Carg17568 (gene) Silver-seed gourd

Overview
NameCarg17568
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionvesicle-associated protein 2-2 isoform X2
LocationCucurbita_argyrosperma_scaffold_183 : 299343 .. 300511 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATCTTGGTGGTATGCATTTGAGATGGTTGAAATGATGCCTCTGAGATCCTTGTTTGAAACTTCCTTGTTTGAAAATTTGAAATTCTTAAAATCCCCGTTGTCTCGTGAAACCGACTTCAGAGACGATGAAGTCTTCTTAAAGATTGAGGTCTGCTATGATTATAAGAGGAGGATTGGATGAAGTTGTCTAGATTTGTTTGGGGGTGTGCTATCAACATAACAAAAGGATTAGGATATATTCGCTCGCTCGAGAAGTTAGAGGTTTGAATCCTGTTGTTTAACACAAAATATAGGGAAGGCGTAACAGCCCAAGCCCACCGCTAGCAAATATTGTTGTCTTTGGGTTTTCCTTTTTGACCTTCCCTTCGGGCCTTTCTCAAAGGTGTCTGCTAGAGAAGTTTCCACACTCTTATAAAGAATGCTTCGTTCTCCTCCCTAGAGGGGTGTCTGCTAGAGAGGTTTTCACAACCTTATAAAGAATGCTTCGTTCTCTTCCCTAGAGGGGCGTCTGCTAGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCCCTAGAGGGGCGTCTGCTAGAAAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCCCTAGAGGGGCGTCTGCTAGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCTCTAGAGGGGCGTCTGCTAGAGAGCTTTTCACACCCTTATAAACACCCTTATAAAGAAGGTTTCATTCTCCTCGAAAGAGGGGTAGCTTTTTAGTGGAGCCAAAAAGAAAAGCACTACTATTAGAAACTCATTCATCCTACCCATTGAATTATACTCGGAAACTCAGCTTTTGTATACTACAATTTCATACTTGCATTCAAGATTTCGTGACTCGATGTTTCATCTTGTATCTTCTCAGATGGGAATGAGTAGGCGAGGCAGGGCGAGCAATCGTGTCGGTTTTCCTCCTCTGTTTCTCTGTATGGTGGCGCTTATTTGCATTGTGTTCGGATACCTTTTGCGCTATTGAAGAACCGAAGGCGCTGATCGGGAGCGGTGAAGAGAGAGCGGAGAAGACATGTAAAGGAATTATCTTACTTTATGTAGATAGAATGGTAGCTCTAGGGATGTTGTGTGTTGTCAATAAGAATAAAGCCCCTCATTCA

mRNA sequence

ATGTTATCTTGGTGGTATGCATTTGAGATGGTTGAAATGATGCCTCTGAGATCCTTGTTTGAAACTTCCTTGTTTGAAAATTTGAAATTCTTAAAATCCCCGTTGTCTCGTGAAACCGACTTCAGAGACGATGAAGTCTTCTTAAAGATTGAGATGGGAATGAGTAGGCGAGGCAGGGCGAGCAATCGTGTCGGTTTTCCTCCTCTGTTTCTCTGTATGGTGGCGCTTATTTGCATTGTGTTCGGATACCTTTTGCGCTATTGAAGAACCGAAGGCGCTGATCGGGAGCGGTGAAGAGAGAGCGGAGAAGACATGTAAAGGAATTATCTTACTTTATGTAGATAGAATGGTAGCTCTAGGGATGTTGTGTGTTGTCAATAAGAATAAAGCCCCTCATTCA

Coding sequence (CDS)

ATGTTATCTTGGTGGTATGCATTTGAGATGGTTGAAATGATGCCTCTGAGATCCTTGTTTGAAACTTCCTTGTTTGAAAATTTGAAATTCTTAAAATCCCCGTTGTCTCGTGAAACCGACTTCAGAGACGATGAAGTCTTCTTAAAGATTGAGATGGGAATGAGTAGGCGAGGCAGGGCGAGCAATCGTGTCGGTTTTCCTCCTCTGTTTCTCTGTATGGTGGCGCTTATTTGCATTGTGTTCGGATACCTTTTGCGCTATTGA

Protein sequence

MLSWWYAFEMVEMMPLRSLFETSLFENLKFLKSPLSRETDFRDDEVFLKIEMGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY
Homology
[Close]
BLAST of Carg17568 vs. NCBI nr
Match: XP_022937988.1 (vesicle-associated protein 2-2-like [Cucurbita moschata] >XP_022937989.1 vesicle-associated protein 2-2-like [Cucurbita moschata])

