Carg17347 (gene) Silver-seed gourd

NameCarg17347
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUveal autoantigen with coiled-coil domains and ankyrin repeats isoform 4
LocationCucurbita_argyrosperma_scaffold_092 : 131088 .. 133228 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGCGATTGGGTTTTGGTTAAAAATTCAAATCTTGGACAAAACTCGTCCCCATCTCTCCTCTCATTGTTCTTCTTTCTCCCCCTCAATTCCCTCAAATTTTGAATTTTGATCTCCATTTCACCCTCACCCACCCTTTTTAAAACCCTAATTTTTCAACTCATCAGATTCTGAATCTCCATTTCAGGCCGATTCGATCCCTGCTTCAATGGCGAACGCCGACTCTTCCACTCCCTCCACCCCTGCCCCCGTTCCTACATCAGCCGTGAGTTCCCTTCATTCCTTCGTTTTCAGTTTCTCATTCATTCTGGCTTTCGGGCTTTATCAACTTTGTTGTTTTTGTTTCTTTCTTGTTCACAGAAGAAGGAGAATCTCACCCCCATTGGCTTGAAAATTATGGTATTGTTTTCTACAATGTGTTTATAATTCTTGAATTTAACTCCAATCTTAACAGATTTTGACTTGTCTCTTCTCAGGAATTGAACGAATCAAGAGCAGAGCTGCTTGATAGAATTCAATTTCTTAAGCAGGTGGAGTCTAAGATATAAAATGTCCTAGCTGTGAGATAAAGTTGGATGTTCTTGGTCATTTACTTGTTTTTGTGCTCTGATTTTGTGAACTTTCCTTGTGTTTGAGCATTTCAGGATCTCCAGAATTGGAGGTTAAAGCTAGACACACAAGTTAATACCTACCGAAGTGTAAGTTAATAATGTATTGCTTGTTTTCTTCATTCTTTTCTTTGTATTCATATCTTTCTTAAAAGTAGGCTTATCTCTGTCAGAATGCCTTGTTCTAAGATATCTGTGTTTTAGTTTTCTTTGATGGGTCTATATGATCCATAAACAAGTTGGTCATCCAAATGGAGTGTTTGAAGATTGGATCCTGTGGCTTATACTGTGAGATCCACCTTAGTTAGGAGGAGAACGAATCATTCTTTATAAGGGTGTGGAAACCACTCCCTAGAAGAGACGTTTTAAAAACCTTGAGGAGAAGCCCAAAAGGAAAACCCAAAGATGACAAATATCTACTAGCGGTGGGCTTGGGCCGTTACAAATGGTATTAGAGCCAGATAACGGGCGATGTGCCAATAAGGACATTGGGCTCTAAAGGGGGTGGATTGGGAGGTCTTACAAATCTTGAGGGGAAGCCCGAAAGGGAAAGCTCAAAGAGGACAATATCTGATAGCGGTGAGCTTGGACTGTTACAATATCAGTTAACTGATTCTTGGTAGTTCGAAAAGGGTTTCGAGTCTGCTAATGTTTCCAGCAGAGGATACTTGATCCCTCAATACCTTGGTTTAGAAGGGAAAAAAAAGAACATATGATATTAATGACCCTTTTGTTGGTCACGCATATTCCTGTTCTTTTCTGCTTTTGTATCTGTTTCTCCAGCATCACTTGACATAGGCATTCAATTCTCATACAGGAACTGTCTGAACTCAAGAAATCGCTCAACGTTGAGGTGGAGCAACTTCGCACGGTAAGCCAAATGCTTCACTCAGATTGAATGTGCTAAGGGTAATAAATTTGTGGCATGAAAGCAGGAATTCAGAGAACTAAGGACAACCCTTCAGCAGCAACAAGAAGATGTGACAACTAGCCTGAGGAACTTGGGTGTAAGTTCTAATTCTAATGACTTTCATACTCAACAAAATACCTCCAACCCGCCTCGTCCCACCGTATGTTTTCAACAGCCATTGAAGAAAATTTATGAATCCTGGCAGGTTCAGGATGATTCTAAGGACAACAACAAGACTCGACATCAACATCCTGTAGCGGAAAGCAGCGACAAGGAAGACGAAGACGAGGGTAAGAAGGATGGACTCCATGGCTTAACAGAGGGTAAGGGAAATGAAGCTGAAAATTAAGAGAATTTCCATTGTGTTCGTAATGTGGCGATGGATTTCCACGTTTGACTGTTTTTCAAAGCTTTGTAATGGGATTGATAAGATTTTCCCGGCATTTAAGGAAGCATTGAATTTGTAAGTGTAATTTTTTACACGCACATCAACATTAATAAGTTCATTCTTCAAGGATATATGTATTTAATTTTTGGGAAGCAGGGCTGGTGGTATCGATTTTTTTCTCAACTAGCAAATTGGACTACTCAAAGGCTCCTATTTATATTCCTTTGTGGGTTCATA

