Carg17277 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17277
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription termination factor like
Location	Cucurbita_argyrosperma_scaffold_135 : 323625 .. 327525 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTCTGTTCCACTTCTCTTCTTCATCGTCTTCCTCCACAGGAAACAAATCTTCGGTGTCTGAAATGATAAGCAGAGTCCAAAATCTTCCTCCATGGAATCTCTTCCTCTTTCCTCGGTCCTCAGCCCCATCTCTTAACCCTCTGAGAAACCCTAATTTCAGAAAACCTCGGTTCACCATTTCCCTCAATTCCCAATTCTCCGACCATTCCGACGCCGGCCTTCTTTTCCGGCAGAAGATACTCTACCTCGAGAATCACCTTCATGTCGATTTCCGGAAAGCATTCCGGGAAAACCCCGATTCTCGCTCCGCCACTCTCTCTGCCGTCAAGTCCGTTGAGGTTTGTCTCTCTTCCATGGGACTCGAGCTCTCTGCAGTCGGACGCGTCCTCGACATGTACCCTCAGCTTCTCACTTCAGACCCGGACTATGATCTTTATCCTATCTTCGATTTCCTTCTCAATGAGGTTCAAATTCCATTTCCCGACATTCGGAAATCCATAGTTCGATGTCCTAGACTTCTCGTCTCCGACTTGGACCTTCAATTGCGACCTGCGTTGAAGTTCTTGCGCGACCTAGGATTCGTTGGGTTGAATGCCATCACGTCCCAGACGACATTGCTACTGGTCTCGAGCGTTGAACATACGCTTCTACCCAAGATTCAGTACCTAGAAAATTTGGGCTTATCGCACAAGGATGTGGTTAATATGGTATTAAGGTCTCCGGCGTTGTTGACTTACAGCATTCAAAACAATTTGGTTCCTAAAGTGGATTATTTCTTAGGAGACATGAAGGGTGATTTATCGGAATTGAGAAGGTTTCCGCAATATTTTTCGTTTAGTTTGGAGAGAAAGATTAAACCGCGCCATCGTTTATTAGTTGAGCATGGATTGTCGCTTTCTTTGTCGAAAATGCTGAAGGTTAGTGATGGGGAGTTCACTGCAAGGCTGTTAGAAATGCGTTTGCAGTCGTCGACGGCAGATGGTTGAAGTGAGTTACTTGCTTCCTTTAGTTTCATAGTTTCTTCGGATGTGATTATTTATGAAACTATACGTCTATATTAGTGTATTTTCACTGTACATTCTAGAAAAGTAATTATAGAATCTTCAGTCTTTTGTTAAAATTGAAAGAGTATTTCACTTGATTACCTTGCTTATGGCTCTCTGCAATATAGAAGTGAGTTTGGCTGGACTTGAACAACGATGACTTAGAACCAGTGGCTTGTTACTGTCGACAACTACGTTGAATTATGGATGATAGCGAGTCCATCAATTGATTCGTAGTGTAGCTATGGAGTTAACTTTCAAGTGGTATTAGTAAGCTATGCGCATGTTTCATGTTGCTGCAGCCAGTAACAATTCACACAATCCATTTATAGGTAGTTGGCATTTGGACTTCTTTCACGATTTTGTTCGTCAAAGTCTTAGATTGGCGACCAAGTCCCTTATCCTTCTTGTTTCCAACGGAGGGGCCAACAGTCCCCATAGAAAGAAGTTAGGTATGAGGTTCAATTGGGTGTCAAGGTACTCTTTCCGTCTCCCGGTAAAGACAAAATCTGTGGTATTACTTTAAAAACCTCTAAATTTTTGGAAAAGCAATCGAGAAAGAAGTATGATCTATGATCTTCTGTTAGCCGACTCTCTAGCTCTTAATTCTTTGATAGAGACAGACCAACCGAAGTACTTCTTAAGTTCAGAATGTCAATATTTTTATGATGCAAGATCTTGATTGATGCTCAGCATCTGTACATTTTGTATTGACTGTCCAACTTTCTATGGAATGCCCTCTAGCTCACCATGTTTAACTAGGACTTTGAATCTCAAGAATTTGTAATCTTAGAACAAGCTTACGTGAATAGGATTTGTTTATACAACTGTGTCCTTTAGTACTAGTAACTTATAATTTTAGAAGTATCATTTGGGACAGTGATGATTACCTATCGTAAATGTTCGATGAAACCTATTTTCGATGATACCAACGCATCTTGTTTAACGACTCTTTTGGACGATCTTTTTAATTGTGGGATTGACAACGTATGCGGTGTTTTCACCAAATGGATTAGATCCTACATACCACAAGGACCTGTGGTTCTTCAAATGCTAAAACTTGTAGTCCTGGCATCTTGGTATTGAGATAAAAATGATCTTTTGTATATACAATTTACAATGCCTGTGTTTAATTAAGTGGTACACATGGTTGTATGCAACTTATTTGATAATAGGCCTTTCACTTATTTGATGCTTCTTATGAGCTGTCTGGCAACGGTGATTTAGTAGACGATGCTTCACTTGCAACAACGAAAATATATTCTGTGCTTTTCATTTATTGTATTTTTTTGCTTTGCAATGAAGTTCAACATGTTTTGTGTGAGATTCCATATCGGTTGGAGAGGGGAACGAAAAATTCTTTATAAGGGTGTGAAAACCTCTCTCTAGTAGACGCGTTTTAAAAACAAAATTTTTTTGGGAAAAACTCGAAAGAGAAAGCTCAAAGAGGATAATATCTGCTAGCGGTGAGCTTGAACGGTTTCATTTAGAGAATTAATCAGATGGTCACAGTCGAGTAGATGGGGGTGAGGAAAGAGTTTGCATTGCCTCCAAATATCTATTATTGTTTCTATTATTGAACTGGAATCCCCATCTGTCCCACACACACGTGCTGCTATATGAAATCCTGGATGAATATCGCTGGTGTTAGTTTATGTCAACTTTTTCCTTCCTTCGTGCAGGAACTGTGATTGAAATGATCTTACATCTCAATCGACAGGAGCAGGCATTGCACCATGTTCATCTGTTAATGCAGGCCTTCACTATTTAACTTGATTGGAGTTATTTACAAGATTGTACCCATCTTGAGAGAGATCATCAGTCAGAATGTTTGCTGTTTGAACAGAGAATACCCAAAATACAAAGCCTCAGCACGTCCGCAATTACCACCATTTGTTGATGCAATGCAGTCCCTGACTACCGTAGTTGGTTGGTTTGAGAGACTTGCAAGGTTGGCCCCATTGCAAATCACATCATCACATCTGAAATGTAATTTCCTGTTATCATTACAAGAACTCTCAACTTTTATATTCTAATACCTTGGTCTCATTGTTTGAAATTCATCAGAAAGAACATGTCGTTGGATTTGCTAAAGGCTCAAACTTTAAGGAAGAAAGGGACAGGTGAACCCCCAAATCAAATGGTAAGGCAATGCCAATCTCTGGCTCATTAATGTTGGACAAGAAATTTTATTTCTAGTGGAAGAAAGTTAGTGGGAAAATGGAACAAGATATTGTTCCACCAAAGTTAGAAATAATGAGAGATTTCATAATGCGTGATGATTCATTTGGTTGTTGAAACATGAGCCGTGCAACCCGGTTTCTTGTTGCAGAGATGCATCAATGTCGCAATTCAGATTACAGGGTACGTTGTCCATTACATGGCAGATTTTGATGGGTACAGTTTGTGAGAGGGCCTATCTCTTTCTCTGTTTCTCGGGACAGCAAATGCAAATTGGGGTCTGCAGTCGTCACCCTCTGGACCCTTTTTTTCTCCTTACAATCAATTTGCTCAGACACAGAGGGAGAGGGGATCCTGTCCCATTCTTTAATCATTCACCCTCGAAGGATGGGATGAATTTTGATTTGAAATTCATGGTCTTCATTTAATTCTGTCTCTACACAGTATTCATACATTATGGATCTGTTCTGGCTGCTTGTCTCTAACACAGATCTGATTCACAGGAGAACGAATGTTCTGCAGAAGTTAAGTTGGTTACACTTATATTGTGCATTTGATATCATTAGCTTAGTTTATACATCAGGCGTTGAAATGGAAGTGATTTTGGTTTTGGGTATTTGCTATTTGTTTGTTTTCTGCATTGAAGAGTACCCTTCGCACTACCATTAGTTTCC