HSP 1 Score: 79.0 bits (193), Expect = 9.1e-12
Identity = 44/57 (77.19%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 33  SPLSRETDFRDDEVFLKIE--MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           S LS E  F   EV    E  MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY
Sbjct: 382 SRLSEERRFSAQEVKNLKENLMGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 438

[Close]
BLAST of Carg17568 vs. NCBI nr
Match: XP_022965742.1 (vesicle-associated protein 2-2-like [Cucurbita maxima] >XP_022965743.1 vesicle-associated protein 2-2-like [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 9.1e-12
Identity = 44/57 (77.19%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 33  SPLSRETDFRDDEVFLKIE--MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           S LS E  F   EV    E  MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY
Sbjct: 382 SRLSEERRFSAQEVKNLKENLMGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 438

[Close]
BLAST of Carg17568 vs. NCBI nr
Match: XP_023538184.1 (vesicle-associated protein 2-2-like [Cucurbita pepo subsp. pepo] >XP_023538186.1 vesicle-associated protein 2-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 9.1e-12
Identity = 44/57 (77.19%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 33  SPLSRETDFRDDEVFLKIE--MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           S LS E  F   EV    E  MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY
Sbjct: 382 SRLSEERRFSAQEVKNLKENLMGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 438

[Close]
BLAST of Carg17568 vs. NCBI nr
Match: XP_004139205.1 (PREDICTED: vesicle-associated protein 2-2 isoform X2 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 8.8e-07
Identity = 27/34 (79.41%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 54  MSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           +SRRGRASN+VGFPPLF+CMVALICIVFG++L +
Sbjct: 361 LSRRGRASNQVGFPPLFICMVALICIVFGFVLHH 394

[Close]
BLAST of Carg17568 vs. NCBI nr
Match: XP_011648789.1 (PREDICTED: vesicle-associated protein 2-2 isoform X1 [Cucumis sativus] >XP_011648790.1 PREDICTED: vesicle-associated protein 2-2 isoform X1 [Cucumis sativus] >KGN60849.1 hypothetical protein Csa_2G013300 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 8.8e-07
Identity = 27/34 (79.41%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 54  MSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           +SRRGRASN+VGFPPLF+CMVALICIVFG++L +
Sbjct: 396 LSRRGRASNQVGFPPLFICMVALICIVFGFVLHH 429

[Close]
BLAST of Carg17568 vs. TrEMBL
Match: tr|A0A0A0LIH5|A0A0A0LIH5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013300 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-07
Identity = 27/34 (79.41%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 54  MSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           +SRRGRASN+VGFPPLF+CMVALICIVFG++L +
Sbjct: 396 LSRRGRASNQVGFPPLFICMVALICIVFGFVLHH 429

[Close]
BLAST of Carg17568 vs. TrEMBL
Match: tr|A0A1S3C0N6|A0A1S3C0N6_CUCME (vesicle-associated protein 2-2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495652 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.4e-06
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 54  MSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           +SRRGR SN+VGFPPLF+CMVALICIV G++L +
Sbjct: 361 LSRRGRTSNQVGFPPLFICMVALICIVLGFVLHH 394

[Close]
BLAST of Carg17568 vs. TrEMBL
Match: tr|A0A1S3C2B8|A0A1S3C2B8_CUCME (vesicle-associated protein 2-2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495652 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.4e-06
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 54  MSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           +SRRGR SN+VGFPPLF+CMVALICIV G++L +
Sbjct: 396 LSRRGRTSNQVGFPPLFICMVALICIVLGFVLHH 429

The following BLAST results are available for this feature:
BLAST of Carg17568 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937988.19.1e-1277.19vesicle-associated protein 2-2-like [Cucurbita moschata] >XP_022937989.1 vesicle... [more]
XP_022965742.19.1e-1277.19vesicle-associated protein 2-2-like [Cucurbita maxima] >XP_022965743.1 vesicle-a... [more]
XP_023538184.19.1e-1277.19vesicle-associated protein 2-2-like [Cucurbita pepo subsp. pepo] >XP_023538186.1... [more]
XP_004139205.18.8e-0779.41PREDICTED: vesicle-associated protein 2-2 isoform X2 [Cucumis sativus][more]
XP_011648789.18.8e-0779.41PREDICTED: vesicle-associated protein 2-2 isoform X1 [Cucumis sativus] >XP_01164... [more]
BLAST of Carg17568 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg17568 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg17568 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIH5|A0A0A0LIH5_CUCSA5.8e-0779.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013300 PE=4 SV=1[more]
tr|A0A1S3C0N6|A0A1S3C0N6_CUCME8.4e-0673.53vesicle-associated protein 2-2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349565... [more]
tr|A0A1S3C2B8|A0A1S3C2B8_CUCME8.4e-0673.53vesicle-associated protein 2-2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349565... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17568-RACarg17568-RAmRNA