mRNA sequence

GAGCGATTGGGTTTTGGTTAAAAATTCAAATCTTGGACAAAACTCGTCCCCATCTCTCCTCTCATTGTTCTTCTTTCTCCCCCTCAATTCCCTCAAATTTTGAATTTTGATCTCCATTTCACCCTCACCCACCCTTTTTAAAACCCTAATTTTTCAACTCATCAGATTCTGAATCTCCATTTCAGGCCGATTCGATCCCTGCTTCAATGGCGAACGCCGACTCTTCCACTCCCTCCACCCCTGCCCCCGTTCCTACATCAGCCAAGAAGGAGAATCTCACCCCCATTGGCTTGAAAATTATGGAATTGAACGAATCAAGAGCAGAGCTGCTTGATAGAATTCAATTTCTTAAGCAGGATCTCCAGAATTGGAGGTTAAAGCTAGACACACAAGTTAATACCTACCGAAGTGAACTGTCTGAACTCAAGAAATCGCTCAACGTTGAGGTGGAGCAACTTCGCACGGAATTCAGAGAACTAAGGACAACCCTTCAGCAGCAACAAGAAGATGTGACAACTAGCCTGAGGAACTTGGGTGTTCAGGATGATTCTAAGGACAACAACAAGACTCGACATCAACATCCTGTAGCGGAAAGCAGCGACAAGGAAGACGAAGACGAGGGTAAGAAGGATGGACTCCATGGCTTAACAGAGGGTAAGGGAAATGAAGCTGAAAATTAAGAGAATTTCCATTGTGTTCGTAATGTGGCGATGGATTTCCACGTTTGACTGTTTTTCAAAGCTTTGTAATGGGATTGATAAGATTTTCCCGGCATTTAAGGAAGCATTGAATTTGTAAGTGTAATTTTTTACACGCACATCAACATTAATAAGTTCATTCTTCAAGGATATATGTATTTAATTTTTGGGAAGCAGGGCTGGTGGTATCGATTTTTTTCTCAACTAGCAAATTGGACTACTCAAAGGCTCCTATTTATATTCCTTTGTGGGTTCATA

Coding sequence (CDS)

ATGGCGAACGCCGACTCTTCCACTCCCTCCACCCCTGCCCCCGTTCCTACATCAGCCAAGAAGGAGAATCTCACCCCCATTGGCTTGAAAATTATGGAATTGAACGAATCAAGAGCAGAGCTGCTTGATAGAATTCAATTTCTTAAGCAGGATCTCCAGAATTGGAGGTTAAAGCTAGACACACAAGTTAATACCTACCGAAGTGAACTGTCTGAACTCAAGAAATCGCTCAACGTTGAGGTGGAGCAACTTCGCACGGAATTCAGAGAACTAAGGACAACCCTTCAGCAGCAACAAGAAGATGTGACAACTAGCCTGAGGAACTTGGGTGTTCAGGATGATTCTAAGGACAACAACAAGACTCGACATCAACATCCTGTAGCGGAAAGCAGCGACAAGGAAGACGAAGACGAGGGTAAGAAGGATGGACTCCATGGCTTAACAGAGGGTAAGGGAAATGAAGCTGAAAATTAA

Protein sequence

MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLDTQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNLGVQDDSKDNNKTRHQHPVAESSDKEDEDEGKKDGLHGLTEGKGNEAEN
BLAST of Carg17347 vs. NCBI nr
Match: XP_022948034.1 (CAP-Gly domain-containing linker protein 1-like [Cucurbita moschata])

HSP 1 Score: 96.7 bits (239), Expect = 7.6e-17
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0

Query: 1   MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLXXXXXXXXXXXX 60
           MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLXXXXXXXXXXXX
Sbjct: 1   MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXEGKKDGLHGLTEGKGNEAEN 158
           XXXXXXXXXXXXXXXXXEGKKDGLHGLTEGKGNEAEN
Sbjct: 121 XXXXXXXXXXXXXXXXXEGKKDGLHGLTEGKGNEAEN 157

BLAST of Carg17347 vs. NCBI nr
Match: XP_023539906.1 (CAP-Gly domain-containing linker protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 153/157 (97.45%), Postives = 154/157 (98.09%), Query Frame = 0

Query: 1   MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLXXXXXXXXXXXX 60
           MA+ADSSTPSTPAP PTSAKKENLTPIGLKIMELNESRAELLDRIQF XXXXXXXXXXXX
Sbjct: 1   MASADSSTPSTPAPAPTSAKKENLTPIGLKIMELNESRAELLDRIQFXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXEGKKDGLHGLTEGKGNEAEN 158
           XXXXXXXXXXXXXXXXXEGKKDGLHGLTEGKGNE EN
Sbjct: 121 XXXXXXXXXXXXXXXXXEGKKDGLHGLTEGKGNEYEN 157

BLAST of Carg17347 vs. NCBI nr
Match: XP_022973788.1 (uncharacterized protein LOC111472345 [Cucurbita maxima] >XP_022975171.1 uncharacterized protein LOC111474206 [Cucurbita maxima])

HSP 1 Score: 87.4 bits (215), Expect = 4.6e-14
Identity = 151/157 (96.18%), Postives = 152/157 (96.82%), Query Frame = 0

