Carg17421 (gene) Silver-seed gourd

Overview
NameCarg17421
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionpentatricopeptide repeat-containing protein At4g14850
LocationCucurbita_argyrosperma_scaffold_092 : 537325 .. 537827 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCACCGAAACCTCGAGACGTTAAATGCGTATATATCCAATTCTGTGCTCCATGGGCGGGCTGAGGACTCTACCATTGCATTTATTGAGCCACTTCGAGTTGGTGGGAAGGCAGATTCAATAATGTCTGCTTTTCTCAATGCGTATTCAGAGAAACTAGGCTGGGTGCATGGGTGTCAGCTACATGGGTTCATTATTCGAAGTGGGTGTGCGCAGAATGTCTCTGTTTCAAATGGGTTGATAGCTTTTTATGGGAAATGTGGGGAGGTTGAATGCTCTGAGATGGTTTTTGACAGAATGGGAGAGCGGAAGAGAAAATGCCTGTGAGAAACTTAGTGTCTTGGAATACGTTGTTGGGCGGATACGCAGACAAGGCTGTGGCGTTGCTCGAGGAGATGGCATCGATGGTGGGCATGGCGCCGAGCTATGTAAGCTTGGTTTGTGCATTATCAGCTTGCAGTAGAGCAGGAGATTTGAAGATGGGGATGCAGATTTTCTGA

mRNA sequence

ATGCCTCACCGAAACCTCGAGACGTTAAATGCGTATATATCCAATTCTGTGCTCCATGGGCGGGCTGAGGACTCTACCATTGCATTTATTGAGCCACTTCGAGTTGGTGGGAAGGCAGATTCAATAATGTCTGCTTTTCTCAATGCGTATTCAGAGAAACTAGGCTGGGTGCATGGGTGTCAGCTACATGGGTTCATTATTCGAAGTGGGTGTGCGCAGAATGTCTCTGTTTCAAATGGGTTGATAGCTTTTTATGGGAAATGTGGGGAGGTTGAATGCTCTGAGATGAATGGGAGAGCGGAAGAGAAAATGCCTGTGAGAAACTTAGTGTCTTGGAATACGTTGTTGGGCGGATACGCAGACAAGGCTGTGGCGTTGCTCGAGGAGATGGCATCGATGGTGGGCATGGCGCCGAGCTATGTAAGCTTGGTTTGTGCATTATCAGCTTGCAGTAGAGCAGGAGATTTGAAGATGGGGATGCAGATTTTCTGA

Coding sequence (CDS)

ATGCCTCACCGAAACCTCGAGACGTTAAATGCGTATATATCCAATTCTGTGCTCCATGGGCGGGCTGAGGACTCTACCATTGCATTTATTGAGCCACTTCGAGTTGGTGGGAAGGCAGATTCAATAATGTCTGCTTTTCTCAATGCGTATTCAGAGAAACTAGGCTGGGTGCATGGGTGTCAGCTACATGGGTTCATTATTCGAAGTGGGTGTGCGCAGAATGTCTCTGTTTCAAATGGGTTGATAGCTTTTTATGGGAAATGTGGGGAGGTTGAATGCTCTGAGATGAATGGGAGAGCGGAAGAGAAAATGCCTGTGAGAAACTTAGTGTCTTGGAATACGTTGTTGGGCGGATACGCAGACAAGGCTGTGGCGTTGCTCGAGGAGATGGCATCGATGGTGGGCATGGCGCCGAGCTATGTAAGCTTGGTTTGTGCATTATCAGCTTGCAGTAGAGCAGGAGATTTGAAGATGGGGATGCAGATTTTCTGA

