Carg17437 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17437
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	AT-hook motif nuclear-localized protein
Location	Cucurbita_argyrosperma_scaffold_084 : 87864 .. 92138 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCCAATGACAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAAGTCCCACCACATCGCCGACCAATGGCCGTCTACCCTCCACCCACCACCTCTCCTCCGCCGACGCCACCACCCATGTCCTTTACCCTCACTCGGTTCCCTCCGCCGCCGTCTCCTCCTCTCCTCTCGAGCCCGGTCGCCGGAAGAGAGGTCGCCCGCGGAAGTACGGCACGCCGGAGGAGGCTTTAGCGGCTAAGAAAGCTGCTACGGCGTCGTCTCACTCTTCCTCCAAGGCCAAGAAGGACCTCGTTTCTTCCTCTTCTCTTAATGCCGTTTCCGCTTCTTCGAAGAAATCTCAGTTGGCTGCACTTGGTGGGTTGTCGTGTTGGAATTTGTTGTTAATTTCTTTTCTCTTGTTGGGAGTTTTGGGGATTTTTCTAGGGTTCTGGAATTCGTTGTGGTTTTGGGGATTTCTGGGTTTTGGAATTGGGTTTTCTTTGTTTTAACCCCAAATCTCAAAAGCCCTTAATTCCCTTTTGGTCTTTTAGCAAAAGATTTAAAGAGATGCTTTACCCTAATTATTCAATTTTGTATGGATGCTTGTAATGGTTTCATGTTCTAAAATAACATGTTTCCTGTCTTGGCAATTGTTTCTTTCTTTTTTTATTTTCATTTACTTTTCGTTTTTGTTTCACTTTTGACTATGTGCTCGAATACTTACTTGGAGTGTATTTTTCTCACTGGACATGTAGGTAATGCAGGCCAAGGTTTTGCGCCACAGGTTATTGATGTGGCAGCTGGTGAGGTAATGCATTCTCCATAGTTTCCAAAGATTTGATTCCATTTATACTGATGTACTTGGAACTGCATGTGATGACGTGCAGGCATTTGCATAAACGCATACAATGATATAGCTAGAAATTGTGGGTCATATACAATTAATGCATTTGAAATGCTAGCTTTAAAGAATTAGCAAACTAAGTCACCACTTCTCAATATGGGGCATAACCTATGCTGTCCTGGTATTGATATATCATCTAGTATGATGGTGCTGCGATAGGACAGCAAGACCATTAAGGATCTCATAAAAACTTCTATGATCTTGAATGCCCTTTTCTGTTGAATTCTAGTTTGTATCTGGGTTCCGAGTTTTTAAAATGTATGGTTATAGTCGATAGCTTCTTAGTTTAGTTTCCTGAGTCTTTTCTTTCAAAATAGTTTATGTTCTAGTAAACTACAGACTTGTGAGATCCCACGTCAGTTAGGGAGGAGAACGAAACATTTTTTATAAGGGTGTGGAAACCTCTCACTAGTTTACAACTTTTAAAAACCTTGAGGAAAAGCCCGAAAGGGAAAGCCCAAAGTGGACAATATCTGCTAGCGGTGGGCTTGGGCTATTACAAATGGTACAAGAGCCGGACACCGGGTGTTGTCACAGCGGGAGGCTGAGTCCACCTCGAAGGGGAAGGACATGAGGCGGTGTGCTAGCAAGGATGTTGGGCCTCGAAGGGGGGTGGATTTGGGGGTCCTACATCGATTAGAGAAGTGAACGAGTGTCAACGAGGACGCTAGGCCCTAAAGAGGGGTGAATTGTGAGATCCCACATTTGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCTCTAACAAACGCGTTTGAAAAACCTTGAGGGAAAGCCTGAAAAGGAAAGTCCAAAGTGGACAATATCTGTCAGTGGTGGGCTTGGGCTGTTATGGACCTATTGTCTCTACATATGATGTTTTTATGTTCTTTGAAGGATTAAATGTTTAATGCGTTTAATTAAAGGAACGTGTCAGCCTGAAGCACTAGTTGGTTAAGTTTTCATACCGTGAATGGGGCGTAGTGTCCACTTATAGAGGTTCTGCAGATGGTTTTCTGTTTTTTCTTCCTCTGTTTCTTTGTTCTCCTCTTTTTATTTACTACTTACGATCCAGTGGCGACGCACTTGAATTTAAATCCATGACAATCATTGTTGAGATTTCTTTCTCTTGATAAGGAACATAATATTTCATTGATAAGACGAAATTACAAAAAAAGTGAAATTCCCCTTCCGAATAAAGAGACAAAAATTGTTGAGACTTTGGTATCGAGAATCTTCGACCTACCGCTTGGTCCCATGAATTTTCTCATCTTAATAATGAAATGGAACTAGTTCTAATTTTGGTTCTATTGTACATAAAATGATTGGGTTGTATTAGAGTGCAGAAAAAGTAAGAAGAATAAGATAATACTCTTGGTGCAGGTTATTCTTTAACTTCTTGTCAGGGAGTAACATAAAACAAGAGTATCTCTTGGCTTCTTAATAGACATGGTAATTTGGAATATTGGAGGGATTGAAAAAATAATTACTCAGGTACATTATTAAAAAAATATATTTCTTCTCTCGTTCCGTTTCTTTTATGCCAAGTCTCAATTAAAAGGTGTCTTGCAGATGAGGACGGTTTCTTAGTACCCCTCTCACATACCGGCATACATGTTCGTGTACTTATGCACACACAAAGGAAGTAATAGATTTATGTTCTTGAACATGTGTAAGGTATGTGTATCACATGGTTTTTGGTAGAATTCACATATATGAGTAAGAGAGTGCCAGGCTAATCTGCAACATCCACTGTGGTTATTTTCGTTTTCGGATGGAATAATATGCTGCATACAAACAGGGAAACTTGAAAGTCCGAATTGGAATAAGGGATAAAAATCAAATTTTAAAAGATTATATTTACGATGTCGGTTCGTTTACAGTCTTCTCCTGAAATGAAGGTTTTGTATTTGTTTTGTGGTTATCTACTTTGGTCCTATTGTGGAGATTCATTTCTGCGTGTTGATGTGATCTCTATGTGATTATAGCTACTTTTTTTTTGTATCAACTACTCATTCTTTTGTTTCTCTGTGGATTTGTATTAATTTAGCTGGTTGAGAAGCCCGTTTTAAAAAAGCATCTCTTGTTTTCCCCCTCGTTCGTGTCGATAAGTTTTCTGTCCAGTAACAAGGAGAAGAGAGTTCAGGCAGGTTTCTGATTTGGTTTTAGGAAAGTGGAGCTGTGGTGGGCTGGCGGCTTAAGTTCATGGGAAACCTTAATGATAGAGAGATTGAAGGGTGTATGGCTATCTGGAGCAAGGTCCTTTACTCCGAGTGATTCTAGGATGTGGTTATACTTAAAGGTTGGAACATTTTTTTCGTCAAGTCATTGTTCAACAACCTGGCTGCTAATGATTTTATCATCTCCCAAAGTTCTTCTGCCAAGCAATCTTGAATTTTGAAGGTCAGGAGAAGGTTTATTAGGTGTTGTGACTCTTTTTCTTGGAGGCATCAATAACGGATCTATTCCGAAAGAGGAATCATTATACTCTCTTTCGGGTTGCAATCCTAGTGTAAAGTTGAGCAGAGATGCAAATCACTTGTTTCAGTATATCACTTGTATTTGGTGAACAGTGTATTTCTATTGCTCGTAGGTGGAACCTCTTCGGTGAGTTTGGTAGGTCGTGAGATCCCACATTGGTTGGAGAGGGGAACCAAACATTCCTTATAAGAGTGTGGAAACCTCTCTCTAACAAACGTGTTTTAAAACTTTGAGGGGAAGCTCAGAAGGGAAAGCCCAAAGAGGATAATATCTGCTAGTGGTGGGCTTGGGCTGTCACATAGGTGGTCCTTCCTAGAGATGCCCAAGACTTCATTCTCAACATGTCATGTAGCTATCCTTTTCGGGGCAAGGCTAGAGAAATATGAGAATCTCCAAGGAGATGATATGGGGTGTTTCTTGATCGACTATTTGTCATTGGTGTGTTCTTCATCAAGTTTTTGTTTTTGTTTTTGTGAGTAGCAAGCCTTTTGTTGAGAAAGTGAAGGAATAGTAAGGATGATAAGAAACCCACCCAAATCAAAGGATATTACAGAACCCACATGCAGATGAATTTCTTAATTCTATCACGTCTTCCATAGCTGATTGTCACATTGTGTACAAAAATCACATTGTTTACAAAAATCACATTGTTGATTTCTGCTTCGTACTGGTTTACTTATGTATACTCTATATTATATGCTTGATGAGCTATGGCTGTATCCCTTGTCCTCTTTACCCTCCTAACGAACACTCCGGTCATATTGAATAGGATGTGGGCCAGAAAATTATGCTGTTTATGCAACAATGTAAGCGGGAAATCTGTATCCTTTCCGCATCTGGTTCGATCTCCAATGCATCTCTCCGTCAGCCGGCCTCATCCGGTGGCAATGTTACGTATGAG

