Carg17529 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17529
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	cell cycle checkpoint control protein family
Location	Cucurbita_argyrosperma_scaffold_183 : 37296 .. 39537 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTAATCTGAGTGGAAATGCTCTCAAGACCTTCGCTCGCTCAGTCACATGCCTTGCTCGCATCGGAAACGAGCTCGTCATCCAAGCTTCTCCATCGCAGGTACTCGATATTCTCCCTTTTTCCTCGAGTTCTGCCTCCCTAGAATAGTTTAATCAAAGATTCTCACATCGTTTGCATCTGAAGAAACAGTAAGCTTAATTTTAGTGCTAAATTTTGATGAGTTCAAAATTAGGCGGAGATATTTGTATTGCGTAAGCGATTCTGGAAACAGTACATTGTTCGGTGAATTTATATCCAATTTATTGACCATTTATGCATGTAGAACGTGGTTAGCAACTTTGAGCGAAATTAACTTCTATATAGAAATGCAAATTTTCCTCTGCTCTTTGTCTGGAACCAAAATTGAGTGAACTTTGTTATGTCAATTTGTAAAATAAGATGGAAATAATGTAGCTAAAACCTTGAGGCTTGCTTAGCTTGTTGAGTTGTTTTGGTATGGAAATTATATGGAAGGATCAATTTTAAAGCTGATTGTTTTATTTTCAAGTTCAGTTGGCTTTTTACACCCTCAATGCATCACGGTCTGCCTATCAAGCTATAACCTTTGAGCCTGGGTTCTTTGATACTTATGCCATTTCTGGTAATCAAGTGCAATGCAGTGTTCTTTTGAAGGTATGCATGATCTTGTGCTGTATTGCATTCACTAACAGTACCTTAGCACCCATGCTTACTTATTATGACATTCCATGTCAGGCTGTCTGCTCTGTTCTTAGAACATCCATTGCTAGCGTAGACCATCTGAGAGTGCGGTTACCAGATACTTATGCATTGAAAATACAATGGAGTTTGGAATGCTTCAATGGTCAGCTGCCCTTTTATAGTTTATACGAGTACTCACGTTTATCTAAAAATCATGTTTAAATGATCTATGTTCATTGATACAGATGCCTACTAATTAAGATTGTCTCACAATGACGACTAACTTACATGGTTCCAGTATGTTGACATTGGTTGATTATATATCCTCTGAGAACTACAAATAAAGCAAATCTAATATTTTTAGTGTCATGTACACTAAGCATACAACATCACTGCATCGTGTGCTGCTATTATGCTGGTAGTTATATTCAAAGATAGAGGGGCAATAAATGAAACCTTTGGTATATATATATATATCTACAACAATGTCCAATAAGCGCAACAAAGTGATGCAAAGGTGAAAATGCACCATGATGATGTCTGTTAATGCGTTCCATGTTTGCAATTCATCCAGTTATCAAGGGTATAGATTACCCTAAACTTGTTAAAATTGGCCTACATAAAAGTGATGCAAGAAGGATCATTGTTCTTACGAAATGATTTTGTGTTTTCAATACTATATAGTTTTATACTATGATAAATTTTCCTTTAAATACATCAATCTTATCTGGTTTGCAGGAATAAAGAAAACATACTGCATTTCTTGCAACGTTGAGCCAGACATACAGCACTTGTCTCTTGACAGGAGACAGTTCCCAAGTGACTTAGTTGTGAGACCTCGAGATCTGAATCGATTACTATCTAATTTTCAGTCATCCTTGCAGGAGATCACTGTTATTGCAACAGAACCAACTTCCTTACCTTCTGAAGCTGCAATTGAGATTGAAGGAAAGGCTGTTGAGCTTCGAAGTTATATAGACCCAACCAAAGGTGATAATGATATGTACAAGCCTAGATTAATTAATATATTTCACCTTAAAATTTTCCCCCCAATCAACTCCTTAGAGATGTTGACTCTTGAAAATTCGTTACATTCAATGGATCTACCAAAATATAGGTGATGCTTCATTCTTTAACTGCAGACAATGACGCGCTGCTTCATACTCAACTCTGGATAGATCCTATGGAAGAGTTTGTCCATTATTCTCACAGTGGAGATCCGGTAGACATAACATTTGGAGTAAAAGAATTGAAGGTACTTGTTGGACCTCACTTGTGGATTAATTCAATTTTTCTTTTTTTTTTTTTTTTTTTTTGGAATGCTGCTCTTCTGGTATTACGACCAACATTTTCTTCTATATGCTTTGTGGTGAGTTGATATTATTGTTGTTATTATTATTTTTACAATCTTGGGCTATATGTAGGAAGCACAATTTAATTTAAAAGCTTATCTTTTTTGATATTCATGGTTGAAATCTTTTCTTAAAGCTTACTTTCATCATCATTTCAGGCATTTCTTTCTTTCTGCGAGGGCTGA