mRNA sequence

AAATTCTGTTCCACTTCTCTTCTTCATCGTCTTCCTCCACAGGAAACAAATCTTCGGTGTCTGAAATGATAAGCAGAGTCCAAAATCTTCCTCCATGGAATCTCTTCCTCTTTCCTCGGTCCTCAGCCCCATCTCTTAACCCTCTGAGAAACCCTAATTTCAGAAAACCTCGGTTCACCATTTCCCTCAATTCCCAATTCTCCGACCATTCCGACGCCGGCCTTCTTTTCCGGCAGAAGATACTCTACCTCGAGAATCACCTTCATGTCGATTTCCGGAAAGCATTCCGGGAAAACCCCGATTCTCGCTCCGCCACTCTCTCTGCCGTCAAGTCCGTTGAGGTTTGTCTCTCTTCCATGGGACTCGAGCTCTCTGCAGTCGGACGCGTCCTCGACATGTACCCTCAGCTTCTCACTTCAGACCCGGACTATGATCTTTATCCTATCTTCGATTTCCTTCTCAATGAGGTTCAAATTCCATTTCCCGACATTCGGAAATCCATAGTTCGATGTCCTAGACTTCTCGTCTCCGACTTGGACCTTCAATTGCGACCTGCGTTGAAGTTCTTGCGCGACCTAGGATTCGTTGGGTTGAATGCCATCACGTCCCAGACGACATTGCTACTGGTCTCGAGCGTTGAACATACGCTTCTACCCAAGATTCAGTACCTAGAAAATTTGGGCTTATCGCACAAGGATGTGGTTAATATGGTATTAAGGTCTCCGGCGTTGTTGACTTACAGCATTCAAAACAATTTGGTTCCTAAAGTGGATTATTTCTTAGGAGACATGAAGGGTGATTTATCGGAATTGAGAAGGTTTCCGCAATATTTTTCGTTTAGTTTGGAGAGAAAGATTAAACCGCGCCATCGTTTATTAGTTGAGCATGGATTGTCGCTTTCTTTGTCGAAAATGCTGAAGGTTAGTGATGGGGAGTTCACTGCAAGGCTGTTAGAAATGCGTTTGCAGTCGTCGACGGCAGATGGTTGAGAACTGTGATTGAAATGATCTTACATCTCAATCGACAGGAGCAGGCATTGCACCATGTTCATCTGTTAATGCAGGCCTTCACTATTTAACTTGATTGGAGTTATTTACAAGATTGTACCCATCTTGAGAGAGATCATCAGTCAGAATGTTTGCTGTTTGAACAGAGAATACCCAAAATACAAAGCCTCAGCACGTCCGCAATTACCACCATTTGTTGATGCAATGCAGTCCCTGACTACCGTAGTTGGTTGGTTTGAGAGACTTGCAAGAAAGAACATGTCGTTGGATTTGCTAAAGGCTCAAACTTTAAGGAAGAAAGGGACAGGTGAACCCCCAAATCAAATGGTAAGGCAATGCCAATCTCTGGCTCATTAATGTTGGACAAGAAATTTTATTTCTAGTGGAAGAAAGTTAGTGGGAAAATGGAACAAGATATTGTTCCACCAAAGTTAGAAATAATGAGAGATTTCATAATGCGTGATGATTCATTTGGTTGTTGAAACATGAGCCGTGCAACCCGGTTTCTTGTTGCAGAGATGCATCAATGTCGCAATTCAGATTACAGGGTACGTTGTCCATTACATGGCAGATTTTGATGGGTACAGTTTGTGAGAGGGCCTATCTCTTTCTCTGTTTCTCGGGACAGCAAATGCAAATTGGGGTCTGCAGTCGTCACCCTCTGGACCCTTTTTTTCTCCTTACAATCAATTTGCTCAGACACAGAGGGAGAGGGGATCCTGTCCCATTCTTTAATCATTCACCCTCGAAGGATGGGATGAATTTTGATTTGAAATTCATGGTCTTCATTTAATTCTGTCTCTACACAGTATTCATACATTATGGATCTGTTCTGGCTGCTTGTCTCTAACACAGATCTGATTCACAGGAGAACGAATGTTCTGCAGAAGTTAAGTTGGTTACACTTATATTGTGCATTTGATATCATTAGCTTAGTTTATACATCAGGCGTTGAAATGGAAGTGATTTTGGTTTTGGGTATTTGCTATTTGTTTGTTTTCTGCATTGAAGAGTACCCTTCGCACTACCATTAGTTTCC