mRNA sequence

ATGGAACCCAATGACAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAAGTCCCACCACATCGCCGACCAATGGCCGTCTACCCTCCACCCACCACCTCTCCTCCGCCGACGCCACCACCCATGTCCTTTACCCTCACTCGGTTCCCTCCGCCGCCGTCTCCTCCTCTCCTCTCGAGCCCGGTCGCCGGAAGAGAGGTCGCCCGCGGAAGTACGGCACGCCGGAGGAGGCTTTAGCGGCTAAGAAAGCTGCTACGGCGTCGTCTCACTCTTCCTCCAAGGCCAAGAAGGACCTCGTTTCTTCCTCTTCTCTTAATGCCGTTTCCGCTTCTTCGAAGAAATCTCAGTTGGCTGCACTTGGTAATGCAGGCCAAGGTTTTGCGCCACAGGTTATTGATGTGGCAGCTGGTGAGGATGTGGGCCAGAAAATTATGCTGTTTATGCAACAATGTAAGCGGGAAATCTGTATCCTTTCCGCATCTGGTTCGATCTCCAATGCATCTCTCCGTCAGCCGGCCTCATCCGGTGGCAATGTTACGTATGAG

Coding sequence (CDS)

ATGGAACCCAATGACAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAAGTCCCACCACATCGCCGACCAATGGCCGTCTACCCTCCACCCACCACCTCTCCTCCGCCGACGCCACCACCCATGTCCTTTACCCTCACTCGGTTCCCTCCGCCGCCGTCTCCTCCTCTCCTCTCGAGCCCGGTCGCCGGAAGAGAGGTCGCCCGCGGAAGTACGGCACGCCGGAGGAGGCTTTAGCGGCTAAGAAAGCTGCTACGGCGTCGTCTCACTCTTCCTCCAAGGCCAAGAAGGACCTCGTTTCTTCCTCTTCTCTTAATGCCGTTTCCGCTTCTTCGAAGAAATCTCAGTTGGCTGCACTTGGTAATGCAGGCCAAGGTTTTGCGCCACAGGTTATTGATGTGGCAGCTGGTGAGGATGTGGGCCAGAAAATTATGCTGTTTATGCAACAATGTAAGCGGGAAATCTGTATCCTTTCCGCATCTGGTTCGATCTCCAATGCATCTCTCCGTCAGCCGGCCTCATCCGGTGGCAATGTTACGTATGAG

Protein sequence

MEPNDNQLSSYFHHHQHHHQSPTTSPTNGRLPSTHHLSSADATTHVLYPHSVPSAAVSSSPLEPGRRKRGRPRKYGTPEEALAAKKAATASSHSSSKAKKDLVSSSSLNAVSASSKKSQLAALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPASSGGNVTYE

Homology

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BLAST of Carg17437 vs. NCBI nr
Match: XP_023537747.1 (AT-hook motif nuclear-localized protein 14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 181/185 (97.84%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MEPNDNQLSXXXXXXXXXXXXXXXXXXNGRLPSTHHLSSADATTHVLYPHSVPSAAVSSS 60
           MEPNDNQLSXXXXXXXXXXXXXXXXXX   LPSTHHLSSADATTHVLYPHSVPSAA+SSS
Sbjct: 1   MEPNDNQLSXXXXXXXXXXXXXXXXXXXXLLPSTHHLSSADATTHVLYPHSVPSAAISSS 60

Query: 61  PLEPGRRKRGRPRKYGTPEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQL 120
           PLEPGRRKRGRPRKYGTPEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQL
Sbjct: 61  PLEPGRRKRGRPRKYGTPEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQL 120

Query: 121 AALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPASSGG 180
           AALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPASSGG
Sbjct: 121 AALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPASSGG 180

Query: 181 NVTYE 186
           NVTYE
Sbjct: 181 NVTYE 185

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BLAST of Carg17437 vs. NCBI nr
Match: XP_022937928.1 (AT-hook motif nuclear-localized protein 14-like [Cucurbita moschata])

HSP 1 Score: 229.9 bits (585), Expect = 6.8e-57
Identity = 181/185 (97.84%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MEPNDNQLSXXXXXXXXXXXXXXXXXXNGRLPSTHHLSSADATTHVLYPHSVPSAAVSSS 60
           MEPNDNQLSXXXXXXXXXXXXXXXXXX   LPSTHHLSSADATTHVLYPHSVPSAAVSSS
Sbjct: 1   MEPNDNQLSXXXXXXXXXXXXXXXXXXXXLLPSTHHLSSADATTHVLYPHSVPSAAVSSS 60

Query: 61  PLEPGRRKRGRPRKYGTPEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQL 120
           PLEPGRRKRGRPRKYGTPEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQL
Sbjct: 61  PLEPGRRKRGRPRKYGTPEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQL 120

Query: 121 AALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPASSGG 180
           AALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASG ISNASLRQPASSGG
Sbjct: 121 AALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGLISNASLRQPASSGG 180

Query: 181 NVTYE 186
           NVTYE
Sbjct: 181 NVTYE 185

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BLAST of Carg17437 vs. NCBI nr
Match: XP_022965813.1 (AT-hook motif nuclear-localized protein 14-like [Cucurbita maxima] >XP_022965814.1 AT-hook motif nuclear-localized protein 14-like [Cucurbita maxima])

HSP 1 Score: 228.4 bits (581), Expect = 2.0e-56
Identity = 179/185 (96.76%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MEPNDNQLSXXXXXXXXXXXXXXXXXXNGRLPSTHHLSSADATTHVLYPHSVPSAAVSSS 60
           MEPNDNQLSXXXXXXXXXXXXXXXXXX   LPSTHHLSSADATTHVLYPHSVPSAAVSSS
Sbjct: 1   MEPNDNQLSXXXXXXXXXXXXXXXXXXXXLLPSTHHLSSADATTHVLYPHSVPSAAVSSS 60

Query: 61  PLEPGRRKRGRPRKYGTPEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQL 120
           PLEPGRRKRGRPRKYGTPEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQL
Sbjct: 61  PLEPGRRKRGRPRKYGTPEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQL 120

Query: 121 AALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPASSGG 180
           AALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASG +SNASLRQP+SSGG
Sbjct: 121 AALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGLVSNASLRQPSSSGG 180

Query: 181 NVTYE 186
           NVTYE
Sbjct: 181 NVTYE 185

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BLAST of Carg17437 vs. NCBI nr
Match: XP_004139392.1 (PREDICTED: AT-hook motif nuclear-localized protein 14 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 1.9e-38
Identity = 130/148 (87.84%), Postives = 134/148 (90.54%), Query Frame = 0


Query: 45  HVLYPHSVPSAAVSSSPLEPGRRKRGRPRKYGTPE-------EALXXXXXXXXXXXXXXX 104
           HV+YPHSVPSAAVSSSPLEP RRKRGRPRKYGTPE          XXXXXXXXXXXXXXX
Sbjct: 50  HVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEXXXXXXXXXXXXXXXXXXXXXXXXX 109

Query: 105 XXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKRE 164
           XXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAP VI+VAAGEDVGQKIM FMQQCKRE
Sbjct: 110 XXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAPHVINVAAGEDVGQKIMQFMQQCKRE 169

Query: 165 ICILSASGSISNASLRQPASSGGNVTYE 186
           ICILSASGSISNASLRQPA+SGGN+ YE
Sbjct: 170 ICILSASGSISNASLRQPAASGGNIAYE 197

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BLAST of Carg17437 vs. NCBI nr
Match: XP_008456418.1 (PREDICTED: AT-hook motif nuclear-localized protein 14 isoform X2 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 1.9e-38
Identity = 130/148 (87.84%), Postives = 134/148 (90.54%), Query Frame = 0


Query: 45  HVLYPHSVPSAAVSSSPLEPGRRKRGRPRKYGTPE-------EALXXXXXXXXXXXXXXX 104
           HV+YPHSVPSAAVSSSPLEP RRKRGRPRKYGTPE          XXXXXXXXXXXXXXX
Sbjct: 50  HVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEXXXXXXXXXXXXXXXXXXXXXXXXX 109

Query: 105 XXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKRE 164
           XXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAP VI+VAAGEDVGQKIM FMQQCKRE
Sbjct: 110 XXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAPHVINVAAGEDVGQKIMQFMQQCKRE 169

Query: 165 ICILSASGSISNASLRQPASSGGNVTYE 186
           ICILSASGSISNASLRQPA+SGGN+ YE
Sbjct: 170 ICILSASGSISNASLRQPAASGGNIAYE 197

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BLAST of Carg17437 vs. TAIR10
Match: AT3G04590.2 (AT hook motif DNA-binding family protein)

HSP 1 Score: 124.0 bits (310), Expect = 9.5e-29
Identity = 105/156 (67.31%), Postives = 127/156 (81.41%), Query Frame = 0


Query: 32  PSTHHLSSADATTHVLYPHSVPSAAVSSSPLEPGRRKRGRPRKYGTPEEAL--XXXXXXX 91
           P   H  +  +++  +YPHSVPS+AV ++P+EP +RKRGRPRKY TPE+AL  XXXXXXX
Sbjct: 72  PQPQHQPNDGSSSLAVYPHSVPSSAV-TAPMEPVKRKRGRPRKYVTPEQALAXXXXXXXX 131

Query: 92  XXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAPQVIDVAAGEDVGQKIML 151
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX QL ++G  GQ F P ++++A GEDV QKIM+
Sbjct: 132 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMM 191