mRNA sequence

ATGGAGTTTAATCTGAGTGGAAATGCTCTCAAGACCTTCGCTCGCTCAGTCACATGCCTTGCTCGCATCGGAAACGAGCTCGTCATCCAAGCTTCTCCATCGCAGTTGGCTTTTTACACCCTCAATGCATCACGGTCTGCCTATCAAGCTATAACCTTTGAGCCTGGGTTCTTTGATACTTATGCCATTTCTGGTAATCAAGTGCAATGCAGTGTTCTTTTGAAGGCTGTCTGCTCTGTTCTTAGAACATCCATTGCTAGCGTAGACCATCTGAGAGTGCGGTTACCAGATACTTATGCATTGAAAATACAATGGAGTTTGGAATGCTTCAATGGAATAAAGAAAACATACTGCATTTCTTGCAACGTTGAGCCAGACATACAGCACTTGTCTCTTGACAGGAGACAGTTCCCAAGTGACTTAGTTGTGAGACCTCGAGATCTGAATCGATTACTATCTAATTTTCAGTCATCCTTGCAGGAGATCACTGTTATTGCAACAGAACCAACTTCCTTACCTTCTGAAGCTGCAATTGAGATTGAAGGAAAGGCTGTTGAGCTTCGAAGTTATATAGACCCAACCAAAGACAATGACGCGCTGCTTCATACTCAACTCTGGATAGATCCTATGGAAGAGTTTGTCCATTATTCTCACAGTGGAGATCCGGTAGACATAACATTTGGAGTAAAAGAATTGAAGGCATTTCTTTCTTTCTGCGAGGGCTGA

Coding sequence (CDS)

ATGGAGTTTAATCTGAGTGGAAATGCTCTCAAGACCTTCGCTCGCTCAGTCACATGCCTTGCTCGCATCGGAAACGAGCTCGTCATCCAAGCTTCTCCATCGCAGTTGGCTTTTTACACCCTCAATGCATCACGGTCTGCCTATCAAGCTATAACCTTTGAGCCTGGGTTCTTTGATACTTATGCCATTTCTGGTAATCAAGTGCAATGCAGTGTTCTTTTGAAGGCTGTCTGCTCTGTTCTTAGAACATCCATTGCTAGCGTAGACCATCTGAGAGTGCGGTTACCAGATACTTATGCATTGAAAATACAATGGAGTTTGGAATGCTTCAATGGAATAAAGAAAACATACTGCATTTCTTGCAACGTTGAGCCAGACATACAGCACTTGTCTCTTGACAGGAGACAGTTCCCAAGTGACTTAGTTGTGAGACCTCGAGATCTGAATCGATTACTATCTAATTTTCAGTCATCCTTGCAGGAGATCACTGTTATTGCAACAGAACCAACTTCCTTACCTTCTGAAGCTGCAATTGAGATTGAAGGAAAGGCTGTTGAGCTTCGAAGTTATATAGACCCAACCAAAGACAATGACGCGCTGCTTCATACTCAACTCTGGATAGATCCTATGGAAGAGTTTGTCCATTATTCTCACAGTGGAGATCCGGTAGACATAACATTTGGAGTAAAAGAATTGAAGGCATTTCTTTCTTTCTGCGAGGGCTGA