Coding sequence (CDS)

ATGATAAGCAGAGTCCAAAATCTTCCTCCATGGAATCTCTTCCTCTTTCCTCGGTCCTCAGCCCCATCTCTTAACCCTCTGAGAAACCCTAATTTCAGAAAACCTCGGTTCACCATTTCCCTCAATTCCCAATTCTCCGACCATTCCGACGCCGGCCTTCTTTTCCGGCAGAAGATACTCTACCTCGAGAATCACCTTCATGTCGATTTCCGGAAAGCATTCCGGGAAAACCCCGATTCTCGCTCCGCCACTCTCTCTGCCGTCAAGTCCGTTGAGGTTTGTCTCTCTTCCATGGGACTCGAGCTCTCTGCAGTCGGACGCGTCCTCGACATGTACCCTCAGCTTCTCACTTCAGACCCGGACTATGATCTTTATCCTATCTTCGATTTCCTTCTCAATGAGGTTCAAATTCCATTTCCCGACATTCGGAAATCCATAGTTCGATGTCCTAGACTTCTCGTCTCCGACTTGGACCTTCAATTGCGACCTGCGTTGAAGTTCTTGCGCGACCTAGGATTCGTTGGGTTGAATGCCATCACGTCCCAGACGACATTGCTACTGGTCTCGAGCGTTGAACATACGCTTCTACCCAAGATTCAGTACCTAGAAAATTTGGGCTTATCGCACAAGGATGTGGTTAATATGGTATTAAGGTCTCCGGCGTTGTTGACTTACAGCATTCAAAACAATTTGGTTCCTAAAGTGGATTATTTCTTAGGAGACATGAAGGGTGATTTATCGGAATTGAGAAGGTTTCCGCAATATTTTTCGTTTAGTTTGGAGAGAAAGATTAAACCGCGCCATCGTTTATTAGTTGAGCATGGATTGTCGCTTTCTTTGTCGAAAATGCTGAAGGTTAGTGATGGGGAGTTCACTGCAAGGCTGTTAGAAATGCGTTTGCAGTCGTCGACGGCAGATGGTTGA

Protein sequence

MISRVQNLPPWNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRLQSSTADG

Homology

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BLAST of Carg17277 vs. NCBI nr
Match: XP_022945324.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita moschata] >XP_022945325.1 transcription termination factor MTEF1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 577.4 bits (1487), Expect = 2.9e-161
Identity = 305/307 (99.35%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 1   MISRVQNLPPWNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL 60
           M+SRVQNLPPWNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL
Sbjct: 1   MMSRVQNLPPWNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL 60

Query: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120
           YLENHL+VDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP
Sbjct: 61  YLENHLNVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFVGLNAIT 180

Query: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240
           SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300
           DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300

Query: 301 QSSTADG 308
           QSSTADG
Sbjct: 301 QSSTADG 307

[Close]

BLAST of Carg17277 vs. NCBI nr
Match: XP_023542512.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542513.1 transcription termination factor MTEF1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 575.5 bits (1482), Expect = 1.1e-160
Identity = 305/307 (99.35%), Postives = 305/307 (99.35%), Query Frame = 0


Query: 1   MISRVQNLPPWNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL 60
           MISRVQNLPPWNLFLFPRSSAPSL  LRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL
Sbjct: 1   MISRVQNLPPWNLFLFPRSSAPSLKVLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL 60

Query: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120
           YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP
Sbjct: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFVGLNAIT 180

Query: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240
           SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300
           DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300

Query: 301 QSSTADG 308
           QSSTADG
Sbjct: 301 QSSTADG 307

[Close]

BLAST of Carg17277 vs. NCBI nr
Match: XP_022968085.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita maxima] >XP_022968086.1 transcription termination factor MTEF1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 568.9 bits (1465), Expect = 1.0e-158
Identity = 302/307 (98.37%), Postives = 303/307 (98.70%), Query Frame = 0


Query: 1   MISRVQNLPPWNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL 60
           MISRVQNLPP N FLFPRSS PSLNP+RNPNFRKPRFTISLNSQFSDHSDAGL FRQKIL
Sbjct: 1   MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKIL 60

Query: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120
           YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP
Sbjct: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFVGLNAIT 180

Query: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240
           SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300
           DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300

Query: 301 QSSTADG 308
           QSSTADG
Sbjct: 301 QSSTADG 307

[Close]

BLAST of Carg17277 vs. NCBI nr
Match: XP_022151208.1 (transcription termination factor MTEF1, chloroplastic [Momordica charantia] >XP_022151209.1 transcription termination factor MTEF1, chloroplastic [Momordica charantia] >XP_022151210.1 transcription termination factor MTEF1, chloroplastic [Momordica charantia])

HSP 1 Score: 457.2 bits (1175), Expect = 4.3e-125
Identity = 237/313 (75.72%), Postives = 259/313 (82.75%), Query Frame = 0


Query: 1   MISRVQNLPPWNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDH------SDAGLL 60
           MISR+Q  PP  L LFPRSS PSL P  NPNFR PRFT+++N+QFS H      SD+G+L
Sbjct: 1   MISRLQFPPPCILLLFPRSSPPSLKPSGNPNFRSPRFTVTINTQFSGHSGTATSSDSGIL 60

Query: 61  FRQKILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQ 120
           FR+KILYLENHLHVD RKAF++NPDSRSATLSA+KSVEVCLSSMGLELSAVGRVLDMYPQ
Sbjct: 61  FREKILYLENHLHVDSRKAFQQNPDSRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQ 120

