Carg17306 (gene) Silver-seed gourd

Overview
NameCarg17306
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionChromatin modification-related protein EAF7
LocationCucurbita_argyrosperma_scaffold_135 : 486924 .. 489473 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGAAATCACGGGGAAGTTTCTAATTACGAAGTTCGGTTCAATCTGGAGGGAAAACAAGAAAAGAGGAAGAACTAAGACTAAAAACTCCGGCGAAGCATTTCTCTTCGACTAAGAACGTCTATTGCGATTGGCAGTTTCTTCATGGAAAGCGGCGGCAAAGGGAGAGATGAAGAACAAGACGGCATGTCTGTACACTCTCCATGCAAAGCTCCTCCGTCATCCGCTTCTTCTCTTCCCAAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTTCAGACATTGTCTTATGATCGCTGGAATTTGATTTTGTTCTTGTTTTTTGTATGCTGTGGTTAGGAGCAAGCACAGATTGAATTGGAACTCAAACTCTTGCAAGCTCTTGAAATTTATCCACTAGTCAAACTGCAAGGCAAGTTTGCTTTAACACTATTCTATCTGGTTCTTAATTGCATGTATTATCAAAACGTGAGTACGTCATTAGTTTTCGAGTCTGTTCGTCCTCAGCATCATGGTAGGAATTCTTGATTTTAATCAGTAAGTGAGAATCTAACCTATTGCCTAGTTGTGTGTTCAGTGATAATGATCAACTTCATACTGTTATTATTATTTTTTGTTGTCTGATCAAAAGTGGCATGGAGGACCAGAAATTACGAATGATGTAGCTATTCTTACGGTTGAGAAATGAGTGGAGGAGAGTAACGAGCAAATTAAAGTTGTCTTCCCGGGATGTCATTCAGTTTTTCACTTTAGGCTTTTACCGACTAAGAACAGGGAGGAAATGTTGTGAATTGAATATGCTATAATCAATAAAATCACCATCGAGAACTTAAGCTGTCAATTAGACTCGCAAGGAAGGAAATAAAACTTTGACGTATTTGCTAATGATACCAGATAATGGCATCTTGTTCATTAGTCTTTTCTTTTCCCTTCTACATACGAGCTTGCCGTCACTGAATTTTCGTTATTTTCATACAGGCATACATCGCCATTTTGTTCTCTTCGGGTTGATGGAGTTTCTAAGAAGAAGGTTTTCTCTGCCCCATGTACCACCTTCTTTCATCTTATTCAGCTTTTGACAAAAAAATCTAGTGGCTTCTACAATTTCTTCTGCATAATAATTTATTGGTTTACCATCTTCTTGCCACAGCTTTGATCGTCAGTTCTCTTCTGATGAAGTTCTACAGTTGTTGGATCGGTTCTATAACCTGGAAATGCTGGTAAAAAGAATCACTAACGCCTTGTTTTTTTTTTTTGGCTGCTGGCTCAATTTTATTTGAGAAGGAAGATAATCTAAATAGCATAAATATATAATCTAGAAAATTCACTTTTCTGTCCTTCACTTTTAGGAAAGAAAATGTAACCGCCCAAGCCCGCCGCTAACAGATATTACCTTCTTTGGGCTTTCATTTTCGGGCTTCCCGTCAAGGTTTTTAAAACGTGTTTGCTGGAGAGAGATTTCCACACCCTTATAAAGAATGTTTTGTTCTCCTCTCCAACTGATGCGGGATCTCACAATCCACCCTCCTTCAATGCCTAGTGTCCTCACTGGCATTCGTTCCTTTCTCCAATTGATGCGGAACCCCCCCAATCCTCCCCCTTCGGGGCTTATCGTCTTTGCTGGCATACTGCCTCGTGTCCATTCCCTTCCGGGCACAGCCTCCTTGCTGGCGCATCGCTTGGTGTCTGGCTCTAATACCATTTGTAACAACCTAAGCTCATCGCTAGCCAAATTATCCTCTTTCGGCTTTCTCTTTCGGGATTCCCTTTAAGGTTTTTAAAATATGTCTACTAAGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAAAAAAATTTACTAATTCCTAATAATCATACATCTTGTGGAGGGGCCGTGAATTTGTGACATGTTGGGGTACATACTAAGTAGAGCTCTGACCTCACATCTGACCTTATAGACCTCATATTCATCTTCTTTCTAAAGAAGATACTTTTCCAGATTGAGTAGGAAATATGTCTACAGCTTAGTTGACATATACAAATTTACATTTTGTAGTTAGAACCAAATAATGTGGGGGTGGCAAGTCTTATTTCTTTTCCACTCCTTAAGTCATCTTTTCTTGTCCTCCTGATAACTGATGAGATATATGTGCTAATATTGCTTTCCTCTCCATCACAATGCATTTCAGAAGCCAGACGATGAGGAAATGGAAATTCTGAATCACGAGGAAGATTTCTGCCTACCACAAACCTTCTTTGTCAAAGAAGAGTCTTAAGGGAAATTGTTCATATGGATGGTACCTTAGCCCTTCCTGGCATCTTTCTACTGTCGATCCCTTGTCGATCCCTTTTTGTTTTGTAAATGTCAATACAGAATCTTTTGCTGGATAGTATAATAAAAAAATTTCCTTTGTAAAGATGAATTCCTTAGTTTCTATACACGAGGGGTGTTCTCTGTTCCGCATGCCATACTTCCATTGAAATGCCCTCCAATCTAGGAGTTCACATTTTCTGTGTTTTT