Protein sequence

MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDTYAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCISCNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEIEGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCEG

Homology

[Close]

BLAST of Carg17529 vs. NCBI nr
Match: XP_023537430.1 (cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537431.1 cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537432.1 cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 482.6 bits (1241), Expect = 7.6e-133
Identity = 240/241 (99.59%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60
           MEF+LSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT
Sbjct: 1   MEFSLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60

Query: 61  YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS 120
           YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS
Sbjct: 61  YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS 120

Query: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI 180
           CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI
Sbjct: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI 180

Query: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240
           EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE
Sbjct: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240

Query: 241 G 242
           G
Sbjct: 241 G 241

[Close]

BLAST of Carg17529 vs. NCBI nr
Match: XP_022937528.1 (cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita moschata] >XP_022937529.1 cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita moschata] >XP_022937530.1 cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita moschata] >XP_022937531.1 cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita moschata] >XP_022937532.1 cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita moschata] >XP_022937533.1 cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita moschata])

HSP 1 Score: 481.9 bits (1239), Expect = 1.3e-132
Identity = 239/241 (99.17%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60
           MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT
Sbjct: 1   MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60

Query: 61  YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS 120
           YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRV+LPDTYALKIQWSLECFNGIKKTYCIS
Sbjct: 61  YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVQLPDTYALKIQWSLECFNGIKKTYCIS 120

Query: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI 180
           CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI
Sbjct: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI 180

Query: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240
           EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGV+ELKAFLSFCE
Sbjct: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVRELKAFLSFCE 240

Query: 241 G 242
           G
Sbjct: 241 G 241

[Close]

BLAST of Carg17529 vs. NCBI nr
Match: XP_022965728.1 (cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita maxima] >XP_022965729.1 cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita maxima])

HSP 1 Score: 477.6 bits (1228), Expect = 2.4e-131
Identity = 238/241 (98.76%), Postives = 240/241 (99.59%), Query Frame = 0


Query: 1   MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60
           MEF+LSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT
Sbjct: 1   MEFSLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60

Query: 61  YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS 120
           YAISGNQVQCSVLLKAVCSVLRTS+ASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS
Sbjct: 61  YAISGNQVQCSVLLKAVCSVLRTSMASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS 120

Query: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI 180
            NVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI
Sbjct: 121 SNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI 180

Query: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240
           EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE
Sbjct: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240

Query: 241 G 242
           G
Sbjct: 241 G 241

[Close]

BLAST of Carg17529 vs. NCBI nr
Match: XP_022150828.1 (cell cycle checkpoint control protein RAD9A isoform X2 [Momordica charantia])

HSP 1 Score: 457.2 bits (1175), Expect = 3.4e-125
Identity = 224/240 (93.33%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60
           MEF+LSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFD 
Sbjct: 1   MEFSLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDA 60

Query: 61  YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS 120
           Y +SGNQVQCSVLLKAVCSVLRT IAS+DHLRV+LPD  +LK+QWSL+CFNG+ KTYCIS
Sbjct: 61  YVVSGNQVQCSVLLKAVCSVLRTPIASIDHLRVQLPDPDSLKVQWSLKCFNGMNKTYCIS 120

Query: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI 180
           CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEIT+IATEPTSLPSEAA EI
Sbjct: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITIIATEPTSLPSEAASEI 180

Query: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240
           EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE
Sbjct: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240

[Close]

BLAST of Carg17529 vs. NCBI nr
Match: XP_022150829.1 (cell cycle checkpoint control protein RAD9A isoform X3 [Momordica charantia])