Query: 121 LLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFV 180
           LLTSDP+YDLYPIFDFLLNEV+IPFPDIRKSI+RCPR+         RP L FLR+LGFV
Sbjct: 121 LLTSDPEYDLYPIFDFLLNEVRIPFPDIRKSIIRCPRILVSDLDLQLRPTLLFLRNLGFV 180

Query: 181 GLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPK 240
           GLNAIT QTT+                      SHKDVVNMVLRSP LLTYSIQNNLVPK
Sbjct: 181 GLNAITCQTTMXXXXXXXXXXXXXXXXXXXXXXSHKDVVNMVLRSPGLLTYSIQNNLVPK 240

Query: 241 VDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTAR 300
           VDYFLGDMKGDL EL+RFPQYFSFSLERKIKPRHRLLVEHGLSLSLS+MLKVSDGEFTAR
Sbjct: 241 VDYFLGDMKGDLLELKRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSRMLKVSDGEFTAR 300

Query: 301 LLEMRLQSSTADG 308
           ++EMRLQS+TADG
Sbjct: 301 VIEMRLQSATADG 313

[Close]

BLAST of Carg17277 vs. NCBI nr
Match: XP_008446371.1 (PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo])

HSP 1 Score: 419.9 bits (1078), Expect = 7.7e-114
Identity = 222/307 (72.31%), Postives = 244/307 (79.48%), Query Frame = 0


Query: 1   MISRVQNLPP-WNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKI 60
           MISR+Q  PP   +F FP S A SL PL+NP+F KPRFT+SLN+QFSD SD+GLLFR+KI
Sbjct: 1   MISRLQLPPPSCFIFFFPPSLAGSLKPLKNPSFGKPRFTLSLNTQFSDRSDSGLLFREKI 60

Query: 61  LYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSD 120
           LYLENHL+VD RKAFRENP  RSA+LS +KSVEVCLSSMGL+ SAVGRVLDMYP+LLTS+
Sbjct: 61  LYLENHLNVDSRKAFRENPHCRSASLSTLKSVEVCLSSMGLDRSAVGRVLDMYPKLLTSN 120

Query: 121 PDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFVGLNAI 180
           PDYD+YPIFDFLLNEVQIPFPDI KSI+RCPR+         RPALKFLRDLGFVGL AI
Sbjct: 121 PDYDIYPIFDFLLNEVQIPFPDIHKSIIRCPRILVSDLDHQLRPALKFLRDLGFVGLKAI 180

Query: 181 TSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFL 240
           T QTT                       SH+DVVNMVLRSP LLTYSIQNNLVPKV+YFL
Sbjct: 181 TCQTTXXXXXXXXXXXXXXXXXXXXXXXSHEDVVNMVLRSPGLLTYSIQNNLVPKVNYFL 240

Query: 241 GDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMR 300
           GDMKGDL EL+ FPQYFSF+LERKIKPRHR LVEHGLSL LSKMLKVSDGEF A L EMR
Sbjct: 241 GDMKGDLLELKSFPQYFSFNLERKIKPRHRSLVEHGLSLPLSKMLKVSDGEFNAWLTEMR 300

Query: 301 LQSSTAD 307
            +S  AD
Sbjct: 301 CRSLMAD 307

[Close]

BLAST of Carg17277 vs. TAIR10
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 253.1 bits (645), Expect = 2.3e-67
Identity = 139/256 (54.30%), Postives = 176/256 (68.75%), Query Frame = 0


Query: 49  SDAGLLFRQKILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRV 108
           SD G+LFR+K++YL++ L+VD  KA R NP  RSA +S+V SVE  LSS GL   AVGR+
Sbjct: 26  SDTGILFREKLIYLQD-LNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRI 85

Query: 109 LDMYPQLLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFL 168
           LDM+P LLTSDP+ ++ P+  FL NE+ I   DI KSI RCPRL         RPAL FL
Sbjct: 86  LDMFPDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFL 145

Query: 169 RDLGFVGLNAITSQTTLLLVSSVEHTLLPKIQYL-ENLGLSHKDVVNMVLRSPALLTYSI 228
           + LGFVG + ITS+ T+LLVS+VE TL+PKI+YL E LG + ++V  MV+          
Sbjct: 146 KTLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVXXXXXXXXXX 205

Query: 229 QNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVS 288
                         M+GD+ EL+RFPQYFSFSLERKIKPRHRLL EHG+ + LS+MLKVS
Sbjct: 206 XXXXXXXXXXXXXXMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVS 265

Query: 289 DGEFTARLLEMRLQSS 304
           DG+F   LLE+RL+S+
Sbjct: 266 DGQFNHWLLELRLRSA 280

[Close]

BLAST of Carg17277 vs. TAIR10
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 132.9 bits (333), Expect = 3.4e-31
Identity = 95/239 (39.75%), Postives = 128/239 (53.56%), Query Frame = 0


Query: 53  LLFRQKILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMY 112
           L  ++KIL LE  + +D  KA   NP   SA L +++SV   L S G+  + + R+L M 
Sbjct: 53  LQMKEKILCLE-LMGIDSGKALSLNPCLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMC 112

Query: 113 PQLLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLG 172
           P++LTSD   +LYP+F FL N++ +P              XXXXXXXXX       + LG
Sbjct: 113 PKILTSDVRTELYPVFMFLSNDLHVPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRLG 172

Query: 173 FVGLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLV 232
              L A+  Q                                M+LR PAL T+SI+NN  
Sbjct: 173 LKDLEALAYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMILRCPALFTFSIENNFK 232

Query: 233 PKVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEF 292
           PK+DYF+ ++KG L  L+ FPQYF+FSLE++IKPRH   +E GL L LS MLK +D EF
Sbjct: 233 PKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEF 290

[Close]

BLAST of Carg17277 vs. TAIR10
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-29
Identity = 84/260 (32.31%), Postives = 139/260 (53.46%), Query Frame = 0