Protein sequence

MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSIMSAFLNAYSEKLGWVHGCQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSEMNGRAEEKMPVRNLVSWNTLLGGYADKAVALLEEMASMVGMAPSYVSLVCALSACSRAGDLKMGMQIF
Homology
[Close]
BLAST of Carg17421 vs. NCBI nr
Match: XP_022979420.1 (pentatricopeptide repeat-containing protein At4g14850 [Cucurbita maxima] >XP_022979421.1 pentatricopeptide repeat-containing protein At4g14850 [Cucurbita maxima] >XP_022979423.1 pentatricopeptide repeat-containing protein At4g14850 [Cucurbita maxima] >XP_022979424.1 pentatricopeptide repeat-containing protein At4g14850 [Cucurbita maxima] >XP_022979425.1 pentatricopeptide repeat-containing protein At4g14850 [Cucurbita maxima] >XP_022979426.1 pentatricopeptide repeat-containing protein At4g14850 [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 2.9e-51
Identity = 136/267 (50.94%), Postives = 141/267 (52.81%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSI-MSAFLNAYSEKLGWVHG 60
           MPHRNLET NAYISNSVLHGR EDS IAFIE LR GGK DSI   AFLNA S+KLG   G
Sbjct: 169 MPHRNLETWNAYISNSVLHGRPEDSAIAFIELLRAGGKPDSITFCAFLNACSDKLGLEPG 228

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSE------------------------ 120
           CQLHGFIIRSGC QNVS+SNGLI FYGKCGEV CSE                        
Sbjct: 229 CQLHGFIIRSGCGQNVSISNGLIDFYGKCGEVICSEVIFDRMGERNSVSWSSLIAAYVQN 288

Query: 121 ------------------------------------------------------------ 164
                                                                       
Sbjct: 289 NEEEKACCLFLRARKEGIKPTDFMVSSVLCASAGLSEIELGRSVQALAVKACVEENIFVG 348

[Close]
BLAST of Carg17421 vs. NCBI nr
Match: XP_022956070.1 (pentatricopeptide repeat-containing protein At4g14850 [Cucurbita moschata])

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 133/267 (49.81%), Postives = 140/267 (52.43%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSI-MSAFLNAYSEKLGWVHG 60
           MPHRNLET NAYISNSVLHGR EDS IAFIE LR GGK DSI   AFLNA S+KLG   G
Sbjct: 169 MPHRNLETWNAYISNSVLHGRPEDSAIAFIELLRAGGKPDSITFCAFLNACSDKLGLEPG 228

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSE---------------------MNG 120
           CQLHGFIIRSGC QNVS+SNGLI FYGKCGEV CSE                     +  
Sbjct: 229 CQLHGFIIRSGCGQNVSISNGLIDFYGKCGEVVCSEVIFDRMGERNSVSWSSLIAAYVQN 288

Query: 121 RAEEK------------------------------------------------------- 164
             EEK                                                       
Sbjct: 289 NEEEKACCLFLRARKEDIKPTDFMVSSVLCASAGLSEIELGRSVQALAVKACVDENIFVG 348

[Close]
BLAST of Carg17421 vs. NCBI nr
Match: XP_004134445.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Cucumis sativus] >XP_011650980.1 PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Cucumis sativus] >KGN56980.1 hypothetical protein Csa_3G146650 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 7.1e-50
Identity = 133/267 (49.81%), Postives = 138/267 (51.69%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSI-MSAFLNAYSEKLGWVHG 60
           MPHRNLET NAYISNSVLHGR EDS IAFIE LRVGGK DSI   AFLNA S+KLG   G
Sbjct: 169 MPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLGPG 228

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSEM---------------------NG 120
           CQLHGFIIRSG  QNVSVSNGLI FYGKCGEVECSEM                       
Sbjct: 229 CQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQN 288

Query: 121 RAEEK------------------------------------------------------- 164
             EEK                                                       
Sbjct: 289 NEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVA 348

[Close]
BLAST of Carg17421 vs. NCBI nr
Match: XP_022137756.1 (pentatricopeptide repeat-containing protein At4g14850 [Momordica charantia])

HSP 1 Score: 204.9 bits (520), Expect = 2.1e-49
Identity = 133/267 (49.81%), Postives = 139/267 (52.06%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSI-MSAFLNAYSEKLGWVHG 60
           MPHRNLET NAYISNSV HGR EDS IAF+E LR GG  DSI   AFLNA S+KLG   G
Sbjct: 169 MPHRNLETWNAYISNSVHHGRPEDSVIAFLELLRAGGSPDSITFCAFLNACSDKLGLEPG 228