HSP 1 Score: 457.2 bits (1175), Expect = 3.4e-125
Identity = 224/240 (93.33%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60
           MEF+LSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFD 
Sbjct: 1   MEFSLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDA 60

Query: 61  YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS 120
           Y +SGNQVQCSVLLKAVCSVLRT IAS+DHLRV+LPD  +LK+QWSL+CFNG+ KTYCIS
Sbjct: 61  YVVSGNQVQCSVLLKAVCSVLRTPIASIDHLRVQLPDPDSLKVQWSLKCFNGMNKTYCIS 120

Query: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI 180
           CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEIT+IATEPTSLPSEAA EI
Sbjct: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITIIATEPTSLPSEAASEI 180

Query: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240
           EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE
Sbjct: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240

[Close]

BLAST of Carg17529 vs. TAIR10
Match: AT3G05480.3 (cell cycle checkpoint control protein family)

HSP 1 Score: 355.1 bits (910), Expect = 3.3e-98
Identity = 172/258 (66.67%), Postives = 208/258 (80.62%), Query Frame = 0


Query: 1   MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60
           ME ++SGNALKT +RS+ CLAR+GNELV+QASP+QLA +TLNASRSAYQ ITF+  FFD 
Sbjct: 1   MELSISGNALKTLSRSIICLARVGNELVVQASPTQLALHTLNASRSAYQCITFQSSFFDV 60

Query: 61  YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECF---------- 120
           Y +SG Q   SVLLKAVCSVLRT +AS+DH+ V+LPD  A K++W+L+C+          
Sbjct: 61  YTVSGPQAHFSVLLKAVCSVLRTPLASIDHMSVQLPDHDASKVKWTLQCYSAVLCKNLDV 120

Query: 121 -------NGIKKTYCISCNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEIT 180
                  N +KKTY I+CNVEPDIQHLSLDR +FPS LV+ PR+L++LL NFQSSLQEIT
Sbjct: 121 ACFRPVHNSMKKTYWITCNVEPDIQHLSLDRGRFPSTLVMHPRNLSKLLGNFQSSLQEIT 180

Query: 181 VIATEPTSLPSEAAIEIEGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPV 240
           +IAT+ TS PS+AA EI GKAVE RSY+DPTKD D+LLHTQLWIDP EEF+ Y+H+GDPV
Sbjct: 181 IIATDQTSFPSDAASEIGGKAVEFRSYVDPTKDGDSLLHTQLWIDPSEEFLQYTHAGDPV 240

Query: 241 DITFGVKELKAFLSFCEG 242
           DITF +KELKAFL+FCEG
Sbjct: 241 DITFSLKELKAFLAFCEG 258

[Close]

BLAST of Carg17529 vs. Swiss-Prot
Match: sp|Q6WBX8|RAD9B_HUMAN (Cell cycle checkpoint control protein RAD9B OS=Homo sapiens OX=9606 GN=RAD9B PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-12
Identity = 67/250 (26.80%), Postives = 121/250 (48.40%), Query Frame = 0


Query: 5   LSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDTY--- 64
           +SG+ +K F ++V  L+RI +E  +  S   LA   +N+SRSAY  + F P FF  Y   
Sbjct: 6   MSGSQVKVFGKAVQALSRISDEFWLDPSKKGLALRCVNSSRSAYGCVLFSPVFFQHYQWS 65

Query: 65  ---AISGNQ------VQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECF-- 124
               +S N+      ++C + +K++  + R   +   ++      T + K +  ++ F  
Sbjct: 66  ALVKMSENELDTTLHLKCKLGMKSILPIFRCLNSLERNIEKCRIFTRSDKCKVVIQFFYR 125

Query: 125 NGIKKTYCISCNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPT 184
           +GIK+T+ I C  E     +  D+    + L+++PR L   +  F SS +E+T +A  P 
Sbjct: 126 HGIKRTHNI-CFQESQPLQVIFDKNVCTNTLMIQPRLLADAIVLFTSSQEEVT-LAVTPL 185