Query: 40  SLNSQFSDHSDAGLLFRQKILYLENHLHVDFRKAFRENP--DSRSATLSAVKSVEVCLSS 99
           S +S  S  S   L  + +  + EN  H+       +NP     +  LS + S    L S
Sbjct: 15  SFSSPPSPSSSKPLYLKFQTSHRENLRHLSSLGIVPQNPRLAPPANDLSVILSAVNLLKS 74

Query: 100 MGLELSAVGRVLDMYPQLLTSDPDYD---LYPIFDFLLNEVQIPFPDIRKSIVRCPRLXX 159
            G+      R++ + PQL +  P +D   L P+FDFL  E+     + R  IV CP +  
Sbjct: 75  KGISDEDFPRLVFLCPQLFS--PTFDISKLDPVFDFLTGELGASAEESRGLIVNCPNILF 134

Query: 160 XXXXXXXRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVN 219
                  RP L +L++LG   LN  +     +L + VE  L  K+++L+++G  H++   
Sbjct: 135 SDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVE-KLRAKMRFLKSIGFEHEEAAR 194

Query: 220 MVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEH 279
           +  R PA+  YS+++NL PK ++ + DM+ +L EL++FPQYF+FSL ++I+PRH  L + 
Sbjct: 195 VCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLKKK 254

Query: 280 GLSLSLSKMLKVSDGEFTAR 295
            + +SLS+ML   D +F ++
Sbjct: 255 NVRVSLSRMLMWGDQKFYSK 271

[Close]

BLAST of Carg17277 vs. TAIR10
Match: AT2G36000.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 105.9 bits (263), Expect = 4.5e-23
Identity = 76/238 (31.93%), Postives = 111/238 (46.64%), Query Frame = 0


Query: 57  QKILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSS--MGLELSAVGRVLDMYPQ 116
           +K++YL++ L +DF      +P   S  LSAV+SV   +++  +   L    R++ M P+
Sbjct: 75  EKLIYLDS-LGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPE 134

Query: 117 LLTSDPDYDLYPIFDFLLNEVQI-PFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGF 176
           LLTS       P+  FLL EV +    D+R+++ R PRL         RP L FL+ +G 
Sbjct: 135 LLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGI 194

Query: 177 VGLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVP 236
           +       +                         S +    M  R P L  YSI  N  P
Sbjct: 195 LD----PHKHXXXXXXXXXXXXXXXXXXXXXXXXSRRSATAMFKRFPQLFNYSIAENYEP 254

Query: 237 KVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEF 292
           K+ Y + +M  D+ E+  FPQYFSFSLE +IKPRH      G+   L  MLK ++  F
Sbjct: 255 KLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNEAGF 307

[Close]

BLAST of Carg17277 vs. TAIR10
Match: AT2G21710.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-12
Identity = 42/120 (35.00%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 176 LNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKV 235
           +  + +    LL  S+   L P ++Y  +LG+    +  M+   P LL Y++ +NL PK 
Sbjct: 478 IGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV-DNLRPKY 537

Query: 236 DYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARL 295
            Y    M   L +L  FP++FS+SLER+I PRH ++VE+ ++  L  ML  +D EF  R+
Sbjct: 538 RYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEFERRV 596

[Close]

BLAST of Carg17277 vs. Swiss-Prot
Match: sp|Q84X53|MTEF1_ARATH (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 253.1 bits (645), Expect = 4.1e-66
Identity = 139/256 (54.30%), Postives = 176/256 (68.75%), Query Frame = 0


Query: 49  SDAGLLFRQKILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRV 108
           SD G+LFR+K++YL++ L+VD  KA R NP  RSA +S+V SVE  LSS GL   AVGR+
Sbjct: 27  SDTGILFREKLIYLQD-LNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRI 86

Query: 109 LDMYPQLLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFL 168
           LDM+P LLTSDP+ ++ P+  FL NE+ I   DI KSI RCPRL         RPAL FL
Sbjct: 87  LDMFPDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFL 146

Query: 169 RDLGFVGLNAITSQTTLLLVSSVEHTLLPKIQYL-ENLGLSHKDVVNMVLRSPALLTYSI 228
           + LGFVG + ITS+ T+LLVS+VE TL+PKI+YL E LG + ++V  MV+          
Sbjct: 147 KTLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVXXXXXXXXXX 206

Query: 229 QNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVS 288
                         M+GD+ EL+RFPQYFSFSLERKIKPRHRLL EHG+ + LS+MLKVS
Sbjct: 207 XXXXXXXXXXXXXXMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVS 266

Query: 289 DGEFTARLLEMRLQSS 304
           DG+F   LLE+RL+S+
Sbjct: 267 DGQFNHWLLELRLRSA 281

[Close]

BLAST of Carg17277 vs. Swiss-Prot
Match: sp|F4IHL3|MTEF2_ARATH (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.2e-11
Identity = 42/120 (35.00%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 176 LNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKV 235
           +  + +    LL  S+   L P ++Y  +LG+    +  M+   P LL Y++ +NL PK 
Sbjct: 478 IGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV-DNLRPKY 537

Query: 236 DYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARL 295
            Y    M   L +L  FP++FS+SLER+I PRH ++VE+ ++  L  ML  +D EF  R+
Sbjct: 538 RYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEFERRV 596

[Close]

BLAST of Carg17277 vs. Swiss-Prot
Match: sp|F4JVI3|MTEF5_ARATH (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-09
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 206 GLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSLERKIK 265
           G    ++  M+ R  AL T+S++ N++PK DYF   M    SEL +FPQ+F +SL+ +IK
Sbjct: 383 GFGLDEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERIK 442

Query: 266 PRHRLLVEHGLSLSLSKMLKVSDGEF 292
           PR+ L+   G+ L L+++L +S  EF
Sbjct: 443 PRYELVQRSGVRLLLNQVLSLSGIEF 467

[Close]

BLAST of Carg17277 vs. Swiss-Prot
Match: sp|Q9ZT96|MTEF4_ARATH (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF4 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.6e-09
Identity = 36/108 (33.33%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 188 VSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLS 247
           VS  E  +L  I +L   G S      MV+  P +L  ++   +    +YF  +MK  L 
Sbjct: 388 VSLSESPMLKHIDFLTKCGFSIDQTREMVIGCPQVLALNL-GIMKLSFEYFQKEMKRPLQ 447