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECS------------------------- 120
           CQLHGFIIRSG  QNVSVSNGLI FYGKCGEVECS                         
Sbjct: 229 CQLHGFIIRSGFEQNVSVSNGLIDFYGKCGEVECSGMVFDRMGERNAVSWSSLIAAYIQN 288

Query: 121 ------------------------------------------------------------ 164
                                                                       
Sbjct: 289 NEEEKACCLFLQARKEDIKPIDFMVSSVLCACAGLSGIELGRSVQALAVKACVEENIFVG 348

[Close]
BLAST of Carg17421 vs. NCBI nr
Match: XP_008438671.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 1.5e-47
Identity = 129/267 (48.31%), Postives = 136/267 (50.94%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSI-MSAFLNAYSEKLGWVHG 60
           MP RNLET NAYI+NSVLHGR EDS IAFIE LRVG K DSI   AFLNA S+KLG   G
Sbjct: 169 MPQRNLETWNAYITNSVLHGRPEDSAIAFIELLRVGEKPDSITFCAFLNACSDKLGLGPG 228

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSEM---------------------NG 120
           CQLHGF+IRSG  QNVSVSNGLI FYGKCGEVECSEM                       
Sbjct: 229 CQLHGFVIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQN 288

Query: 121 RAEEK------------------------------------------------------- 164
             EEK                                                       
Sbjct: 289 NEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVA 348

[Close]
BLAST of Carg17421 vs. TAIR10
Match: AT4G14850.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 111.3 bits (277), Expect = 5.6e-25
Identity = 90/271 (33.21%), Postives = 117/271 (43.17%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSI-MSAFLNAYSEKLGWVH- 60
           +P RNLET NA+ISNSV  GR  ++  AFIE  R+ G  +SI   AFLNA S+   W+H 
Sbjct: 169 IPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSD---WLHL 228

Query: 61  --GCQLHGFIIRSGCAQNVSVSNGLIAFYGKC---------------------------- 120
             G QLHG ++RSG   +VSV NGLI FYGKC                            
Sbjct: 229 NLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAY 288

Query: 121 ------------------------------------------------------------ 164
                                                                       
Sbjct: 289 VQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTI 348

[Close]
BLAST of Carg17421 vs. TAIR10
Match: AT3G22690.1 (Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885))

HSP 1 Score: 84.0 bits (206), Expect = 9.6e-17
Identity = 47/160 (29.38%), Postives = 87/160 (54.37%), Query Frame = 0 

Query: 10  NAYISNSVLHGRAEDSTIAFIEPLRVGGKADSIMSAF-LNAYSEKLGWVHGCQLHGFIIR 69
           N+ I      G   ++ + F+  +  G   D     F L+A ++     +G Q+HG I++
Sbjct: 103 NSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVK 162

Query: 70  SGCAQNVSVSNGLIAFYGKCGEVECSEMNGRAEEKMPVRNLVSWNTLLGGYADK-----A 129
            G A+++ V N L+ FY +CGE++ +    +  ++M  RN+VSW +++ GYA +     A
Sbjct: 163 MGYAKDLFVQNSLVHFYAECGELDSAR---KVFDEMSERNVVSWTSMICGYARRDFAKDA 222

Query: 130 VALLEEMASMVGMAPSYVSLVCALSACSRAGDLKMGMQIF 164
           V L   M     + P+ V++VC +SAC++  DL+ G +++
Sbjct: 223 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259

[Close]
BLAST of Carg17421 vs. TAIR10
Match: AT1G68930.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 56/168 (33.33%), Postives = 86/168 (51.19%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADS-IMSAFLNAYSEKLGWVHG 60
           M  +N+ +  A +      GRAE++   F++  R G   D   +   ++A +       G
Sbjct: 331 MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG 390

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSEMNGRAEEKMPVRNLVSWNTLLGGY 120
            Q HG  I SG    V+VSN L+  YGKCG+++ S    R   +M VR+ VSW  ++  Y
Sbjct: 391 SQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDST---RLFNEMNVRDAVSWTAMVSAY 450

Query: 121 AD--KAVALLEEMASMV--GMAPSYVSLVCALSACSRAGDLKMGMQIF 164
           A   +AV  ++    MV  G+ P  V+L   +SACSRAG ++ G + F
Sbjct: 451 AQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYF 495