Query: 185 SLPSEAAIEIEGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVK 241
           +               L+S  + + D    +H+++++   +EF  +   G   +ITF  K
Sbjct: 186 NFC-------------LKSSNEESMDLSNAVHSEMFVG-SDEF-DFFQIGMDTEITFCFK 238

[Close]

BLAST of Carg17529 vs. Swiss-Prot
Match: sp|Q5E9X8|RAD9B_BOVIN (Cell cycle checkpoint control protein RAD9B OS=Bos taurus OX=9913 GN=RAD9B PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-11
Identity = 60/247 (24.29%), Postives = 115/247 (46.56%), Query Frame = 0


Query: 7   GNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDTYAISGN 66
           G  ++ F +++  L+R+ +EL +  S   LA  ++N+ RSAY  + F P FF  Y  S +
Sbjct: 26  GQVVEVFGKAIQALSRVSDELWLDPSEKGLALRSVNSCRSAYGCVLFSPVFFQHYQWSAS 85

Query: 67  ----------QVQCSVLLKAVCSVLR---TSIASVDHLRVRLPDTYALKIQWSLECFNGI 126
                      + C + +K++  + R   +   +V+  ++    +   K+     C +GI
Sbjct: 86  VKMNDTDIILNLNCRLGMKSILPIFRCLNSLEKNVEKCKI-FTRSDKCKVVIQFFCRHGI 145

Query: 127 KKTYCISCNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLP 186
           KK + +       +Q +   +    + LV++PR L   +  F SS +E+T+  T     P
Sbjct: 146 KKIHNVCFQGSRPLQ-VIFQKNMCANTLVIQPRVLAEAIVLFTSSQEEVTLAVT-----P 205

Query: 187 SEAAIEIEGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELK 241
            +  I         +S  + + D    +++++++ P +EF  +   G   +ITF  KELK
Sbjct: 206 LKVCI---------KSSNEESMDLTDSVYSEMFVGP-DEF-DFFQIGIDTEITFCFKELK 254

[Close]

BLAST of Carg17529 vs. Swiss-Prot
Match: sp|P26306|RAD9_SCHPO (DNA repair protein rad9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rad9 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.3e-06
Identity = 51/238 (21.43%), Postives = 93/238 (39.08%), Query Frame = 0


Query: 1   MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60
           MEF +S   L+  AR  T L+RI + +  + + +Q+    LN+SRS +  +T +  FFD 
Sbjct: 1   MEFTVSNVNLRDLARIFTNLSRIDDAVNWEINKNQIEITCLNSSRSGFSMVTLKKAFFDK 60

Query: 61  YAISGNQVQCSVLL----------KAVCSVLRTSI------------------------- 120
           Y    + V  + L+          K + SV R  I                         
Sbjct: 61  YIFQPDSVLLTGLMTPTIRIRTQVKPILSVFRNKIFDFIPTVVTTNSKNGYGSESASRKD 120

Query: 121 ASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCISCNVEPDIQHLSLDRRQFPSDLVVRP 180
             V+++++ +      +I +   C +G+ KTY IS   +    H   D+    ++  +  
Sbjct: 121 VIVENVQISISTGSECRIIFKFLCKHGVIKTYKISYE-QTQTLHAVFDKSLSHNNFQINS 180

Query: 181 RDLNRLLSNFQSSLQEITVIATEPTSL-----------------PSEAAIEIEGKAVE 187
           + L  L  +F    +E+T+   +   L                 P++  + I+GK  E
Sbjct: 181 KILKDLTEHFGQRTEELTIQPLQERVLLTSFTEEVVHNRDILKQPTQTTVSIDGKEFE 237

[Close]

BLAST of Carg17529 vs. TrEMBL
Match: tr|A0A0A0LIU7|A0A0A0LIU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G031130 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 2.5e-124
Identity = 224/241 (92.95%), Postives = 233/241 (96.68%), Query Frame = 0


Query: 1   MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60
           MEF+LSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFE GFFD 
Sbjct: 1   MEFSLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFETGFFDH 60