Query: 248 ELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARL 296
           +L  FP +F++ LE  +KPRH+ +++ G+  SL+ ML  SD +F  R+
Sbjct: 448 DLVDFPAFFTYGLESTVKPRHKKIIKKGIKCSLAWMLNCSDEKFEQRM 494

[Close]

BLAST of Carg17277 vs. Swiss-Prot
Match: sp|B6TGN4|MTEF4_MAIZE (Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MTERF4 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-08
Identity = 33/101 (32.67%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 195 LLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQ 254
           +L  + +L   G     V  MV+  P LL  +I + +    +YF  +M+ DL EL  FP 
Sbjct: 351 VLKHVNFLTACGFMLSQVSKMVVACPQLLALNI-DIMRMNFEYFKNEMERDLEELVEFPA 410

Query: 255 YFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARL 296
           +F++ +E  ++PRH ++   GL+ SL+ +L  SD +F  R+
Sbjct: 411 FFTYGIESTVRPRHEMVSRKGLTCSLAWLLNCSDAKFDERM 450

[Close]

BLAST of Carg17277 vs. TrEMBL
Match: tr|A0A1S3BFK9|A0A1S3BFK9_CUCME (transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489133 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 5.1e-114
Identity = 222/307 (72.31%), Postives = 244/307 (79.48%), Query Frame = 0


Query: 1   MISRVQNLPP-WNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKI 60
           MISR+Q  PP   +F FP S A SL PL+NP+F KPRFT+SLN+QFSD SD+GLLFR+KI
Sbjct: 1   MISRLQLPPPSCFIFFFPPSLAGSLKPLKNPSFGKPRFTLSLNTQFSDRSDSGLLFREKI 60

Query: 61  LYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSD 120
           LYLENHL+VD RKAFRENP  RSA+LS +KSVEVCLSSMGL+ SAVGRVLDMYP+LLTS+
Sbjct: 61  LYLENHLNVDSRKAFRENPHCRSASLSTLKSVEVCLSSMGLDRSAVGRVLDMYPKLLTSN 120

Query: 121 PDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFVGLNAI 180
           PDYD+YPIFDFLLNEVQIPFPDI KSI+RCPR+         RPALKFLRDLGFVGL AI
Sbjct: 121 PDYDIYPIFDFLLNEVQIPFPDIHKSIIRCPRILVSDLDHQLRPALKFLRDLGFVGLKAI 180

Query: 181 TSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFL 240
           T QTT                       SH+DVVNMVLRSP LLTYSIQNNLVPKV+YFL
Sbjct: 181 TCQTTXXXXXXXXXXXXXXXXXXXXXXXSHEDVVNMVLRSPGLLTYSIQNNLVPKVNYFL 240

Query: 241 GDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMR 300
           GDMKGDL EL+ FPQYFSF+LERKIKPRHR LVEHGLSL LSKMLKVSDGEF A L EMR
Sbjct: 241 GDMKGDLLELKSFPQYFSFNLERKIKPRHRSLVEHGLSLPLSKMLKVSDGEFNAWLTEMR 300

Query: 301 LQSSTAD 307
            +S  AD
Sbjct: 301 CRSLMAD 307

[Close]

BLAST of Carg17277 vs. TrEMBL
Match: tr|A0A0A0KW02|A0A0A0KW02_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605740 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.0e-106
Identity = 206/286 (72.03%), Postives = 226/286 (79.02%), Query Frame = 0


Query: 21  APSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKILYLENHLHVDFRKAFRENPDS 80
           A SL PL NP+FRKPRFT+SL++QFSD  D+GLLFR+KILYLENHL+VD RKAFRENP  
Sbjct: 53  AGSLKPLTNPSFRKPRFTLSLDTQFSDRFDSGLLFREKILYLENHLNVDSRKAFRENPHC 112

Query: 81  RSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLYPIFDFLLNEVQIPFP 140
           RSATLS +KSVEVCLSSMGL+ SAV RVLDM+P+LLTS+PDYD+YPIFDFLLNEV+IPFP
Sbjct: 113 RSATLSTLKSVEVCLSSMGLDRSAVSRVLDMHPKLLTSNPDYDIYPIFDFLLNEVEIPFP 172

Query: 141 DIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTLLPKIQ 200
           DIRKSI+RCPR+         RPALKFLRDLGFVGL AIT Q                  
Sbjct: 173 DIRKSIIRCPRILVSDLDHQLRPALKFLRDLGFVGLKAITCQXXXXXXXXXXXXXXXXXX 232

Query: 201 YLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSL 260
                  SH+DVVNMVLRSP LLTYSIQNNLVPKV YFLGDMKGDL EL+RFPQYFSF+L
Sbjct: 233 XXXXXXXSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFLGDMKGDLLELKRFPQYFSFNL 292

Query: 261 ERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRLQSSTAD 307
           ERKIK RHR LVEHGLSL LSKMLK SDGEF A L+EMR  S  AD
Sbjct: 293 ERKIKLRHRSLVEHGLSLPLSKMLKASDGEFNAWLIEMRCSSLMAD 338

[Close]

BLAST of Carg17277 vs. TrEMBL
Match: tr|A0A251R454|A0A251R454_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G276500 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.1e-95
Identity = 190/287 (66.20%), Postives = 226/287 (78.75%), Query Frame = 0


Query: 17  PRSSAPSLNPLRN-PNFRKPRFTISLNSQFSDHSDAGLLFRQKILYLENHLHVDFRKAFR 76
           P+S + SL P  N PN+R         S   + SD+GLLFR+K+LYLE HL+V+ +KA +
Sbjct: 59  PKSLSNSLRPTLNFPNYRP-------LSHHPNTSDSGLLFREKVLYLETHLNVNSQKALQ 118

Query: 77  ENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLYPIFDFLLNEV 136
            NPD RS  +S++KSVE CLSSMG+E SA GR+LDMYPQLLT DP   LYPIFDFLLNEV
Sbjct: 119 LNPDFRSCPISSLKSVENCLSSMGIERSAFGRILDMYPQLLTVDPHTHLYPIFDFLLNEV 178

