Carg17589 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17589
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Neurogenic locus notch-like protein
Location	Cucurbita_argyrosperma_scaffold_183 : 471483 .. 476342 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGTGCGATTCCGGCTGGAAGCGTACTCGCGACTCCGACGACGATCTCACTTTTCTTCCTTGCGTCATCCCTAACTGTAAGCTTCTCTCTCTCTCTCTCTCAATCTCTCTCAATCTCTCTCTCTCCGATTTCTCTGTTCGTCGAAAATGGCGATCGAAATCGAATCATCCAACTCTCTGTTTCTTCTCCTTGTTTTGAAGGTTCTCTCGACTATGGCTGCCAGTCGGCGCCGCCGCCGGTACCAGATAAGCCAGTTCCGAGGAACTCCTCCTTCTTCAATCGTAAGTCATTTTCCGGCCAAGTTTCCCCAAATCTTTCTTCGCTACTTTCCGTCGCAATTTCCGAAGAACAAAACCCTAATTTTAAATAAATAAATAATAATATATATATAGTATAAAATGAGTTGCTTTTATATATATTATATAATATATCTATATATTTTCACACTTTATATTATTTATTTATTGGATAATTTTATAAGTCGAATTTAAAAAATAGTTATTTTGTTTATGATTCTATGTATTTATTTTTATTTTTATTTTATTTTATAATTAAAATTTCAATTATTTAGTCTATTTTAACTTTTAAAATTAAAATTTTAACATATATATTGAAATTGATTATTTTATTTTTATATTTTATTTGGTAACTATAATTTTAGTTTTTAATATTTGGATAATATTTCTTTTTTCTTTTGGTAGTTGTTTTTAATATTTTTAAAATTCTAATTAAATTATTATTAATCCAATTTTTTTTAATAATAAGGATTAAATTTTAAAAAATACTTAAAATATAATTAACGTTTTAATTATTTGTATACTTAATTCAATCTCTTAACCTGTCCTTGCTAATATTAAATATTTTATTTTAAAATAAATGTTTGGAGTTTTTAAATATACGAGACTGCCACCTTTCATATGCTTAGGTTGACTTGATTATGTAAATTATTTATATTGTTTTTAATATAATTAGCGTTTTAATTATTTGTTTTTAATAAAAAAAAAGAAATTAATTAAGTCTTCAAAAAATAATAATTATCAATATGATTTTTTTTTTTATTTATATAATTGTCTTGCAGCTTGCTATTGGGCCTATTGTGGAGAAGGCACGTGTGAGAAGAACAATACGTATGCACACACGTGTGAATGCAGATCTGGCTTCTACAATCTCCTCAACATTTCTGCCTTCCCTTGCTATAGTGATTGTAAGATTCACTATTTACTCAACTAAAAATATAATTTCAATTAATTCGGGTAATATTTAGTCGTTAAATTTTTAAAATATTGTTTTCGAGTAATTTTGAAATTACGATCTAATTTTTGTTATTATTATATTATTTATAGGTACGATCGGGTCGGATTGTGCAAAACTTGGGATTAAAGTTGCTAATGTAAATTCAAGCGATAATGGAAGTGGGGGTTCTGGTACCGGACAAGGTAGGATGTTCGATTTTTTTTTTTTTTTTTTTCGTTTTATATTTTGAAAATATTAAAAAAGATAGGTAGAATTTTAAAAATAGTTCTAGAATCACAATAAAATAAGCAAGGAAATTGTTAATAAATTATAATAATAAATAATAAAAGACATGAATTCCATTTAAATAAAAAAAAAATGTTTTGAATTTTGATATTACATTATTATAATAAAAAACATATCAATTAAAAAAAAATCCACATCGTGATATTTTTAAATAATTTATTTATTCACCATTAATTAAAATATTCATCTTCTTCTGAATAATATATATATATAAATAATAAATTTTTAAAAAATTATGGTTTATTGGGTCAAATTTTCAACCATGTGGTTCTTGTTTTCTACAAATTTTTTTATTCATTGCTTATAATTAAAGTTTTGTCAATTTCTTGATTTATTATTTAATTAATGTTAAAATTTGAGGGTTAATAAAATAATTAGTTTAATTTACATAATGACAATGATATGGGGATTAAAAGTCAAATTAATTTTTTTTTTAATTTTTACTTTTTTAAAAATATTTTATAAATAATTCAAGATCTTGGACATTTTTATTTTAAAAAATCATGATTTTATTTAGCATTCAAGATCTTGATTATTTGTAATAAAATAAAATAAAATAAAATAAAATAAAATAAATAAGTCATGCCTTGCGCATCATCTGGTTGAAAAAGTATGCAAATTATTCCCACGTATTATACATTTATTTTCAAAGTTTGACATTATGACACGTGGCAACAAGTCCACCAACTTGCTTTATTAAAAACAATTAAAAAAGTTATTTTTCCATAAACCTACAAAGTCATTGAAAATGTTGCCTTACAATTTAATCTACCTATATATATATATATAAATAAAGTTTTTGAGAGTAATATTAAGGACATAAGAATTGATAGTTATTACTTATATCAACAAGATATTATAATTTTCAATAACTCAATTATAGAAGCGATAAAGTTGGGAATGTTTGGTTTGGAGGTAGCGATCCTATGTTGGGTATAGAGATGTCCATGGGACAGGGCAAGTAATTGGGTGGATATGGGGAATATAATCTTGTCCCCAACCCAATTTATCTAACGGAAAAAAATGTTCCCCATTCCTTATCTAAATGGAGAATCCCCTCCCTGTTTGGTGTGAGTCCTTGTGGATAAAATAGACATCTCTAGTTGGGTGGCTGTGAGACGGGGAGAAGAACGAAACACCTTTATAAGGGTATGGAAACATCTCTCTAACAGACGTGTTTTAAAAACCTTAAGGGGAAGCGAGAAAACCCAAAGAGGACAATATCTACTAGTGGTGGGTCTGAGCCGTTACAAATGGAATCAGAGTTAGACACCAGGCGATGTGCCAGCTTGGAGGTTGTTCCTCGAAGGGGGGTAGACACGAGGCGAAATGCCAGTAAGGATGCTGGCTCAAGAAGGGAGGTGGATTTGGTGGGGGTCCCATTAGAAAAAGGAATGAGTGCCAACAAAGACTCTAGGCCTTGAAGGGAGTGGATTGTGAGATCCACGTTAATTGGAGAGGAGAACGAAACACCCTTTATAAGGGTGTGGATACCTCTCCATGGATTTTAAAAACCTTGAGGGGAAGCCCAAAGAGGACAATATCTGCCAGCAGTGGACTTAGATCGTTACAATGACTTTCTAAAACTTTTTCTAATAAGTACATGAGTGAGTAAAAAACGTGCTAAAATAACACGTGTTGGTCTAAAAGGACAATCTTCACTTTTAGGATAAAACATCTTACAAAAACTCTATGATAAGTAAGTTCCCTCTTACAACTACTTCAAAACAAGTATATAATGTAACTATGTCATGAGAGATAATCAGATGCACAAGAACGTCATATTCCCTAAGATGTTATTGATGCTCATTTATCCTTCTTCCTTTCATCAGGAAACTCCCTTCTACCAGGAAAGTTTGGGTGGGTGGCTATGGCAATTTTATTTGGCATGACTATGGAGCTTTGGAACTAGCAGATCCTTGATTATATATATAAAATTGATATTCATTTATGTTGTTTACACTATGTTTTGGTTTCATATCGATTGTTATTATATGTTGTGTCTGAGTTTGGTACATTATCATATATATAATAAATAAATCATAGCTCTAGTCATTAGAGGCTGCTGATCACTGTTTTTGTACATATATTCATCTTACTATATTATTTCTACAATTTGCACAAGATATATCCCATCCCAAATATTCATCTTGGTACAATTTACAAATATATCCCATCCCAGATTGAGCAGATCATCAGCAAAAATTTGCACAAGATTTCTTATAATACAGAGATGAAATCAAGCTGACTATCACCAAGAAATCATGAACAAAAATGGAAAAGTTTCGATTCAAATCTCTAATATACGGATTAGAAGAAAGTAAAAGGAATCGAACGAACAGTTTTTAGCAGAACTCACCAATGGAAGGTAATGGAAACGGAAATCATTTGGTCTTGATATCGATTCCATCTTTTCCGGCGATGATTACGGCGGTCGCCATGTCCAAGAAGAGTCCGTGCTCCACCACGCCTTCAAACGCTGAAATCTCTTTTCCGGCGGCTAATCCGTCTTTGATTGGAGTCTTGAAATATAAATCGACTATGTAATTTGAATTATCGGTGACGTATGGCTTCCCATCGGCGTCCAATCGGAGCTTGGCCTCGCAATCTTCGTCCTTGAATAGGTCTTGAAGCCTCACCAAATTGTATTTCCAGCAGAACTGAACGACTTCCACCGGCATCGCGAGACCGCTTCCGCCGAGGCCGTCAACTAATTTAGTATCATCGACGACGACGACGAACTTATCGGAAGCAGCCTCAACCATTTTCTCACGCAACAAAGCGCCGCCGCGGCCTTTAACGAGATTCAGATCTGGATCGACCTCATCAGCGCCATCGATAGCCAAATCGAGATGCGGATGATCATCAAGAACAGAGAGAGGAATTCCTAATGCCTTAGCTTGCTCCTCCGTCCGCTTGGAGGTAGGGATTCCAACAATGTCACTCAATTGATTACTCTTGAGAAGTTCGCCAATCTTAGCGACAACGAAAGCGGCGGTGGAGCCAGTGCCGAGGCCGAGAACCATTCCACTCTTGACATACTCAACAGCCTTGTCGGCAGCAAGCTTCTTGAGGTCGTCTTGAGTGAGAGTGGAGACGGAGCGGGCTTGAACGGAGAGAGGACGGCAGCGGTGCTGGTTATTGGCGGAAAGATTAAGAGGCTTTGGTGATCGGAGAAGAAGGTTGGCTATGGAGGAAACATGGCGGGAGGAAGAGAGAGAAGGAGGAGAGATGAGAGAGAGGGAAGCCATGGATGAGAAAGGGATAGGGTTTTGAGTTTCTAGTGGCTAATGTCTCTGCATTTTCTTCCTTTTATA