Query: 152 FMQQCKREICILSASGSISNASLRQPASSGGNVTYE 186
           F  Q K E+C+LSASG+ISNASLRQPA SGGN+ YE
Sbjct: 192 FANQSKHELCVLSASGTISNASLRQPAPSGGNLPYE 226

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BLAST of Carg17437 vs. TAIR10
Match: AT2G33620.1 (AT hook motif DNA-binding family protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-16
Identity = 63/134 (47.01%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 54  SAAVSSSPLEPGRRKRGRPRKYG--TPEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 113
           S  ++ +  EP +++RGRPRKYG  + E +L                  XXXXXXXXXXX
Sbjct: 85  SGGMTGTGSEPVKKRRGRPRKYGPDSGEMSLGLNPGAPSFTVSQPSSGGXXXXXXXXXXX 144

Query: 114 XXXXXXSQLAALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNAS 173
           X      +L ALG+ G GF P V+ V AGEDV  KIM       R +C+LSA+G+ISN +
Sbjct: 145 XSSSKRLKLQALGSTGIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVLSANGAISNVT 204

Query: 174 LRQPASSGGNVTYE 186
           LRQ A+SGG VTYE
Sbjct: 205 LRQSATSGGTVTYE 218

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BLAST of Carg17437 vs. TAIR10
Match: AT4G25320.1 (AT hook motif DNA-binding family protein)

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-13
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 118 SQLAALGNA---GQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQ 177
           + LA +G A   G  F P V+ V AGEDV  KIM F QQ  R ICILSA+G ISN +LRQ
Sbjct: 151 TNLAGVGTADFVGANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQ 210

Query: 178 PASSGGNVTYE 186
             +SGG +TYE
Sbjct: 211 SMTSGGTLTYE 221

[Close]

BLAST of Carg17437 vs. TAIR10
Match: AT5G46640.1 (AT hook motif DNA-binding family protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-12
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 119 QLAAL-GNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPAS 178
           QL AL G +G GF P VI+V  GED+  K+M F  Q  R ICILSASG++S   LRQ + 
Sbjct: 168 QLDALGGTSGVGFTPHVIEVNTGEDIASKVMAFSDQGSRTICILSASGAVSRVMLRQASH 227

Query: 179 SGGNVTYE 186
           S G VTYE
Sbjct: 228 SSGIVTYE 235

[Close]

BLAST of Carg17437 vs. TAIR10
Match: AT5G51590.1 (AT hook motif DNA-binding family protein)

HSP 1 Score: 68.6 bits (166), Expect = 4.8e-12
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 130 FAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPASSGGNVTYE 186
           F P V+ V AGEDV  KIM F QQ  R ICILSA+G ISN +LRQ  +SGG +TYE
Sbjct: 178 FTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYE 233

[Close]

BLAST of Carg17437 vs. Swiss-Prot
Match: sp|A1L4X7|AHL14_ARATH (AT-hook motif nuclear-localized protein 14 OS=Arabidopsis thaliana OX=3702 GN=AHL14 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-27
Identity = 105/156 (67.31%), Postives = 127/156 (81.41%), Query Frame = 0


Query: 32  PSTHHLSSADATTHVLYPHSVPSAAVSSSPLEPGRRKRGRPRKYGTPEEAL--XXXXXXX 91
           P   H  +  +++  +YPHSVPS+AV ++P+EP +RKRGRPRKY TPE+AL  XXXXXXX
Sbjct: 72  PQPQHQPNDGSSSLAVYPHSVPSSAV-TAPMEPVKRKRGRPRKYVTPEQALAXXXXXXXX 131

Query: 92  XXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAPQVIDVAAGEDVGQKIML 151
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX QL ++G  GQ F P ++++A GEDV QKIM+
Sbjct: 132 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMM 191

Query: 152 FMQQCKREICILSASGSISNASLRQPASSGGNVTYE 186
           F  Q K E+C+LSASG+ISNASLRQPA SGGN+ YE
Sbjct: 192 FANQSKHELCVLSASGTISNASLRQPAPSGGNLPYE 226

[Close]

BLAST of Carg17437 vs. Swiss-Prot
Match: sp|O22812|AHL10_ARATH (AT-hook motif nuclear-localized protein 10 OS=Arabidopsis thaliana OX=3702 GN=AHL10 PE=1 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 4.4e-15
Identity = 63/134 (47.01%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 54  SAAVSSSPLEPGRRKRGRPRKYG--TPEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 113
           S  ++ +  EP +++RGRPRKYG  + E +L                  XXXXXXXXXXX
Sbjct: 85  SGGMTGTGSEPVKKRRGRPRKYGPDSGEMSLGLNPGAPSFTVSQPSSGGXXXXXXXXXXX 144

Query: 114 XXXXXXSQLAALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNAS 173
           X      +L ALG+ G GF P V+ V AGEDV  KIM       R +C+LSA+G+ISN +
Sbjct: 145 XSSSKRLKLQALGSTGIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVLSANGAISNVT 204