mRNA sequence

CAGAAATCACGGGGAAGTTTCTAATTACGAAGTTCGGTTCAATCTGGAGGGAAAACAAGAAAAGAGGAAGAACTAAGACTAAAAACTCCGGCGAAGCATTTCTCTTCGACTAAGAACGTCTATTGCGATTGGCAGTTTCTTCATGGAAAGCGGCGGCAAAGGGAGAGATGAAGAACAAGACGGCATGTCTGTACACTCTCCATGCAAAGCTCCTCCGTCATCCGCTTCTTCTCTTCCCAAGGAGCAAGCACAGATTGAATTGGAACTCAAACTCTTGCAAGCTCTTGAAATTTATCCACTAGCATACATCGCCATTTTGTTCTCTTCGGGTTGATGGAGTTTCTAAGAAGAAGGTTTTCTCTGCCCCATCTTTGATCGTCAGTTCTCTTCTGATGAAGTTCTACAGTTGTTGGATCGGTTCTATAACCTGGAAATGCTGAAGCCAGACGATGAGGAAATGGAAATTCTGAATCACGAGGAAGATTTCTGCCTACCACAAACCTTCTTTGTCAAAGAAGAGTCTTAAGGGAAATTGTTCATATGGATGGTACCTTAGCCCTTCCTGGCATCTTTCTACTGTCGATCCCTTGTCGATCCCTTTTTGTTTTGTAAATGTCAATACAGAATCTTTTGCTGGATAGTATAATAAAAAAATTTCCTTTGTAAAGATGAATTCCTTAGTTTCTATACACGAGGGGTGTTCTCTGTTCCGCATGCCATACTTCCATTGAAATGCCCTCCAATCTAGGAGTTCACATTTTCTGTGTTTTT

Coding sequence (CDS)

ATGGAAAGCGGCGGCAAAGGGAGAGATGAAGAACAAGACGGCATGTCTGTACACTCTCCATGCAAAGCTCCTCCGTCATCCGCTTCTTCTCTTCCCAAGGAGCAAGCACAGATTGAATTGGAACTCAAACTCTTGCAAGCTCTTGAAATTTATCCACTAGCATACATCGCCATTTTGTTCTCTTCGGGTTGA

Protein sequence

MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPLAYIAILFSSG
Homology
[Close]
BLAST of Carg17306 vs. NCBI nr
Match: XP_022945110.1 (uncharacterized protein LOC111449449 [Cucurbita moschata] >XP_023541772.1 uncharacterized protein LOC111801826 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.2 bits (256), Expect = 3.3e-19
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 1  MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPL 54
          MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPL
Sbjct: 1  MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPL 53

[Close]
BLAST of Carg17306 vs. NCBI nr
Match: XP_022968533.1 (uncharacterized protein LOC111467738 [Cucurbita maxima])

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 1  MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPL 54
          MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQ+QIELELK+LQALEIYPL
Sbjct: 1  MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQSQIELELKILQALEIYPL 53

[Close]
BLAST of Carg17306 vs. NCBI nr
Match: XP_008446430.1 (PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPL 54
          MESGGKGR+EEQDG+SVHSPCKAPPSSASSLPKEQ QIELELKLLQALEIYPL
Sbjct: 1  MESGGKGREEEQDGISVHSPCKAPPSSASSLPKEQPQIELELKLLQALEIYPL 53