Query: 137 QIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTL 196
            IPFPDIRKSI+RCPRL         RPALKFL +LGFVG ++IT  TTLLLVSSVE TL
Sbjct: 179 LIPFPDIRKSIIRCPRLLVCDVDDQLRPALKFLTELGFVGRSSITCHTTLLLVSSVEGTL 238

Query: 197 LPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQY 256
           LPKIQYL++LGLS+++VVNMV+RSP LLT+SI+NN  PKV++ L +MK D++EL+RFPQY
Sbjct: 239 LPKIQYLQSLGLSYEEVVNMVIRSPGLLTFSIKNNYKPKVEFLLKEMKKDIAELKRFPQY 298

Query: 257 FSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRLQS 303
           FSFSLE KIKPRHRLLVEHG SL L +MLKVSDGEF  RL+EMRL S
Sbjct: 299 FSFSLEGKIKPRHRLLVEHGFSLPLREMLKVSDGEFNVRLIEMRLGS 338

[Close]

BLAST of Carg17277 vs. TrEMBL
Match: tr|M5XYP7|M5XYP7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009311mg PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.0e-90
Identity = 185/293 (63.14%), Postives = 222/293 (75.77%), Query Frame = 0


Query: 8   LPPWNLFLFPRSS-APSLNPLRNPNFRKPR-----FTISLN-------SQFSDHSDAGLL 67
           L P  LFL P+ S  PS  P +NPN + P+        +LN       S   + SD+GLL
Sbjct: 4   LQPQTLFLLPQGSLIPSPKPSKNPNPKTPKSLSNSLRPTLNFPNYRPLSHHPNTSDSGLL 63

Query: 68  FRQKILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQ 127
           FR+K+LYLE HL+V+ +KA + NPD RS  +S++KSVE CLSSMG+E SA GR+LDMYPQ
Sbjct: 64  FREKVLYLETHLNVNSQKALQLNPDFRSCPISSLKSVENCLSSMGIERSAFGRILDMYPQ 123

Query: 128 LLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLXXXXXXXXXRPALKFLRDLGFV 187
           LLT DP   LYPIFDFLLNEV IPFPDIRKSI+RCPRL         RPALKFL +LGFV
Sbjct: 124 LLTVDPHTHLYPIFDFLLNEVLIPFPDIRKSIIRCPRLLVCDVDDQLRPALKFLTELGFV 183

Query: 188 GLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPK 247
           G ++IT  TTLLLVSSVE TLLPKIQYL++LGLS+++VVNMV+RSP LLT+SI+NN  PK
Sbjct: 184 GRSSITCHTTLLLVSSVEGTLLPKIQYLQSLGLSYEEVVNMVIRSPGLLTFSIKNNYKPK 243

Query: 248 VDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVS 288
           V++ L +MK D++EL+RFPQYFSFSLE KIKPRHRLLVEHG SL L +MLK S
Sbjct: 244 VEFLLKEMKKDIAELKRFPQYFSFSLEGKIKPRHRLLVEHGFSLPLREMLKGS 296

[Close]

BLAST of Carg17277 vs. TrEMBL
Match: tr|A0A218WUN9|A0A218WUN9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr009576 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 2.8e-88
Identity = 173/272 (63.60%), Postives = 211/272 (77.57%), Query Frame = 0


Query: 30  PNFRKPRFTISLNSQFSDHSDAGLLFRQKILYLENHLHVDFRKAFRENPDSRSATLSAVK 89
           P  RKP+  +S        +D+GLLFR+K+ YL + L+VD  KA RENPD RS  LSA+ 
Sbjct: 22  PTARKPQVLLSPPPSPPPLTDSGLLFREKLSYLSS-LNVDPHKALRENPDFRSCPLSALH 81

Query: 90  SVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRC 149
           SVE CLSS GL  S++GR+LDMYPQLLT++P  DLYP+FDFLLNEV+IPF DI+KSI RC
Sbjct: 82  SVEDCLSSFGLPRSSLGRILDMYPQLLTAEPYADLYPVFDFLLNEVRIPFHDIKKSITRC 141

Query: 150 PRLXXXXXXXXXRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSH 209
           PR+         RP   FLR  GFVG +AI  QTT+LLVSSV+ TLLPKI+YL++LG  +
Sbjct: 142 PRILICSVPDQLRPTHSFLRSFGFVGPHAIACQTTVLLVSSVKFTLLPKIEYLQSLGFEY 201

Query: 210 KDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHR 269
           +DVVNMV+RSP LLT+SI+NN  PKVDYFLG+MKGDL+EL+RFPQ+FSFSLE KIKPRHR
Sbjct: 202 RDVVNMVIRSPGLLTFSIENNYKPKVDYFLGEMKGDLAELKRFPQFFSFSLEGKIKPRHR 261

Query: 270 LLVEHGLSLSLSKMLKVSDGEFTARLLEMRLQ 302
            LV HG  LSL +ML+VSDGEF  RL+EM+L+
Sbjct: 262 QLVRHGFRLSLPEMLRVSDGEFNERLIEMQLK 292

The following BLAST results are available for this feature:

BLAST of Carg17277 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945324.1	2.9e-161	99.35	transcription termination factor MTEF1, chloroplastic [Cucurbita moschata] >XP_0...	[more]
XP_023542512.1	1.1e-160	99.35	transcription termination factor MTEF1, chloroplastic [Cucurbita pepo subsp. pep...	[more]
XP_022968085.1	1.0e-158	98.37	transcription termination factor MTEF1, chloroplastic [Cucurbita maxima] >XP_022...	[more]
XP_022151208.1	4.3e-125	75.72	transcription termination factor MTEF1, chloroplastic [Momordica charantia] >XP_...	[more]
XP_008446371.1	7.7e-114	72.31	PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo]	[more]

BLAST of Carg17277 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G03050.1	2.3e-67	54.30	Mitochondrial transcription termination factor family protein	[more]
AT2G34620.1	3.4e-31	39.75	Mitochondrial transcription termination factor family protein	[more]
AT3G18870.1	1.9e-29	32.31	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.1	4.5e-23	31.93	Mitochondrial transcription termination factor family protein	[more]
AT2G21710.1	1.2e-12	35.00	Mitochondrial transcription termination factor family protein	[more]