Query: 174 LRQPASSGGNVTYE 186
           LRQ A+SGG VTYE
Sbjct: 205 LRQSATSGGTVTYE 218

[Close]

BLAST of Carg17437 vs. Swiss-Prot
Match: sp|Q9SB31|AHL3_ARATH (AT-hook motif nuclear-localized protein 3 OS=Arabidopsis thaliana OX=3702 GN=AHL3 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 118 SQLAALGNA---GQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQ 177
           + LA +G A   G  F P V+ V AGEDV  KIM F QQ  R ICILSA+G ISN +LRQ
Sbjct: 151 TNLAGVGTADFVGANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQ 210

Query: 178 PASSGGNVTYE 186
             +SGG +TYE
Sbjct: 211 SMTSGGTLTYE 221

[Close]

BLAST of Carg17437 vs. Swiss-Prot
Match: sp|Q9FIR1|AHL8_ARATH (AT-hook motif nuclear-localized protein 8 OS=Arabidopsis thaliana OX=3702 GN=AHL8 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 119 QLAAL-GNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPAS 178
           QL AL G +G GF P VI+V  GED+  K+M F  Q  R ICILSASG++S   LRQ + 
Sbjct: 168 QLDALGGTSGVGFTPHVIEVNTGEDIASKVMAFSDQGSRTICILSASGAVSRVMLRQASH 227

Query: 179 SGGNVTYE 186
           S G VTYE
Sbjct: 228 SSGIVTYE 235

[Close]

BLAST of Carg17437 vs. Swiss-Prot
Match: sp|Q9FHM5|AHL4_ARATH (AT-hook motif nuclear-localized protein 4 OS=Arabidopsis thaliana OX=3702 GN=AHL4 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.6e-11
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 130 FAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPASSGGNVTYE 186
           F P V+ V AGEDV  KIM F QQ  R ICILSA+G ISN +LRQ  +SGG +TYE
Sbjct: 178 FTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYE 233

[Close]

BLAST of Carg17437 vs. TrEMBL
Match: tr|A0A1S3C3W0|A0A1S3C3W0_CUCME (AT-hook motif nuclear-localized protein 14 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496356 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 130/148 (87.84%), Postives = 134/148 (90.54%), Query Frame = 0


Query: 45  HVLYPHSVPSAAVSSSPLEPGRRKRGRPRKYGTPE-------EALXXXXXXXXXXXXXXX 104
           HV+YPHSVPSAAVSSSPLEP RRKRGRPRKYGTPE          XXXXXXXXXXXXXXX
Sbjct: 50  HVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEXXXXXXXXXXXXXXXXXXXXXXXXX 109

Query: 105 XXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKRE 164
           XXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAP VI+VAAGEDVGQKIM FMQQCKRE
Sbjct: 110 XXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAPHVINVAAGEDVGQKIMQFMQQCKRE 169

Query: 165 ICILSASGSISNASLRQPASSGGNVTYE 186
           ICILSASGSISNASLRQPA+SGGN+ YE
Sbjct: 170 ICILSASGSISNASLRQPAASGGNIAYE 197

[Close]

BLAST of Carg17437 vs. TrEMBL
Match: tr|A0A0A0LJ73|A0A0A0LJ73_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009590 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 130/148 (87.84%), Postives = 134/148 (90.54%), Query Frame = 0


Query: 45  HVLYPHSVPSAAVSSSPLEPGRRKRGRPRKYGTPE-------EALXXXXXXXXXXXXXXX 104
           HV+YPHSVPSAAVSSSPLEP RRKRGRPRKYGTPE          XXXXXXXXXXXXXXX
Sbjct: 64  HVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEXXXXXXXXXXXXXXXXXXXXXXXXX 123

Query: 105 XXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKRE 164
           XXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAP VI+VAAGEDVGQKIM FMQQCKRE
Sbjct: 124 XXXXXXXXXXXXXXXXXXXXSQLAALGNAGQGFAPHVINVAAGEDVGQKIMQFMQQCKRE 183

Query: 165 ICILSASGSISNASLRQPASSGGNVTYE 186
           ICILSASGSISNASLRQPA+SGGN+ YE
Sbjct: 184 ICILSASGSISNASLRQPAASGGNIAYE 211

[Close]

BLAST of Carg17437 vs. TrEMBL
Match: tr|M5WBI8|M5WBI8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G347600 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.0e-37
Identity = 144/194 (74.23%), Postives = 158/194 (81.44%), Query Frame = 0


Query: 1   MEPNDNQLS---------XXXXXXXXXXXXXXXXXXNGRLPSTHHLSSADATTHVLYPHS 60
           MEPN+NQLS         XXXXXXXXXXXXXXX   NG LP+TH   S D  +H++Y HS
Sbjct: 1   MEPNENQLSSYFQHPTTXXXXXXXXXXXXXXXXSPTNGLLPNTH---STDG-SHMVYSHS 60

