Carg17107 (gene) Silver-seed gourd

Overview
NameCarg17107
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionE3 ubiquitin-protein ligase rma1h1-like protein
LocationCucurbita_argyrosperma_scaffold_062 : 522517 .. 523293 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACAAAACCATTCCGTGCATGAGTCTGAACATGATGTCTCTCTCAAGCAAAACTGGAGATCCGTCTCAGAAGATGCTAATGGTTGTTTCGAATGCAACATTTGCTTAGACTCAGCTGATGATCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACATATGGCTTCACGTTCAAATCTCCAGCGACGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATCACTCCCTCTTCTTTGGTTCCCCTCTATGGTCGTGGCACGTCGAACTCAGATTCCGAATCCAAGAAGTCTCACTTGGGTATGGCTGTACCTCGAAGACCACCACCGTCGATGAACGCACTGCCCCATTCCAATGCTGCCTCTGCATTGCATCCTAGCCAGCAGCTTCATCCAAATTATATCCGCTCGTCCTCGCACCCACACCCGCACCAGCACCAGCACCCAATCTATCACCAACAATACTTCCCCCAGGCGTATAGCGACATTGCTTCATATGCACCTTCTTATCTTGGTAATGCCGTGATAACAAGTCTGCTAAACCCGACGATTGGGATGTTCGGAGAAACAGTTTTCACTAGAATTTTCGGTAGCGTGGATGGAAACTTGTTGCCATACCCGACTTACAACAACTCGATCACAGGGAATGGCAGTAGCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGTCTCCATCTTTCTATTTTGCTGCTTTATCATCTGTCTTCTATTGTTTTGA

mRNA sequence

ATGGAACAAAACCATTCCGTGCATGAGTCTGAACATGATGTCTCTCTCAAGCAAAACTGGAGATCCGTCTCAGAAGATGCTAATGGTTGTTTCGAATGCAACATTTGCTTAGACTCAGCTGATGATCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACATATGGCTTCACGTTCAAATCTCCAGCGACGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATCACTCCCTCTTCTTTGGTTCCCCTCTATGGTCGTGGCACGTCGAACTCAGATTCCGAATCCAAGAAGTCTCACTTGGGTATGGCTGTACCTCGAAGACCACCACCGTCGATGAACGCACTGCCCCATTCCAATGCTGCCTCTGCATTGCATCCTAGCCAGCAGCTTCATCCAAATTATATCCGCTCGTCCTCGCACCCACACCCGCACCAGCACCAGCACCCAATCTATCACCAACAATACTTCCCCCAGGCGTATAGCGACATTGCTTCATATGCACCTTCTTATCTTGGTAATGCCGTGATAACAAGTCTGCTAAACCCGACGATTGGGATGTTCGGAGAAACAGTTTTCACTAGAATTTTCGGTAGCGTGGATGGAAACTTGTTGCCATACCCGACTTACAACAACTCGATCACAGGGAATGGCAGTAGCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGTCTCCATCTTTCTATTTTGCTGCTTTATCATCTGTCTTCTATTGTTTTGA

Coding sequence (CDS)

ATGGAACAAAACCATTCCGTGCATGAGTCTGAACATGATGTCTCTCTCAAGCAAAACTGGAGATCCGTCTCAGAAGATGCTAATGGTTGTTTCGAATGCAACATTTGCTTAGACTCAGCTGATGATCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACATATGGCTTCACGTTCAAATCTCCAGCGACGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATCACTCCCTCTTCTTTGGTTCCCCTCTATGGTCGTGGCACGTCGAACTCAGATTCCGAATCCAAGAAGTCTCACTTGGGTATGGCTGTACCTCGAAGACCACCACCGTCGATGAACGCACTGCCCCATTCCAATGCTGCCTCTGCATTGCATCCTAGCCAGCAGCTTCATCCAAATTATATCCGCTCGTCCTCGCACCCACACCCGCACCAGCACCAGCACCCAATCTATCACCAACAATACTTCCCCCAGGCGTATAGCGACATTGCTTCATATGCACCTTCTTATCTTGGTAATGCCGTGATAACAAGTCTGCTAAACCCGACGATTGGGATGTTCGGAGAAACAGTTTTCACTAGAATTTTCGGTAGCGTGGATGGAAACTTGTTGCCATACCCGACTTACAACAACTCGATCACAGGGAATGGCAGTAGCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGTCTCCATCTTTCTATTTTGCTGCTTTATCATCTGTCTTCTATTGTTTTGA

Protein sequence

MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNALPHSNAASALHPSQQLHPNYIRSSSHPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF
Homology
[Close]
BLAST of Carg17107 vs. NCBI nr
Match: XP_022976563.1 (E3 ubiquitin-protein ligase RMA3-like [Cucurbita maxima])

HSP 1 Score: 454.1 bits (1167), Expect = 3.1e-124
Identity = 236/258 (91.47%), Postives = 238/258 (92.25%), Query Frame = 0 