mRNA sequence

ATGCGAGTGCGATTCCGGCTGGAAGCGTACTCGCGACTCCGACGACGATCTCACTTTTCTTCCTTGCGTTCTCTCGACTATGGCTGCCAGTCGGCGCCGCCGCCGGTACCAGATAAGCCAGTTCCGAGGAACTCCTCCTTCTTCAATCCTTGCTATTGGGCCTATTGTGGAGAAGGCACGTGTGAGAAGAACAATACGTATGCACACACGTGTGAATGCAGATCTGGCTTCTACAATCTCCTCAACATTTCTGCCTTCCCTTGCTATAGTACGATCGGGTCGGATTGTGCAAAACTTGGGATTAAAGTTGCTAATGTAAATTCAAGCGATAATGGAAGTGGGGGTTCTGGTACCGGACAAGGAAACTCCCTTCTACCAGGAAAGTTTGGGTGGGTGGCTATGGCAATTTTATTTGGCATGACTATGGAGCTTTGGAACTAGCAGATCCTTGATTATATATATAAAATTGATATTCATTTATGTTGTTTACACTATGTTTTGGTTTCATATCGATTGTTATTATATGTTGTGTCTGAGTTTGGTACATTATCATATATATAATAAATAAATCATAGCTCTAGTCATTAGAGGCTGCTGATCACTGTTTTTGTACATATATTCATCTTACTATATTATTTCTACAATTTGCACAAGATATATCCCATCCCAAATATTCATCTTGGTACAATTTACAAATATATCCCATCCCAGATTGAGCAGATCATCAGCAAAAATTTGCACAAGATTTCTTATAATACAGAGATGAAATCAAGCTGACTATCACCAAGAAATCATGAACAAAAATGGAAAAGTTTCGATTCAAATCTCTAATATACGGATTAGAAGAAAGTAAAAGGAATCGAACGAACAGTTTTTAGCAGAACTCACCAATGGAAGGTAATGGAAACGGAAATCATTTGGTCTTGATATCGATTCCATCTTTTCCGGCGATGATTACGGCGGTCGCCATGTCCAAGAAGAGTCCGTGCTCCACCACGCCTTCAAACGCTGAAATCTCTTTTCCGGCGGCTAATCCGTCTTTGATTGGAGTCTTGAAATATAAATCGACTATGTAATTTGAATTATCGGTGACGTATGGCTTCCCATCGGCGTCCAATCGGAGCTTGGCCTCGCAATCTTCGTCCTTGAATAGGTCTTGAAGCCTCACCAAATTGTATTTCCAGCAGAACTGAACGACTTCCACCGGCATCGCGAGACCGCTTCCGCCGAGGCCGTCAACTAATTTAGTATCATCGACGACGACGACGAACTTATCGGAAGCAGCCTCAACCATTTTCTCACGCAACAAAGCGCCGCCGCGGCCTTTAACGAGATTCAGATCTGGATCGACCTCATCAGCGCCATCGATAGCCAAATCGAGATGCGGATGATCATCAAGAACAGAGAGAGGAATTCCTAATGCCTTAGCTTGCTCCTCCGTCCGCTTGGAGGTAGGGATTCCAACAATGTCACTCAATTGATTACTCTTGAGAAGTTCGCCAATCTTAGCGACAACGAAAGCGGCGGTGGAGCCAGTGCCGAGGCCGAGAACCATTCCACTCTTGACATACTCAACAGCCTTGTCGGCAGCAAGCTTCTTGAGGTCGTCTTGAGTGAGAGTGGAGACGGAGCGGGCTTGAACGGAGAGAGGACGGCAGCGGTGCTGGTTATTGGCGGAAAGATTAAGAGGCTTTGGTGATCGGAGAAGAAGGTTGGCTATGGAGGAAACATGGCGGGAGGAAGAGAGAGAAGGAGGAGAGATGAGAGAGAGGGAAGCCATGGATGAGAAAGGGATAGGGTTTTGAGTTTCTAGTGGCTAATGTCTCTGCATTTTCTTCCTTTTATA