[Close]
BLAST of Carg17421 vs. TAIR10
Match: AT3G02010.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 6.2e-16
Identity = 57/168 (33.93%), Postives = 83/168 (49.40%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKAD-SIMSAFLNAYSEKLGWVHG 60
           +P R   +  A IS  V  G        F +      +AD S  +  L A +     + G
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLG 471

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSEMNGRAEEKMPVRNLVSWNTLLGGY 120
            QLH FIIRSG  +NV   +GL+  Y KCG ++ +    +  E+MP RN VSWN L+  +
Sbjct: 472 KQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAV---QVFEEMPDRNAVSWNALISAH 531

Query: 121 ADK--AVALLEEMASMV--GMAPSYVSLVCALSACSRAGDLKMGMQIF 164
           AD     A +   A M+  G+ P  VS++  L+ACS  G ++ G + F
Sbjct: 532 ADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYF 576

[Close]
BLAST of Carg17421 vs. TAIR10
Match: AT5G50390.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 6.2e-16
Identity = 51/169 (30.18%), Postives = 85/169 (50.30%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSIMSAFLNAYSEKLGWVH-G 60
           MP +     N  I+   LHG +E++     +    G   D    + +   S KL  +   
Sbjct: 285 MPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELT 344

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSEMNGRAEEKMPVRNLVSWNTLLGGY 120
            Q H  +IR+G    +  +  L+ FY K G V+ +       +K+P +N++SWN L+GGY
Sbjct: 345 KQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARY---VFDKLPRKNIISWNALMGGY 404

Query: 121 AD-----KAVALLEEMASMVGMAPSYVSLVCALSACSRAGDLKMGMQIF 164
           A+      AV L E+M +   +AP++V+ +  LSAC+ +G  + G +IF
Sbjct: 405 ANHGRGTDAVKLFEKMIA-ANVAPNHVTFLAVLSACAYSGLSEQGWEIF 449

[Close]
BLAST of Carg17421 vs. Swiss-Prot
Match: sp|Q0WSH6|PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana OX=3702 GN=LOI1 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-23
Identity = 90/271 (33.21%), Postives = 117/271 (43.17%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSI-MSAFLNAYSEKLGWVH- 60
           +P RNLET NA+ISNSV  GR  ++  AFIE  R+ G  +SI   AFLNA S+   W+H 
Sbjct: 169 IPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSD---WLHL 228

Query: 61  --GCQLHGFIIRSGCAQNVSVSNGLIAFYGKC---------------------------- 120
             G QLHG ++RSG   +VSV NGLI FYGKC                            
Sbjct: 229 NLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAY 288

Query: 121 ------------------------------------------------------------ 164
                                                                       
Sbjct: 289 VQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTI 348

[Close]
BLAST of Carg17421 vs. Swiss-Prot
Match: sp|Q9LUJ2|PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-15
Identity = 47/160 (29.38%), Postives = 87/160 (54.37%), Query Frame = 0 

Query: 10  NAYISNSVLHGRAEDSTIAFIEPLRVGGKADSIMSAF-LNAYSEKLGWVHGCQLHGFIIR 69
           N+ I      G   ++ + F+  +  G   D     F L+A ++     +G Q+HG I++
Sbjct: 103 NSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVK 162

Query: 70  SGCAQNVSVSNGLIAFYGKCGEVECSEMNGRAEEKMPVRNLVSWNTLLGGYADK-----A 129
            G A+++ V N L+ FY +CGE++ +    +  ++M  RN+VSW +++ GYA +     A
Sbjct: 163 MGYAKDLFVQNSLVHFYAECGELDSAR---KVFDEMSERNVVSWTSMICGYARRDFAKDA 222

Query: 130 VALLEEMASMVGMAPSYVSLVCALSACSRAGDLKMGMQIF 164
           V L   M     + P+ V++VC +SAC++  DL+ G +++
Sbjct: 223 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259

[Close]
BLAST of Carg17421 vs. Swiss-Prot
Match: sp|Q9CAA8|PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-15
Identity = 56/168 (33.33%), Postives = 86/168 (51.19%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADS-IMSAFLNAYSEKLGWVHG 60
           M  +N+ +  A +      GRAE++   F++  R G   D   +   ++A +       G
Sbjct: 331 MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG 390