BLAST of Carg17277 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84X53\|MTEF1_ARATH	4.1e-66	54.30	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
sp\|F4IHL3\|MTEF2_ARATH	2.2e-11	35.00	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
sp\|F4JVI3\|MTEF5_ARATH	1.6e-09	40.70	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
sp\|Q9ZT96\|MTEF4_ARATH	4.6e-09	33.33	Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana O...	[more]
sp\|B6TGN4\|MTEF4_MAIZE	1.0e-08	32.67	Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MT...	[more]

BLAST of Carg17277 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BFK9\|A0A1S3BFK9_CUCME	5.1e-114	72.31	transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0KW02\|A0A0A0KW02_CUCSA	3.0e-106	72.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605740 PE=4 SV=1	[more]
tr\|A0A251R454\|A0A251R454_PRUPE	3.1e-95	66.20	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G276500 PE=4 SV=1	[more]
tr\|M5XYP7\|M5XYP7_PRUPE	3.0e-90	63.14	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009311mg PE=4 SV=1	[more]
tr\|A0A218WUN9\|A0A218WUN9_PUNGR	2.8e-88	63.60	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr009576 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003690	double-stranded DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR038538	MTERF_sf
IPR003690	MTERF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003690	double-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17277-RA	Carg17277-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 177..208 e-value: 3.2 score: 16.7 coord: 106..138 e-value: 5.4 score: 16.0 coord: 213..245 e-value: 0.0014 score: 27.9 coord: 246..277 e-value: 1.8E-5 score: 34.1 coord: 143..174 e-value: 5.6E-4 score: 29.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 141..291 e-value: 2.6E-31 score: 108.7
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	G3DSA:1.25.70.10		coord: 54..302 e-value: 3.2E-36 score: 126.9
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 44..303
None	No IPR available	PANTHER	PTHR13068:SF36	TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC	coord: 44..303

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17277	Cla010194	Watermelon (97103) v1	carwmB0097
Carg17277	Csa5G605740	Cucumber (Chinese Long) v2	carcuB0108
Carg17277	MELO3C012106	Melon (DHL92) v3.5.1	carmeB0101
Carg17277	ClCG05G024170	Watermelon (Charleston Gray)	carwcgB0099
Carg17277	CSPI05G23850	Wild cucumber (PI 183967)	carcpiB0113
Carg17277	Cucsa.284970	Cucumber (Gy14) v1	carcgyB0122
Carg17277	CmaCh18G011400	Cucurbita maxima (Rimu)	carcmaB0131
Carg17277	CmoCh18G011610	Cucurbita moschata (Rifu)	carcmoB0140
Carg17277	Lsi04G004080	Bottle gourd (USVL1VR-Ls)	carlsiB091
Carg17277	Cp4.1LG09g01770	Cucurbita pepo (Zucchini)	carcpeB0146
Carg17277	CsGy5G023400	Cucumber (Gy14) v2	carcgybB0108
Carg17277	MELO3C012106.2	Melon (DHL92) v3.6.1	carmedB0103
Carg17277	CsaV3_5G032850	Cucumber (Chinese Long) v3	carcucB0117
Carg17277	Cla97C05G106190	Watermelon (97103) v2	carwmbB0100
Carg17277	Bhi07G001267	Wax gourd	carwgoB0115

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17277	Silver-seed gourd	carcarB056
Carg17277	Silver-seed gourd	carcarB110
Carg17277	Silver-seed gourd	carcarB111
Carg17277	Silver-seed gourd	carcarB113
Carg17277	Silver-seed gourd	carcarB115
Carg17277	Silver-seed gourd	carcarB116
Carg17277	Cucumber (Gy14) v2	carcgybB0106
Carg17277	Cucumber (Gy14) v2	carcgybB0109
Carg17277	Cucumber (Gy14) v1	carcgyB0118
Carg17277	Cucumber (Gy14) v1	carcgyB0119
Carg17277	Cucumber (Gy14) v1	carcgyB0120
Carg17277	Cucurbita maxima (Rimu)	carcmaB0129
Carg17277	Cucurbita maxima (Rimu)	carcmaB0132
Carg17277	Cucurbita maxima (Rimu)	carcmaB0133
Carg17277	Cucurbita moschata (Rifu)	carcmoB0138
Carg17277	Cucurbita moschata (Rifu)	carcmoB0141
Carg17277	Cucurbita moschata (Rifu)	carcmoB0142
Carg17277	Cucurbita moschata (Rifu)	carcmoB0143
Carg17277	Cucurbita pepo (Zucchini)	carcpeB0148
Carg17277	Cucurbita pepo (Zucchini)	carcpeB0150
Carg17277	Wild cucumber (PI 183967)	carcpiB0111
Carg17277	Wild cucumber (PI 183967)	carcpiB0114
Carg17277	Cucumber (Chinese Long) v2	carcuB0106
Carg17277	Cucumber (Chinese Long) v2	carcuB0109
Carg17277	Cucumber (Chinese Long) v3	carcucB0115
Carg17277	Cucumber (Chinese Long) v3	carcucB0118
Carg17277	Bottle gourd (USVL1VR-Ls)	carlsiB089
Carg17277	Bottle gourd (USVL1VR-Ls)	carlsiB090
Carg17277	Melon (DHL92) v3.5.1	carmeB0100
Carg17277	Melon (DHL92) v3.5.1	carmeB0102
Carg17277	Melon (DHL92) v3.6.1	carmedB0102
Carg17277	Melon (DHL92) v3.6.1	carmedB0104
Carg17277	Watermelon (Charleston Gray)	carwcgB0097
Carg17277	Watermelon (Charleston Gray)	carwcgB0098
Carg17277	Watermelon (97103) v1	carwmB0095
Carg17277	Watermelon (97103) v1	carwmB0099
Carg17277	Watermelon (97103) v2	carwmbB0099
Carg17277	Watermelon (97103) v2	carwmbB0102
Carg17277	Watermelon (97103) v2	carwmbB0104
Carg17277	Wax gourd	carwgoB0112
Carg17277	Wax gourd	carwgoB0114