Coding sequence (CDS)

ATGCGAGTGCGATTCCGGCTGGAAGCGTACTCGCGACTCCGACGACGATCTCACTTTTCTTCCTTGCGTTCTCTCGACTATGGCTGCCAGTCGGCGCCGCCGCCGGTACCAGATAAGCCAGTTCCGAGGAACTCCTCCTTCTTCAATCCTTGCTATTGGGCCTATTGTGGAGAAGGCACGTGTGAGAAGAACAATACGTATGCACACACGTGTGAATGCAGATCTGGCTTCTACAATCTCCTCAACATTTCTGCCTTCCCTTGCTATAGTACGATCGGGTCGGATTGTGCAAAACTTGGGATTAAAGTTGCTAATGTAAATTCAAGCGATAATGGAAGTGGGGGTTCTGGTACCGGACAAGGAAACTCCCTTCTACCAGGAAAGTTTGGGTGGGTGGCTATGGCAATTTTATTTGGCATGACTATGGAGCTTTGGAACTAG

Protein sequence

MRVRFRLEAYSRLRRRSHFSSLRSLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNISAFPCYSTIGSDCAKLGIKVANVNSSDNGSGGSGTGQGNSLLPGKFGWVAMAILFGMTMELWN

Homology

[Close]

BLAST of Carg17589 vs. NCBI nr
Match: XP_022937685.1 (uncharacterized protein LOC111444015 [Cucurbita moschata])

HSP 1 Score: 249.6 bits (636), Expect = 6.5e-63
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 24  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNI 83
           SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNI
Sbjct: 85  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNI 144

Query: 84  SAFPCYS--TIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWVAMAILFGMT 143
           SAFPCYS  TIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWVAMAILFGMT
Sbjct: 145 SAFPCYSDCTIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWVAMAILFGMT 204

Query: 144 MELWN 147
           MELWN
Sbjct: 205 MELWN 209

[Close]

BLAST of Carg17589 vs. NCBI nr
Match: XP_022965938.1 (uncharacterized protein LOC111465666 [Cucurbita maxima])

HSP 1 Score: 247.3 bits (630), Expect = 3.2e-62
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 24  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNI 83
           SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNI
Sbjct: 85  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNI 144