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSEMNGRAEEKMPVRNLVSWNTLLGGY 120
            Q HG  I SG    V+VSN L+  YGKCG+++ S    R   +M VR+ VSW  ++  Y
Sbjct: 391 SQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDST---RLFNEMNVRDAVSWTAMVSAY 450

Query: 121 AD--KAVALLEEMASMV--GMAPSYVSLVCALSACSRAGDLKMGMQIF 164
           A   +AV  ++    MV  G+ P  V+L   +SACSRAG ++ G + F
Sbjct: 451 AQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYF 495

[Close]
BLAST of Carg17421 vs. Swiss-Prot
Match: sp|Q9S7F4|PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H36 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 57/168 (33.93%), Postives = 83/168 (49.40%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKAD-SIMSAFLNAYSEKLGWVHG 60
           +P R   +  A IS  V  G        F +      +AD S  +  L A +     + G
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLG 471

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSEMNGRAEEKMPVRNLVSWNTLLGGY 120
            QLH FIIRSG  +NV   +GL+  Y KCG ++ +    +  E+MP RN VSWN L+  +
Sbjct: 472 KQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAV---QVFEEMPDRNAVSWNALISAH 531

Query: 121 ADK--AVALLEEMASMV--GMAPSYVSLVCALSACSRAGDLKMGMQIF 164
           AD     A +   A M+  G+ P  VS++  L+ACS  G ++ G + F
Sbjct: 532 ADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYF 576

[Close]
BLAST of Carg17421 vs. Swiss-Prot
Match: sp|Q9FK33|PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 51/169 (30.18%), Postives = 85/169 (50.30%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSIMSAFLNAYSEKLGWVH-G 60
           MP +     N  I+   LHG +E++     +    G   D    + +   S KL  +   
Sbjct: 285 MPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELT 344

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSEMNGRAEEKMPVRNLVSWNTLLGGY 120
            Q H  +IR+G    +  +  L+ FY K G V+ +       +K+P +N++SWN L+GGY
Sbjct: 345 KQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARY---VFDKLPRKNIISWNALMGGY 404

Query: 121 AD-----KAVALLEEMASMVGMAPSYVSLVCALSACSRAGDLKMGMQIF 164
           A+      AV L E+M +   +AP++V+ +  LSAC+ +G  + G +IF
Sbjct: 405 ANHGRGTDAVKLFEKMIA-ANVAPNHVTFLAVLSACAYSGLSEQGWEIF 449

[Close]
BLAST of Carg17421 vs. TrEMBL
Match: tr|A0A0A0L4T8|A0A0A0L4T8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146650 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 4.7e-50
Identity = 133/267 (49.81%), Postives = 138/267 (51.69%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSI-MSAFLNAYSEKLGWVHG 60
           MPHRNLET NAYISNSVLHGR EDS IAFIE LRVGGK DSI   AFLNA S+KLG   G
Sbjct: 169 MPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLGPG 228

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSEM---------------------NG 120
           CQLHGFIIRSG  QNVSVSNGLI FYGKCGEVECSEM                       
Sbjct: 229 CQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQN 288

Query: 121 RAEEK------------------------------------------------------- 164
             EEK                                                       
Sbjct: 289 NEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVA 348

[Close]
BLAST of Carg17421 vs. TrEMBL
Match: tr|A0A1S3AXN0|A0A1S3AXN0_CUCME (pentatricopeptide repeat-containing protein At4g14850 OS=Cucumis melo OX=3656 GN=LOC103483708 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 9.8e-48
Identity = 129/267 (48.31%), Postives = 136/267 (50.94%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSI-MSAFLNAYSEKLGWVHG 60
           MP RNLET NAYI+NSVLHGR EDS IAFIE LRVG K DSI   AFLNA S+KLG   G
Sbjct: 169 MPQRNLETWNAYITNSVLHGRPEDSAIAFIELLRVGEKPDSITFCAFLNACSDKLGLGPG 228

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSEM---------------------NG 120
           CQLHGF+IRSG  QNVSVSNGLI FYGKCGEVECSEM                       
Sbjct: 229 CQLHGFVIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQN 288