Query: 1   MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLXXXXXXXXXXXX 60
           MANADSSTPSTPAP P SAKKENLTPIGLKIMELNESRAELLDRIQFL XXXXXXXXXXX
Sbjct: 1   MANADSSTPSTPAPAPMSAKKENLTPIGLKIMELNESRAELLDRIQFLKXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXEGKKDGLHGLTEGKGNEAEN 158
           XXXXXXXXXXXXXXXX EGKKDGLHGLTE KGNEAE+
Sbjct: 121 XXXXXXXXXXXXXXXXDEGKKDGLHGLTECKGNEAEH 157

BLAST of Carg17347 vs. NCBI nr
Match: XP_022137849.1 (uncharacterized protein LOC111009183 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 4.5e-09
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 1  MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFL 49
          MA+ADS TPS PAP P SA+KENLTPIG KI ELNESRAEL  RIQFL
Sbjct: 1  MADADSPTPSVPAPSPLSARKENLTPIGAKITELNESRAELHSRIQFL 48

BLAST of Carg17347 vs. NCBI nr
Match: XP_002315556.2 (uncharacterized protein LOC7475952 [Populus trichocarpa] >PNT14319.1 hypothetical protein POPTR_010G024600v3 [Populus trichocarpa])

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-06
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 1  MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFL 49
          MAN+DSST +  AP+P + KKEN+TPIG KI ELNESR ELL+RIQ L
Sbjct: 1  MANSDSSTATLSAPLPLARKKENVTPIGSKIAELNESRTELLNRIQGL 48

BLAST of Carg17347 vs. TrEMBL
Match: tr|B9HSB7|B9HSB7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G024600v3 PE=4 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-06
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 1  MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFL 49
          MAN+DSST +  AP+P + KKEN+TPIG KI ELNESR ELL+RIQ L
Sbjct: 1  MANSDSSTATLSAPLPLARKKENVTPIGSKIAELNESRTELLNRIQGL 48

BLAST of Carg17347 vs. TrEMBL
Match: tr|A0A2K1YMT3|A0A2K1YMT3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G024600v3 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-06
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 1  MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFL 49
          MAN+DSST +  AP+P + KKEN+TPIG KI ELNESR ELL+RIQ L
Sbjct: 1  MANSDSSTATLSAPLPLARKKENVTPIGSKIAELNESRTELLNRIQGL 48

BLAST of Carg17347 vs. TrEMBL
Match: tr|B9RT40|B9RT40_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0680850 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.8e-06
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 1  MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFL 49
          MA +DSS P  P+P P + +KEN+TPIG KI ELNESR ELL+RIQ L
Sbjct: 1  MATSDSSIPPLPSPAPLAPRKENVTPIGSKIAELNESRTELLNRIQGL 48

BLAST of Carg17347 vs. TrEMBL
Match: tr|V4S7G5|V4S7G5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006148mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0

Query: 1  MANADS-STPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFL 49
          MAN +S STPS P   P   KKEN+TP+G KI ELNESRAELL+RIQ L
Sbjct: 1  MANVESDSTPSVPVSAPLVPKKENITPVGSKIAELNESRAELLNRIQGL 49

BLAST of Carg17347 vs. TrEMBL
Match: tr|A0A2N9IC75|A0A2N9IC75_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49353 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.4e-05
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 1  MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFL 49
          MAN+DSS P  P   P S +KEN+TP+G KI ELNESRAELL+RIQ L
Sbjct: 1  MANSDSS-PPLPQAAPLSLRKENITPVGSKIAELNESRAELLNRIQGL 47

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022948034.17.6e-17100.00CAP-Gly domain-containing linker protein 1-like [Cucurbita moschata][more]
XP_023539906.11.6e-1497.45CAP-Gly domain-containing linker protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022973788.14.6e-1496.18uncharacterized protein LOC111472345 [Cucurbita maxima] >XP_022975171.1 uncharac... [more]
XP_022137849.14.5e-0979.17uncharacterized protein LOC111009183 [Momordica charantia][more]
XP_002315556.22.7e-0668.75uncharacterized protein LOC7475952 [Populus trichocarpa] >PNT14319.1 hypothetica... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|B9HSB7|B9HSB7_POPTR1.8e-0668.75Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G024600v3 PE=... [more]
tr|A0A2K1YMT3|A0A2K1YMT3_POPTR1.8e-0668.75Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G024600v3 PE=... [more]
tr|B9RT40|B9RT40_RICCO6.8e-0664.58Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0680850 PE=4 SV=1[more]
tr|V4S7G5|V4S7G5_9ROSI2.0e-0567.35Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006148mg PE=4 ... [more]
tr|A0A2N9IC75|A0A2N9IC75_FAGSY4.4e-0566.67Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49353 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17347-RACarg17347-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..101
NoneNo IPR availableCOILSCoilCoilcoord: 31..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..112
NoneNo IPR availablePANTHERPTHR34681FAMILY NOT NAMEDcoord: 1..138
NoneNo IPR availableSUPERFAMILYSSF75704Mitotic arrest deficient-like 1, Mad1coord: 20..101

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg17347Carg20113Silver-seed gourdcarcarB544