Query: 84  SAFPCYS--TIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWVAMAILFGMT 143
           SAFPCYS  TIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGW AMAI+FGMT
Sbjct: 145 SAFPCYSDCTIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWAAMAIMFGMT 204

Query: 144 MELWN 147
           MELWN
Sbjct: 205 MELWN 209

[Close]

BLAST of Carg17589 vs. NCBI nr
Match: XP_023521139.1 (uncharacterized protein LOC111784759 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.3 bits (630), Expect = 3.2e-62
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 24  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNI 83
           SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCEC SGFYNLLNI
Sbjct: 61  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECSSGFYNLLNI 120

Query: 84  SAFPCYS--TIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWVAMAILFGMT 143
           SAFPCYS  TIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWVAMAILFGMT
Sbjct: 121 SAFPCYSDCTIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWVAMAILFGMT 180

Query: 144 MELWN 147
           MELWN
Sbjct: 181 MELWN 185

[Close]

BLAST of Carg17589 vs. NCBI nr
Match: XP_023537938.1 (uncharacterized protein LOC111798832 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.3 bits (630), Expect = 3.2e-62
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 24  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNI 83
           SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCEC SGFYNLLNI
Sbjct: 85  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECSSGFYNLLNI 144

Query: 84  SAFPCYS--TIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWVAMAILFGMT 143
           SAFPCYS  TIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWVAMAILFGMT
Sbjct: 145 SAFPCYSDCTIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWVAMAILFGMT 204

Query: 144 MELWN 147
           MELWN
Sbjct: 205 MELWN 209

[Close]

BLAST of Carg17589 vs. NCBI nr
Match: XP_004139226.1 (PREDICTED: uncharacterized protein LOC101221137 [Cucumis sativus] >KGN60821.1 hypothetical protein Csa_2G011540 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 5.6e-46
Identity = 96/126 (76.19%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 24  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNI 83
           +LDYGCQ APPPVP+KPVP+NSSFFNPCYWAYCG+G C +N TY HTCEC+SG+YNLLNI
Sbjct: 88  TLDYGCQPAPPPVPEKPVPKNSSFFNPCYWAYCGQGDCVQNRTYIHTCECQSGYYNLLNI 147

Query: 84  SAFPCYS--TIGSDCAKLGIKVANVNSS-DNGXXXXXXXQGNSLLPGKFGWVAMAILFGM 143
           S FPCYS  TIGSDCAKLGIKVANVN +    XXXXXXX    +LPGKF WVA+AILF M
Sbjct: 148 STFPCYSDCTIGSDCAKLGIKVANVNGTXXXXXXXXXXXXXXXILPGKFQWVALAILFAM 207

Query: 144 TMELWN 147
            MELWN
Sbjct: 208 AMELWN 213

[Close]

BLAST of Carg17589 vs. TAIR10
Match: AT4G14746.1 (EGF-like (InterPro:IPR006210))

HSP 1 Score: 84.3 bits (207), Expect = 6.6e-17
Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 24  SLDYGCQSAPPPVPDKPVPRN--SSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLL 83
           + D  C  A  P   KP P++  +SFF+PC W  CG G C  +  + ++C CR G+ NL+
Sbjct: 85  TFDLTCGEAASPAQPKPPPKDNITSFFDPCQWMDCGGGLCNSSMPFQYSCNCREGYSNLM 144

Query: 84  NISAFPCYS--TIGSDCAKLGIKVANVNSSD-NGXXXXXXXQGNSLLPGKFGWVAMAI 137
           NI+ FPC     +G DC  LGI ++N +SS           QG +L      W+ + +
Sbjct: 145 NITTFPCLKQCALGMDCLNLGIPLSNSSSSSPPALPDSSKNQGLNLRGSSLWWITLCV 202

[Close]

BLAST of Carg17589 vs. TrEMBL
Match: tr|A0A0A0LLE2|A0A0A0LLE2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G011540 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.7e-46
Identity = 96/126 (76.19%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 24  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNI 83
           +LDYGCQ APPPVP+KPVP+NSSFFNPCYWAYCG+G C +N TY HTCEC+SG+YNLLNI
Sbjct: 88  TLDYGCQPAPPPVPEKPVPKNSSFFNPCYWAYCGQGDCVQNRTYIHTCECQSGYYNLLNI 147