Query: 121 RAEEK------------------------------------------------------- 164
             EEK                                                       
Sbjct: 289 NEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVA 348

[Close]
BLAST of Carg17421 vs. TrEMBL
Match: tr|A0A2G5DN36|A0A2G5DN36_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01700478v1 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27
Identity = 94/271 (34.69%), Postives = 124/271 (45.76%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSI-MSAFLNAYSEKLGWVHG 60
           MP RN+ T NAYISNSV+ GR +D+  AFIE  RVGG+ +SI   AFLNA S+    + G
Sbjct: 169 MPERNVATWNAYISNSVVDGRIDDAINAFIEFRRVGGEPNSITFCAFLNACSDTSDLLLG 228

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAF----------------------------------- 120
            QLHGF+IRSGC ++V V+NGL+ F                                   
Sbjct: 229 RQLHGFVIRSGCDKDVRVANGLVDFYGKNHQVEPAEVIFYEIREPNYVSWSSMVAAYVQN 288

Query: 121 ------------------------------------------------------------ 164
                                                                       
Sbjct: 289 DEEEKACVVFLKSRKEGVEPTDFMISSVLSACAGLARFELGMAVYCLGVKGCVDKNVYVG 348

[Close]
BLAST of Carg17421 vs. TrEMBL
Match: tr|A0A2G5CS48|A0A2G5CS48_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03900202v1 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 95/271 (35.06%), Postives = 123/271 (45.39%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSI-MSAFLNAYSEKLGWVHG 60
           MP RN+ T NAYISNSV+ GR  D+  AFIE  RVGG+ +SI   AFLNA S+    + G
Sbjct: 169 MPERNVATWNAYISNSVVDGRIYDAINAFIEFRRVGGEPNSITFCAFLNACSDTSDLLLG 228

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAF----------------------------------- 120
            QLHGF+IRSGC ++V V+NGL+ F                                   
Sbjct: 229 RQLHGFVIRSGCDKDVRVANGLVDFYGKNHQVEPAEVIFYEIREPNYVSWSSMVAAYVQN 288

Query: 121 ------------------------------------------------------------ 164
                                                                       
Sbjct: 289 DEEEKACVVFLKSKKEGVEPTDFMISSVLSACAGLAGLELGMAVHCLGVKGCVDENVYVG 348

[Close]
BLAST of Carg17421 vs. TrEMBL
Match: tr|A0A2I4GEW5|A0A2I4GEW5_9ROSI (pentatricopeptide repeat-containing protein At4g14850 OS=Juglans regia OX=51240 GN=LOC109007283 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 96/268 (35.82%), Postives = 120/268 (44.78%), Query Frame = 0 

Query: 1   MPHRNLETLNAYISNSVLHGRAEDSTIAFIEPLRVGGKADSI-MSAFLNAYSEKLGWVHG 60
           MP +N+ T NAY+SN+VL G+  ++  AFIE LRV GK DSI   AFLNA S+ L    G
Sbjct: 169 MPEKNIVTWNAYMSNAVLDGQPRNAVKAFIEFLRVDGKPDSITFCAFLNACSDALYLEPG 228

Query: 61  CQLHGFIIRSGCAQNVSVSNGLIAFYGKCGEVECSEM---------------------NG 120
            QLHGFIIRSG   +VS SNGLI FYGKC +V  SEM                       
Sbjct: 229 RQLHGFIIRSGFLADVSASNGLIDFYGKCRDVGSSEMVFDRMCQRNDVSWCSMVTAHLQN 288

Query: 121 RAEEK------------------------------------------------------- 164
             EEK                                                       
Sbjct: 289 YEEEKACMVFLQAREEGVEPTDYMISSVLSACAGLSGLELGRSVHALAVKACVEGNVFVG 348