[Close]
BLAST of Carg17306 vs. NCBI nr
Match: XP_022956482.1 (uncharacterized protein LOC111458204 [Cucurbita moschata] >XP_022984147.1 uncharacterized protein LOC111482526 [Cucurbita maxima] >XP_023525987.1 uncharacterized protein LOC111789518 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPL 54
          MESGGKGR+EEQDG+SVHSPCKAPPSSASSLPKEQ QIELELKLLQALEIYPL
Sbjct: 1  MESGGKGREEEQDGISVHSPCKAPPSSASSLPKEQPQIELELKLLQALEIYPL 53

[Close]
BLAST of Carg17306 vs. NCBI nr
Match: XP_015894894.1 (uncharacterized protein LOC107428818 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 96.7 bits (239), Expect = 3.1e-17
Identity = 47/52 (90.38%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYP 53
          MESGGKGR+EEQDGMSVHSPCKAPPSSASSLPKEQ+Q+ELEL+LL+ALEIYP
Sbjct: 1  MESGGKGREEEQDGMSVHSPCKAPPSSASSLPKEQSQVELELRLLEALEIYP 52

[Close]
BLAST of Carg17306 vs. TAIR10
Match: AT1G26470.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 67.4 bits (163), Expect = 3.6e-12
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 13 DGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYP 53
          DG+SVHSPCKA PSSASSL KEQ+Q+ELEL+LL+ALEIYP
Sbjct: 20 DGLSVHSPCKALPSSASSLSKEQSQVELELRLLEALEIYP 59

[Close]
BLAST of Carg17306 vs. TrEMBL
Match: tr|A0A1S3BFV8|A0A1S3BFV8_CUCME (uncharacterized protein LOC103489178 OS=Cucumis melo OX=3656 GN=LOC103489178 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.0e-18
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPL 54
          MESGGKGR+EEQDG+SVHSPCKAPPSSASSLPKEQ QIELELKLLQALEIYPL
Sbjct: 1  MESGGKGREEEQDGISVHSPCKAPPSSASSLPKEQPQIELELKLLQALEIYPL 53

[Close]
BLAST of Carg17306 vs. TrEMBL
Match: tr|A0A0A0KQU2|A0A0A0KQU2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606640 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-17
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYPL 54
          MESGGKGR+EEQDG+SVHSPCKAPPSSASSLPKE  QIELELKLLQALEIYPL
Sbjct: 1  MESGGKGREEEQDGISVHSPCKAPPSSASSLPKEHPQIELELKLLQALEIYPL 53

[Close]
BLAST of Carg17306 vs. TrEMBL
Match: tr|A0A2P5CUE8|A0A2P5CUE8_9ROSA (Chromatin modification-related protein Eaf7/MRGBP OS=Trema orientalis OX=63057 GN=TorRG33x02_272730 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-16
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1  MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYP 53
          MESGGK R+EEQDGMSVHSPCKAPPSSASSLPKEQ+Q+ELEL+LL+ALEIYP
Sbjct: 1  MESGGKAREEEQDGMSVHSPCKAPPSSASSLPKEQSQVELELRLLEALEIYP 52

[Close]
BLAST of Carg17306 vs. TrEMBL
Match: tr|A0A2P5E296|A0A2P5E296_PARAD (Chromatin modification-related protein Eaf7/MRGBP OS=Parasponia andersonii OX=3476 GN=PanWU01x14_009010 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-16
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1  MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYP 53
          MESGGK R+EEQDGMSVHSPCKAPPSSASSLPKEQ+Q+ELEL+LL+ALEIYP
Sbjct: 1  MESGGKAREEEQDGMSVHSPCKAPPSSASSLPKEQSQVELELRLLEALEIYP 52

[Close]
BLAST of Carg17306 vs. TrEMBL
Match: tr|A0A2I4HUK4|A0A2I4HUK4_9ROSI (uncharacterized protein LOC109021631 isoform X1 OS=Juglans regia OX=51240 GN=LOC109021631 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.0e-16
Identity = 45/52 (86.54%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1  MESGGKGRDEEQDGMSVHSPCKAPPSSASSLPKEQAQIELELKLLQALEIYP 53
          M+SGGKGRDEEQDGMSVHSPCKAP SSASSLPKE++Q+ELEL+LL+ALEIYP
Sbjct: 3  MDSGGKGRDEEQDGMSVHSPCKAPLSSASSLPKEESQVELELRLLEALEIYP 54