Query: 84  SAFPCYS--TIGSDCAKLGIKVANVNSS-DNGXXXXXXXQGNSLLPGKFGWVAMAILFGM 143
           S FPCYS  TIGSDCAKLGIKVANVN +    XXXXXXX    +LPGKF WVA+AILF M
Sbjct: 148 STFPCYSDCTIGSDCAKLGIKVANVNGTXXXXXXXXXXXXXXXILPGKFQWVALAILFAM 207

Query: 144 TMELWN 147
            MELWN
Sbjct: 208 AMELWN 213

[Close]

BLAST of Carg17589 vs. TrEMBL
Match: tr|A0A2I4F3T7|A0A2I4F3T7_9ROSI (uncharacterized protein LOC108995230 OS=Juglans regia OX=51240 GN=LOC108995230 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.4e-37
Identity = 74/122 (60.66%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 24  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNI 83
           +LDYGCQ APPPVP+K +PRN S F+PCYWAYCGEGTC KN T+ H CEC+SGF+NLLN+
Sbjct: 87  TLDYGCQPAPPPVPEKEIPRNLSAFDPCYWAYCGEGTCTKNKTHTHRCECKSGFFNLLNV 146

Query: 84  SAFPCYS--TIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWVA-MAILFGM 143
           SAFPCYS  T+GSDC++LGI VA  ++  +G       QG S LPGKF W+A + ++ G+
Sbjct: 147 SAFPCYSECTLGSDCSRLGITVAKTSADGSG---GSTGQGTSFLPGKFHWMATLMVILGI 205

[Close]

BLAST of Carg17589 vs. TrEMBL
Match: tr|A0A1S4DZT9|A0A1S4DZT9_CUCME (uncharacterized protein LOC103499567 OS=Cucumis melo OX=3656 GN=LOC103499567 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.1e-37
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 24  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNI 83
           +L+YGCQ APPPVP+KPVP+NSSFFNPCYWAYCGEG C +N TY HTCECR GFYNLLNI
Sbjct: 88  TLNYGCQPAPPPVPEKPVPKNSSFFNPCYWAYCGEGDCVRNKTYIHTCECRPGFYNLLNI 147

Query: 84  SAFPCYS--TIGSDCAKLGIKVANVNSS 110
           S FPCY+  TIGSDCAKLGIKVANVN +
Sbjct: 148 STFPCYTDCTIGSDCAKLGIKVANVNGT 175

[Close]

BLAST of Carg17589 vs. TrEMBL
Match: tr|A0A2P5DKU2|A0A2P5DKU2_PARAD (Neurogenic locus notch-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_054150 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 72/123 (58.54%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 24  SLDYG-CQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLN 83
           +L+YG CQ APPPVP+K +PRN S F+PCYWAYCGEGTC KN T+ HTC+C  GF+NLLN
Sbjct: 89  TLNYGSCQPAPPPVPEKEIPRNLSAFDPCYWAYCGEGTCTKNRTHTHTCQCNPGFFNLLN 148

Query: 84  ISAFPCYS--TIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWVAMAIL-FG 143
           +SAFPCYS  T+GSDC++LGIKVAN ++S          Q  S LPGKF W+ ++++ FG
Sbjct: 149 VSAFPCYSECTLGSDCSRLGIKVAN-STSGGVDGNNNTNQATSYLPGKFQWLIISMVSFG 208

[Close]

BLAST of Carg17589 vs. TrEMBL
Match: tr|A0A061F245|A0A061F245_THECC (Slit protein C-product, putative OS=Theobroma cacao OX=3641 GN=TCM_026380 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 71/124 (57.26%), Postives = 87/124 (70.16%), Query Frame = 0


Query: 24  SLDYGCQSAPPPVPDKPVPRNSSFFNPCYWAYCGEGTCEKNNTYAHTCECRSGFYNLLNI 83
           +LDY CQ APPPVP+K VP NSSFF+PCYW YCGEGTC K  TY H CECR G+ NLLN 
Sbjct: 90  TLDYSCQPAPPPVPEKEVPHNSSFFDPCYWTYCGEGTCNKTATYKHVCECRPGYSNLLNK 149