The following BLAST results are available for this feature:
BLAST of Carg17421 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022979420.12.9e-5150.94pentatricopeptide repeat-containing protein At4g14850 [Cucurbita maxima] >XP_022... [more]
XP_022956070.11.1e-5049.81pentatricopeptide repeat-containing protein At4g14850 [Cucurbita moschata][more]
XP_004134445.17.1e-5049.81PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Cucumis sativu... [more]
XP_022137756.12.1e-4949.81pentatricopeptide repeat-containing protein At4g14850 [Momordica charantia][more]
XP_008438671.11.5e-4748.31PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Cucumis melo][more]
BLAST of Carg17421 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14850.15.6e-2533.21Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G22690.19.6e-1729.38Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repe... [more]
AT1G68930.11.3e-1633.33pentatricopeptide (PPR) repeat-containing protein[more]
AT3G02010.16.2e-1633.93Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G50390.16.2e-1630.18Pentatricopeptide repeat (PPR-like) superfamily protein[more]
BLAST of Carg17421 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q0WSH6|PP312_ARATH1.0e-2333.21Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana OX... [more]
sp|Q9LUJ2|PP249_ARATH1.7e-1529.38Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX... [more]
sp|Q9CAA8|PP108_ARATH2.3e-1533.33Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis th... [more]
sp|Q9S7F4|PP206_ARATH1.1e-1433.93Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis th... [more]
sp|Q9FK33|PP427_ARATH1.1e-1430.18Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidop... [more]
BLAST of Carg17421 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L4T8|A0A0A0L4T8_CUCSA4.7e-5049.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146650 PE=4 SV=1[more]
tr|A0A1S3AXN0|A0A1S3AXN0_CUCME9.8e-4848.31pentatricopeptide repeat-containing protein At4g14850 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2G5DN36|A0A2G5DN36_AQUCA1.9e-2734.69Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01700478v1 PE=4... [more]
tr|A0A2G5CS48|A0A2G5CS48_AQUCA2.5e-2735.06Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03900202v1 PE=4... [more]
tr|A0A2I4GEW5|A0A2I4GEW5_9ROSI1.6e-2635.82pentatricopeptide repeat-containing protein At4g14850 OS=Juglans regia OX=51240 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17421-RACarg17421-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 5..163
e-value: 2.5E-15
score: 58.7
NoneNo IPR availablePANTHERPTHR24015:SF116SUBFAMILY NOT NAMEDcoord: 24..163
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 24..163

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17421CmaCh06G014080Cucurbita maxima (Rimu)carcmaB0849
Carg17421Lsi05G016070Bottle gourd (USVL1VR-Ls)carlsiB551
Carg17421Cla97C05G086320Watermelon (97103) v2carwmbB0631
Carg17421Bhi01G000582Wax gourdcarwgoB0722
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg17421Carg23519Silver-seed gourdcarcarB545
The following block(s) are covering this gene:
GeneOrganismBlock
Carg17421Silver-seed gourdcarcarB347
Carg17421Cucumber (Gy14) v2carcgybB0605
Carg17421Cucumber (Gy14) v1carcgyB0681
Carg17421Cucurbita maxima (Rimu)carcmaB0847
Carg17421Cucurbita maxima (Rimu)carcmaB0850
Carg17421Cucurbita moschata (Rifu)carcmoB0823
Carg17421Cucurbita moschata (Rifu)carcmoB0824
Carg17421Cucurbita moschata (Rifu)carcmoB0825
Carg17421Cucurbita moschata (Rifu)carcmoB0826
Carg17421Cucurbita pepo (Zucchini)carcpeB0857
Carg17421Cucurbita pepo (Zucchini)carcpeB0858
Carg17421Cucurbita pepo (Zucchini)carcpeB0860
Carg17421Cucurbita pepo (Zucchini)carcpeB0861
Carg17421Wild cucumber (PI 183967)carcpiB0639
Carg17421Cucumber (Chinese Long) v2carcuB0633
Carg17421Cucumber (Chinese Long) v3carcucB0640
Carg17421Bottle gourd (USVL1VR-Ls)carlsiB550
Carg17421Melon (DHL92) v3.5.1carmeB0610
Carg17421Melon (DHL92) v3.6.1carmedB0616
Carg17421Watermelon (Charleston Gray)carwcgB0588
Carg17421Watermelon (Charleston Gray)carwcgB0589
Carg17421Watermelon (97103) v1carwmB0603
Carg17421Watermelon (97103) v1carwmB0604
Carg17421Watermelon (97103) v2carwmbB0632