Query: 61  VPSAAVSSSPLEPGRRKRGRPRKYGTPEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           VPS+AV +SPLEP +RKRGRPRKYGTPE+ALXXXXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  VPSSAV-TSPLEPAKRKRGRPRKYGTPEQALXXXXXXXXXXXXXXXXXXXXXXXXXXXXY 120

Query: 121 XXXXXXSQLAALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNAS 180
                 SQ  +LGNAGQGF P V+ VAAGEDVGQKIM FMQQ KREICILSASG+ISNAS
Sbjct: 121 SGSTKKSQQFSLGNAGQGFTPHVLTVAAGEDVGQKIMFFMQQSKREICILSASGTISNAS 180

Query: 181 LRQPASSGGNVTYE 186
           LRQPA+SGGN+TYE
Sbjct: 181 LRQPATSGGNITYE 189

[Close]

BLAST of Carg17437 vs. TrEMBL
Match: tr|A0A251P008|A0A251P008_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G347600 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.0e-37
Identity = 144/194 (74.23%), Postives = 158/194 (81.44%), Query Frame = 0


Query: 1   MEPNDNQLS---------XXXXXXXXXXXXXXXXXXNGRLPSTHHLSSADATTHVLYPHS 60
           MEPN+NQLS         XXXXXXXXXXXXXXX   NG LP+TH   S D  +H++Y HS
Sbjct: 1   MEPNENQLSSYFQHPTTXXXXXXXXXXXXXXXXSPTNGLLPNTH---STDG-SHMVYSHS 60

Query: 61  VPSAAVSSSPLEPGRRKRGRPRKYGTPEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           VPS+AV +SPLEP +RKRGRPRKYGTPE+ALXXXXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  VPSSAV-TSPLEPAKRKRGRPRKYGTPEQALXXXXXXXXXXXXXXXXXXXXXXXXXXXXY 120

Query: 121 XXXXXXSQLAALGNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCKREICILSASGSISNAS 180
                 SQ  +LGNAGQGF P V+ VAAGEDVGQKIM FMQQ KREICILSASG+ISNAS
Sbjct: 121 SGSTKKSQQFSLGNAGQGFTPHVLTVAAGEDVGQKIMFFMQQSKREICILSASGTISNAS 180

Query: 181 LRQPASSGGNVTYE 186
           LRQPA+SGGN+TYE
Sbjct: 181 LRQPATSGGNITYE 189

[Close]

BLAST of Carg17437 vs. TrEMBL
Match: tr|A0A1S3C2R6|A0A1S3C2R6_CUCME (AT-hook motif nuclear-localized protein 14 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496356 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.0e-37
Identity = 130/150 (86.67%), Postives = 134/150 (89.33%), Query Frame = 0


Query: 45  HVLYPHSVPSAAVSSSPLEPGRRKRGRPRKYGTPE-------EALXXXXXXXXXXXXXXX 104
           HV+YPHSVPSAAVSSSPLEP RRKRGRPRKYGTPE          XXXXXXXXXXXXXXX
Sbjct: 50  HVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEXXXXXXXXXXXXXXXXXXXXXXXXX 109

Query: 105 XXXXXXXXXXXXXXXXXXXXSQLAAL--GNAGQGFAPQVIDVAAGEDVGQKIMLFMQQCK 164
           XXXXXXXXXXXXXXXXXXXXSQLAAL  GNAGQGFAP VI+VAAGEDVGQKIM FMQQCK
Sbjct: 110 XXXXXXXXXXXXXXXXXXXXSQLAALDVGNAGQGFAPHVINVAAGEDVGQKIMQFMQQCK 169

Query: 165 REICILSASGSISNASLRQPASSGGNVTYE 186
           REICILSASGSISNASLRQPA+SGGN+ YE
Sbjct: 170 REICILSASGSISNASLRQPAASGGNIAYE 199

The following BLAST results are available for this feature:

BLAST of Carg17437 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537747.1	1.8e-57	97.84	AT-hook motif nuclear-localized protein 14-like [Cucurbita pepo subsp. pepo]	[more]
XP_022937928.1	6.8e-57	97.84	AT-hook motif nuclear-localized protein 14-like [Cucurbita moschata]	[more]
XP_022965813.1	2.0e-56	96.76	AT-hook motif nuclear-localized protein 14-like [Cucurbita maxima] >XP_022965814...	[more]
XP_004139392.1	1.9e-38	87.84	PREDICTED: AT-hook motif nuclear-localized protein 14 [Cucumis sativus]	[more]
XP_008456418.1	1.9e-38	87.84	PREDICTED: AT-hook motif nuclear-localized protein 14 isoform X2 [Cucumis melo]	[more]