Query: 84  SAFPCYS--TIGSDCAKLGIKVANVNSSDNGXXXXXXXQGNSLLPGKFGWVAMAILFGMT 143
           + FPCYS  T+GSDC++LGI VA+  S+ +G       +  + LPGK  WVA+ ++  M 
Sbjct: 150 TYFPCYSQCTLGSDCSRLGITVADQTSTPDG------GKAYTFLPGKLHWVAV-LMMSMA 206

Query: 144 MELW 146
           M LW
Sbjct: 210 MVLW 206

The following BLAST results are available for this feature:

BLAST of Carg17589 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937685.1	6.5e-63	98.40	uncharacterized protein LOC111444015 [Cucurbita moschata]	[more]
XP_022965938.1	3.2e-62	96.80	uncharacterized protein LOC111465666 [Cucurbita maxima]	[more]
XP_023521139.1	3.2e-62	97.60	uncharacterized protein LOC111784759 [Cucurbita pepo subsp. pepo]	[more]
XP_023537938.1	3.2e-62	97.60	uncharacterized protein LOC111798832 [Cucurbita pepo subsp. pepo]	[more]
XP_004139226.1	5.6e-46	76.19	PREDICTED: uncharacterized protein LOC101221137 [Cucumis sativus] >KGN60821.1 hy...	[more]

BLAST of Carg17589 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14746.1	6.6e-17	34.75	EGF-like (InterPro:IPR006210)	[more]

BLAST of Carg17589 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg17589 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LLE2\|A0A0A0LLE2_CUCSA	3.7e-46	76.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G011540 PE=4 SV=1	[more]
tr\|A0A2I4F3T7\|A0A2I4F3T7_9ROSI	1.4e-37	60.66	uncharacterized protein LOC108995230 OS=Juglans regia OX=51240 GN=LOC108995230 P...	[more]
tr\|A0A1S4DZT9\|A0A1S4DZT9_CUCME	3.1e-37	80.68	uncharacterized protein LOC103499567 OS=Cucumis melo OX=3656 GN=LOC103499567 PE=...	[more]
tr\|A0A2P5DKU2\|A0A2P5DKU2_PARAD	1.5e-34	58.54	Neurogenic locus notch-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x...	[more]
tr\|A0A061F245\|A0A061F245_THECC	1.2e-33	57.26	Slit protein C-product, putative OS=Theobroma cacao OX=3641 GN=TCM_026380 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17589-RA	Carg17589-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33881:SF1	SUBFAMILY NOT NAMED	coord: 24..146
None	No IPR available	PANTHER	PTHR33881	FAMILY NOT NAMED	coord: 24..146

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17589	Cla019817	Watermelon (97103) v1	carwmB0714
Carg17589	Csa2G011540	Cucumber (Chinese Long) v2	carcuB0735
Carg17589	ClCG02G016520	Watermelon (Charleston Gray)	carwcgB0692
Carg17589	CSPI02G03110	Wild cucumber (PI 183967)	carcpiB0751
Carg17589	Cucsa.133380	Cucumber (Gy14) v1	carcgyB0804
Carg17589	CmaCh12G011130	Cucurbita maxima (Rimu)	carcmaB1000
Carg17589	CmoCh12G011310	Cucurbita moschata (Rifu)	carcmoB0973
Carg17589	Lsi11G004600	Bottle gourd (USVL1VR-Ls)	carlsiB654
Carg17589	CsGy2G003220	Cucumber (Gy14) v2	carcgybB0713
Carg17589	CsaV3_2G004250	Cucumber (Chinese Long) v3	carcucB0754
Carg17589	Cla97C02G042300	Watermelon (97103) v2	carwmbB0746
Carg17589	Bhi06G001509	Wax gourd	carwgoB0841

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17589	Cucurbita pepo (Zucchini)	carcpeB1005
Carg17589	Cucurbita pepo (Zucchini)	carcpeB1006
Carg17589	Melon (DHL92) v3.5.1	carmeB0711
Carg17589	Melon (DHL92) v3.6.1	carmedB0724
Carg17589	Watermelon (97103) v2	carwmbB0747
Carg17589	Silver-seed gourd	carcarB325
Carg17589	Cucurbita maxima (Rimu)	carcmaB1001
Carg17589	Cucurbita moschata (Rifu)	carcmoB0974