carg17651	Cucumber (Chinese Long) v3	carcucB0154
Carg17651	Melon (DHL92) v3.5.1	carmeB0135
Carg17651	Melon (DHL92) v3.6.1	carmedB0139
Carg17651	Watermelon (Charleston Gray)	carwcgB0129
Carg17651	Watermelon (97103) v1	carwmB0128
Carg17651	Watermelon (97103) v2	carwmbB0139
Carg17651	Wax gourd	carwgoB0169
Carg17651	Silver-seed gourd	carcarB159
Carg17651	Cucumber (Gy14) v2	carcgybB0144