Query: 61  YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS 120
           YA+SGNQVQCSVLLKAVCSVLRT I S+DHL+V+LPD  ALK++WSLECFNG+KKTY IS
Sbjct: 61  YAVSGNQVQCSVLLKAVCSVLRTPIVSIDHLKVQLPDPDALKVRWSLECFNGMKKTYFIS 120

Query: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI 180
           CN+EPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAA EI
Sbjct: 121 CNIEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAASEI 180

Query: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240
           EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE
Sbjct: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240

Query: 241 G 242
           G
Sbjct: 241 G 241

[Close]

BLAST of Carg17529 vs. TrEMBL
Match: tr|A0A1S3BY80|A0A1S3BY80_CUCME (cell cycle checkpoint control protein RAD9A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494672 PE=3 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 7.3e-124
Identity = 224/241 (92.95%), Postives = 233/241 (96.68%), Query Frame = 0


Query: 1   MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60
           MEF+LSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAY AITFE GFFD 
Sbjct: 1   MEFSLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYLAITFETGFFDN 60

Query: 61  YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS 120
           YAISGNQVQCSVLLKAVCSVLRT IAS+DHL+V+LPD  ALK++WSLECFNG+KKTY IS
Sbjct: 61  YAISGNQVQCSVLLKAVCSVLRTPIASIDHLKVQLPDPDALKVRWSLECFNGMKKTYFIS 120

Query: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI 180
           CN+EPDIQHLSLDRRQFPS+LVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAA EI
Sbjct: 121 CNIEPDIQHLSLDRRQFPSELVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAASEI 180

Query: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240
           EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE
Sbjct: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240

Query: 241 G 242
           G
Sbjct: 241 G 241

[Close]

BLAST of Carg17529 vs. TrEMBL
Match: tr|A0A1Q3CTI4|A0A1Q3CTI4_CEPFO (Rad9 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_26932 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 1.2e-110
Identity = 192/241 (79.67%), Postives = 221/241 (91.70%), Query Frame = 0


Query: 1   MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60
           ME ++SGNALKTFARS+TCL+R+GNEL IQASPSQLAF+TLN+SRSAYQ+ITF+P FFD 
Sbjct: 36  MELSISGNALKTFARSITCLSRVGNELAIQASPSQLAFHTLNSSRSAYQSITFKPSFFDV 95

Query: 61  YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS 120
           Y ISG QVQCSVLLKA+CSVLRT + S+DHL V+LPD  A K+QW+LEC+NG++K Y I+
Sbjct: 96  YTISGAQVQCSVLLKAICSVLRTPVGSIDHLTVQLPDLDASKVQWTLECYNGVRKAYWIT 155

Query: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI 180
           CNVEPDIQHLSLDRR+FPS+ VVRPRDLNRLLSNFQSSLQEIT+IATEPTSLPS+AA EI
Sbjct: 156 CNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQEITIIATEPTSLPSDAASEI 215

Query: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240
            GKAVELRSYIDPTKDND+ LHTQLWIDPMEEF+ Y+H+GDP+D+TF VKELKAFLSFCE
Sbjct: 216 GGKAVELRSYIDPTKDNDSSLHTQLWIDPMEEFLQYTHTGDPIDVTFAVKELKAFLSFCE 275

Query: 241 G 242
           G
Sbjct: 276 G 276

[Close]

BLAST of Carg17529 vs. TrEMBL
Match: tr|D7U9W0|D7U9W0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0060g02120 PE=3 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 3.0e-109
Identity = 196/241 (81.33%), Postives = 220/241 (91.29%), Query Frame = 0


Query: 1   MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60
           ME++LSGNALKTFARSVTCLAR+GNEL IQASPSQLAF+T+N+SRSAYQ+ITF+P FFD 
Sbjct: 1   MEWSLSGNALKTFARSVTCLARVGNELAIQASPSQLAFHTINSSRSAYQSITFKPDFFDL 60