The following BLAST results are available for this feature:
BLAST of Carg17306 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022945110.13.3e-19100.00uncharacterized protein LOC111449449 [Cucurbita moschata] >XP_023541772.1 unchar... [more]
XP_022968533.11.2e-1896.23uncharacterized protein LOC111467738 [Cucurbita maxima][more]
XP_008446430.11.1e-1794.34PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo][more]
XP_022956482.11.1e-1794.34uncharacterized protein LOC111458204 [Cucurbita moschata] >XP_022984147.1 unchar... [more]
XP_015894894.13.1e-1790.38uncharacterized protein LOC107428818 isoform X1 [Ziziphus jujuba][more]
BLAST of Carg17306 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26470.13.6e-1282.50FUNCTIONS IN: molecular_function unknown[more]
BLAST of Carg17306 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg17306 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BFV8|A0A1S3BFV8_CUCME7.0e-1894.34uncharacterized protein LOC103489178 OS=Cucumis melo OX=3656 GN=LOC103489178 PE=... [more]
tr|A0A0A0KQU2|A0A0A0KQU2_CUCSA2.6e-1792.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606640 PE=4 SV=1[more]
tr|A0A2P5CUE8|A0A2P5CUE8_9ROSA1.0e-1688.46Chromatin modification-related protein Eaf7/MRGBP OS=Trema orientalis OX=63057 G... [more]
tr|A0A2P5E296|A0A2P5E296_PARAD1.0e-1688.46Chromatin modification-related protein Eaf7/MRGBP OS=Parasponia andersonii OX=34... [more]
tr|A0A2I4HUK4|A0A2I4HUK4_9ROSI5.0e-1686.54uncharacterized protein LOC109021631 isoform X1 OS=Juglans regia OX=51240 GN=LOC... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17306-RACarg17306-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17306Cla000395Watermelon (97103) v1carwmB0097
Carg17306Csa5G606640Cucumber (Chinese Long) v2carcuB0108
Carg17306MELO3C012147Melon (DHL92) v3.5.1carmeB0101
Carg17306ClCG05G023750Watermelon (Charleston Gray)carwcgB0099
Carg17306CSPI05G24250Wild cucumber (PI 183967)carcpiB0113
Carg17306Cucsa.284560Cucumber (Gy14) v1carcgyB0122
Carg17306CmaCh04G016980Cucurbita maxima (Rimu)carcmaB0133
Carg17306CmaCh18G011100Cucurbita maxima (Rimu)carcmaB0131
Carg17306CmoCh04G017830Cucurbita moschata (Rifu)carcmoB0142
Carg17306CmoCh18G011320Cucurbita moschata (Rifu)carcmoB0140
Carg17306Lsi04G003670Bottle gourd (USVL1VR-Ls)carlsiB091
Carg17306Cp4.1LG09g02190Cucurbita pepo (Zucchini)carcpeB0146
Carg17306Cp4.1LG01g12050Cucurbita pepo (Zucchini)carcpeB0148
Carg17306CsGy5G023790Cucumber (Gy14) v2carcgybB0108
Carg17306MELO3C012147.2Melon (DHL92) v3.6.1carmedB0103
Carg17306CsaV3_5G033260Cucumber (Chinese Long) v3carcucB0117
Carg17306Cla97C05G105750Watermelon (97103) v2carwmbB0100
Carg17306Bhi07G001229Wax gourdcarwgoB0115
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg17306Carg14370Silver-seed gourdcarcarB110
The following block(s) are covering this gene:
GeneOrganismBlock
Carg17306Silver-seed gourdcarcarB114
Carg17306Silver-seed gourdcarcarB112
Carg17306Cucumber (Gy14) v2carcgybB0106
Carg17306Cucumber (Gy14) v1carcgyB0118
Carg17306Cucumber (Gy14) v1carcgyB0120
Carg17306Wild cucumber (PI 183967)carcpiB0111
Carg17306Cucumber (Chinese Long) v2carcuB0106
Carg17306Cucumber (Chinese Long) v3carcucB0115
Carg17306Bottle gourd (USVL1VR-Ls)carlsiB089
Carg17306Bottle gourd (USVL1VR-Ls)carlsiB093
Carg17306Melon (DHL92) v3.5.1carmeB0102
Carg17306Melon (DHL92) v3.5.1carmeB0103
Carg17306Melon (DHL92) v3.6.1carmedB0104
Carg17306Melon (DHL92) v3.6.1carmedB0105
Carg17306Watermelon (Charleston Gray)carwcgB0098
Carg17306Watermelon (Charleston Gray)carwcgB0101
Carg17306Watermelon (97103) v1carwmB0096
Carg17306Watermelon (97103) v1carwmB0099
Carg17306Watermelon (97103) v2carwmbB0099
Carg17306Watermelon (97103) v2carwmbB0102
Carg17306Watermelon (97103) v2carwmbB0103
Carg17306Wax gourdcarwgoB0114