BLAST of Carg17437 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04590.2	9.5e-29	67.31	AT hook motif DNA-binding family protein	[more]
AT2G33620.1	2.4e-16	47.01	AT hook motif DNA-binding family protein	[more]
AT4G25320.1	5.6e-13	56.34	AT hook motif DNA-binding family protein	[more]
AT5G46640.1	1.3e-12	55.88	AT hook motif DNA-binding family protein	[more]
AT5G51590.1	4.8e-12	62.50	AT hook motif DNA-binding family protein	[more]

BLAST of Carg17437 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A1L4X7\|AHL14_ARATH	1.7e-27	67.31	AT-hook motif nuclear-localized protein 14 OS=Arabidopsis thaliana OX=3702 GN=AH...	[more]
sp\|O22812\|AHL10_ARATH	4.4e-15	47.01	AT-hook motif nuclear-localized protein 10 OS=Arabidopsis thaliana OX=3702 GN=AH...	[more]
sp\|Q9SB31\|AHL3_ARATH	1.0e-11	56.34	AT-hook motif nuclear-localized protein 3 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
sp\|Q9FIR1\|AHL8_ARATH	2.3e-11	55.88	AT-hook motif nuclear-localized protein 8 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
sp\|Q9FHM5\|AHL4_ARATH	8.6e-11	62.50	AT-hook motif nuclear-localized protein 4 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]

BLAST of Carg17437 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C3W0\|A0A1S3C3W0_CUCME	1.2e-38	87.84	AT-hook motif nuclear-localized protein 14 isoform X2 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LJ73\|A0A0A0LJ73_CUCSA	1.2e-38	87.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009590 PE=4 SV=1	[more]
tr\|M5WBI8\|M5WBI8_PRUPE	1.0e-37	74.23	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G347600 PE=4 SV=1	[more]
tr\|A0A251P008\|A0A251P008_PRUPE	1.0e-37	74.23	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G347600 PE=4 SV=1	[more]
tr\|A0A1S3C2R6\|A0A1S3C2R6_CUCME	4.0e-37	86.67	AT-hook motif nuclear-localized protein 14 isoform X1 OS=Cucumis melo OX=3656 GN...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005175	PPC_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17437-RA	Carg17437-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005175	PPC domain	PFAM	PF03479	DUF296	coord: 132..172 e-value: 1.6E-7 score: 31.7
IPR005175	PPC domain	PROSITE	PS51742	PPC	coord: 126..185 score: 18.761
IPR005175	PPC domain	CDD	cd11378	DUF296	coord: 134..185 e-value: 1.28369E-7 score: 45.6542
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..104
None	No IPR available	PANTHER	PTHR31500:SF22	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14-RELATED	coord: 1..185
None	No IPR available	PANTHER	PTHR31500	FAMILY NOT NAMED	coord: 1..185
None	No IPR available	SUPERFAMILY	SSF117856	AF0104/ALDC/Ptd012-like	coord: 130..179

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17437	Cla013624	Watermelon (97103) v1	carwmB0242
Carg17437	Csa2G009590	Cucumber (Chinese Long) v2	carcuB0282
Carg17437	ClCG02G016970	Watermelon (Charleston Gray)	carwcgB0245
Carg17437	CSPI02G02610	Wild cucumber (PI 183967)	carcpiB0286
Carg17437	Cucsa.132930	Cucumber (Gy14) v1	carcgyB0300
Carg17437	CmaCh05G012290	Cucurbita maxima (Rimu)	carcmaB0356
Carg17437	CmaCh12G011460	Cucurbita maxima (Rimu)	carcmaB0355
Carg17437	CmoCh12G011670	Cucurbita moschata (Rifu)	carcmoB0356
Carg17437	CmoCh05G012560	Cucurbita moschata (Rifu)	carcmoB0357
Carg17437	Lsi11G004120	Bottle gourd (USVL1VR-Ls)	carlsiB226
Carg17437	Cp4.1LG07g09760	Cucurbita pepo (Zucchini)	carcpeB0361
Carg17437	Cp4.1LG11g10080	Cucurbita pepo (Zucchini)	carcpeB0357
Carg17437	CsGy2G002710	Cucumber (Gy14) v2	carcgybB0269
Carg17437	MELO3C004418.2	Melon (DHL92) v3.6.1	carmedB0268
Carg17437	CsaV3_2G003780	Cucumber (Chinese Long) v3	carcucB0286
Carg17437	Cla97C02G042690	Watermelon (97103) v2	carwmbB0259
Carg17437	Bhi06G001556	Wax gourd	carwgoB0333

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17437	Carg23004	Silver-seed gourd	carcarB297

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17437	Melon (DHL92) v3.5.1	carmeB0258