Query: 61  YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS 120
           Y ISG QVQCSVLLKA+C+VLRT IAS+DHL V+LPD  A K+Q +L C+NG+KK Y I+
Sbjct: 61  YTISGAQVQCSVLLKAICAVLRTPIASIDHLSVQLPDPDASKLQLTLNCYNGVKKAYWIT 120

Query: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI 180
           CNVEPDIQHLSLDR +FPS+ VVRPRDLNRLL+NFQSSLQEIT+IATEPTSLPS+AA EI
Sbjct: 121 CNVEPDIQHLSLDRTRFPSNFVVRPRDLNRLLANFQSSLQEITIIATEPTSLPSDAAGEI 180

Query: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240
            GKAVELRSYIDPTKDND+ LHTQLWIDPMEEFV Y HSGDPVD+TFGVKELKAFLSFCE
Sbjct: 181 GGKAVELRSYIDPTKDNDSSLHTQLWIDPMEEFVQYVHSGDPVDVTFGVKELKAFLSFCE 240

Query: 241 G 242
           G
Sbjct: 241 G 241

[Close]

BLAST of Carg17529 vs. TrEMBL
Match: tr|W9SGM3|W9SGM3_9ROSA (Cell cycle checkpoint control protein RAD9A OS=Morus notabilis OX=981085 GN=L484_010824 PE=3 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 5.6e-108
Identity = 192/241 (79.67%), Postives = 220/241 (91.29%), Query Frame = 0


Query: 1   MEFNLSGNALKTFARSVTCLARIGNELVIQASPSQLAFYTLNASRSAYQAITFEPGFFDT 60
           ME +LSGNALKTFARSVTCLAR+GNEL IQASPSQLA +TLN+SRSA+Q+ITF+ GFFD 
Sbjct: 1   MELSLSGNALKTFARSVTCLARVGNELAIQASPSQLALHTLNSSRSAFQSITFKSGFFDV 60

Query: 61  YAISGNQVQCSVLLKAVCSVLRTSIASVDHLRVRLPDTYALKIQWSLECFNGIKKTYCIS 120
           Y I+GNQV+CSVLLKAVCSVLRT IASVD+LR++LP   A K+QW+LECFNG++K Y I+
Sbjct: 61  YTITGNQVECSVLLKAVCSVLRTPIASVDNLRIKLPYPDASKMQWTLECFNGMRKAYWIT 120

Query: 121 CNVEPDIQHLSLDRRQFPSDLVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSEAAIEI 180
           CNVEP+IQHLSLDRR+FPS+ +VRPRDLNRLL+NFQSSLQEIT+IATEP SLPS+ A EI
Sbjct: 121 CNVEPNIQHLSLDRRRFPSNFLVRPRDLNRLLANFQSSLQEITIIATEPNSLPSDVASEI 180

Query: 181 EGKAVELRSYIDPTKDNDALLHTQLWIDPMEEFVHYSHSGDPVDITFGVKELKAFLSFCE 240
            GKAVELRSYIDPTKDND  LHTQLWIDPMEEF+ Y+H+GDPVD+TFGVKELKAFLSFCE
Sbjct: 181 GGKAVELRSYIDPTKDNDLSLHTQLWIDPMEEFLQYTHTGDPVDVTFGVKELKAFLSFCE 240

Query: 241 G 242
           G
Sbjct: 241 G 241

The following BLAST results are available for this feature:

BLAST of Carg17529 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537430.1	7.6e-133	99.59	cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita pepo subsp. pe...	[more]
XP_022937528.1	1.3e-132	99.17	cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita moschata] >XP_...	[more]
XP_022965728.1	2.4e-131	98.76	cell cycle checkpoint control protein RAD9A isoform X1 [Cucurbita maxima] >XP_02...	[more]
XP_022150828.1	3.4e-125	93.33	cell cycle checkpoint control protein RAD9A isoform X2 [Momordica charantia]	[more]
XP_022150829.1	3.4e-125	93.33	cell cycle checkpoint control protein RAD9A isoform X3 [Momordica charantia]	[more]

BLAST of Carg17529 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05480.3	3.3e-98	66.67	cell cycle checkpoint control protein family	[more]

BLAST of Carg17529 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6WBX8\|RAD9B_HUMAN	1.2e-12	26.80	Cell cycle checkpoint control protein RAD9B OS=Homo sapiens OX=9606 GN=RAD9B PE=...	[more]
sp\|Q5E9X8\|RAD9B_BOVIN	2.9e-11	24.29	Cell cycle checkpoint control protein RAD9B OS=Bos taurus OX=9913 GN=RAD9B PE=2 ...	[more]
sp\|P26306\|RAD9_SCHPO	6.3e-06	21.43	DNA repair protein rad9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) O...	[more]

BLAST of Carg17529 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIU7\|A0A0A0LIU7_CUCSA	2.5e-124	92.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G031130 PE=4 SV=1	[more]
tr\|A0A1S3BY80\|A0A1S3BY80_CUCME	7.3e-124	92.95	cell cycle checkpoint control protein RAD9A isoform X1 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A1Q3CTI4\|A0A1Q3CTI4_CEPFO	1.2e-110	79.67	Rad9 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=...	[more]
tr\|D7U9W0\|D7U9W0_VITVI	3.0e-109	81.33	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0060g02120 PE=3 SV=...	[more]
tr\|W9SGM3\|W9SGM3_9ROSA	5.6e-108	79.67	Cell cycle checkpoint control protein RAD9A OS=Morus notabilis OX=981085 GN=L484...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0030896	checkpoint clamp complex

Vocabulary: **Biological Process**
Term	Definition
GO:0000077	DNA damage checkpoint

Vocabulary: **INTERPRO**
Term	Definition
IPR007268	Rad9/Ddc1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000077	DNA damage checkpoint
cellular_component	GO:0030896	checkpoint clamp complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17529-RA	Carg17529-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007268	Rad9/Ddc1	PFAM	PF04139	Rad9	coord: 13..240 e-value: 4.4E-60 score: 203.1
IPR007268	Rad9/Ddc1	PANTHER	PTHR15237	DNA REPAIR PROTEIN RAD9	coord: 1..240
None	No IPR available	GENE3D	G3DSA:3.70.10.10		coord: 2..241 e-value: 2.9E-60 score: 205.7
None	No IPR available	PANTHER	PTHR15237:SF0	RAD9, ISOFORM B	coord: 1..240
None	No IPR available	SUPERFAMILY	SSF55979	DNA clamp	coord: 6..120

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17529	Cla019923	Watermelon (97103) v1	carwmB0714
Carg17529	Csa2G031130	Cucumber (Chinese Long) v2	carcuB0735
Carg17529	ClCG02G015450	Watermelon (Charleston Gray)	carwcgB0692
Carg17529	CSPI02G04280	Wild cucumber (PI 183967)	carcpiB0751
Carg17529	Cucsa.091100	Cucumber (Gy14) v1	carcgyB0803
Carg17529	CmaCh12G010610	Cucurbita maxima (Rimu)	carcmaB1000
Carg17529	CmoCh12G010740	Cucurbita moschata (Rifu)	carcmoB0973
Carg17529	Lsi11G005860	Bottle gourd (USVL1VR-Ls)	carlsiB654
Carg17529	Cp4.1LG07g08980	Cucurbita pepo (Zucchini)	carcpeB1006
Carg17529	CsGy2G004390	Cucumber (Gy14) v2	carcgybB0713
Carg17529	MELO3C031536.2	Melon (DHL92) v3.6.1	carmedB0724
Carg17529	CsaV3_2G006620	Cucumber (Chinese Long) v3	carcucB0754
Carg17529	Cla97C02G041220	Watermelon (97103) v2	carwmbB0746
Carg17529	Bhi06G001291	Wax gourd	carwgoB0842

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None