Query: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NALPHSNAASALHPSQQXXXNYIRXXXXXXXXXXXXXXXXQQYFPQAYSDIASYAPSYLG 180
           N  PHSNAASALH SQQ   NYIR       XXXXXXXXX       Y+D+ASYAPSYLG
Sbjct: 121 NTPPHSNAASALHHSQQLHPNYIR--SPSHPXXXXXXXXXXXXXXXXYTDVASYAPSYLG 180

Query: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240
           NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL
Sbjct: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240

Query: 241 NRVSIFLFCCFIICLLLF 259
           NRVSIFLFCCFIICLLLF
Sbjct: 241 NRVSIFLFCCFIICLLLF 256

[Close]
BLAST of Carg17107 vs. NCBI nr
Match: XP_022937391.1 (E3 ubiquitin-protein ligase RMA3-like [Cucurbita moschata])

HSP 1 Score: 440.7 bits (1132), Expect = 3.5e-120
Identity = 239/264 (90.53%), Postives = 239/264 (90.53%), Query Frame = 0 

Query: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRG SNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGMSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NALPHSNAASALHPSQQXXXNYIR------XXXXXXXXXXXXXXXXQQYFPQAYSDIASY 180
           NA               XXXNYIR      XXXXXXXXXXXXX   QQYFPQAYSDIASY
Sbjct: 121 NAXXXXXXXXXXXXXXXXXXNYIRSSXXXXXXXXXXXXXXXXXIYHQQYFPQAYSDIASY 180

Query: 181 APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM 240
           APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM
Sbjct: 181 APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM 240

Query: 241 QLDKSLNRVSIFLFCCFIICLLLF 259
           QLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 QLDKSLNRVSIFLFCCFIICLLLF 264

[Close]
BLAST of Carg17107 vs. NCBI nr
Match: XP_023535125.1 (E3 ubiquitin-protein ligase RMA3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 422.5 bits (1085), Expect = 1.0e-114
Identity = 233/258 (90.31%), Postives = 234/258 (90.70%), Query Frame = 0 

Query: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHES HDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESGHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NALPHSNAASALHPSQQXXXNYIRXXXXXXXXXXXXXXXXQQYFPQAYSDIASYAPSYLG 180
           N                XXX    XXXXXXXXXXXXXXXX   FPQAYSD+ASYAPSYLG
Sbjct: 121 N--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPQAYSDVASYAPSYLG 180

Query: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240
           NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL
Sbjct: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240

Query: 241 NRVSIFLFCCFIICLLLF 259
           NRVSIFLFCCFIICLLLF
Sbjct: 241 NRVSIFLFCCFIICLLLF 256

[Close]
BLAST of Carg17107 vs. NCBI nr
Match: XP_004141226.1 (PREDICTED: E3 ubiquitin-protein ligase RMA3 [Cucumis sativus] >KGN55135.1 hypothetical protein Csa_4G637750 [Cucumis sativus])

HSP 1 Score: 413.3 bits (1061), Expect = 6.0e-112
Identity = 213/269 (79.18%), Postives = 226/269 (84.01%), Query Frame = 0 

Query: 1   MEQNHSVH----ESEHDVSLKQNWRS------VSEDANGCFECNICLDSADDPVVTLCGH 60
           MEQN+SV     ESE DVSLKQNW+S      +SEDANGCF+CNICLDSA DPVVTLCGH
Sbjct: 1   MEQNYSVPEAYLESEQDVSLKQNWKSISTQSTISEDANGCFDCNICLDSAADPVVTLCGH 60

Query: 61  LYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120
           LYCWPCIY WLHVQISS+EPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM
Sbjct: 61  LYCWPCIYKWLHVQISSNEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120

Query: 121 AVPRRPPPSMNALPHSNAASALHPSQQXXXNYIRXXXXXXXXXXXXXXXXQQYFPQA-YS 180
           AVPRRPPPSMN   HSN++S L+PSQ+   NYIR                QQYFPQA Y 
Sbjct: 121 AVPRRPPPSMNTPSHSNSSSTLYPSQELHSNYIR--------SPSHPIYHQQYFPQATYG 180

Query: 181 DIASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRM 240
           + ASY+PSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPY  YNNSI+GN S+RM
Sbjct: 181 NFASYSPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYSPYNNSISGNASTRM 240

Query: 241 RRQEMQLDKSLNRVSIFLFCCFIICLLLF 259
           RRQEMQLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 RRQEMQLDKSLNRVSIFLFCCFIICLLLF 261

[Close]
BLAST of Carg17107 vs. NCBI nr
Match: XP_022139659.1 (E3 ubiquitin-protein ligase RMA3-like [Momordica charantia])

HSP 1 Score: 399.4 bits (1025), Expect = 9.0e-108
Identity = 207/269 (76.95%), Postives = 220/269 (81.78%), Query Frame = 0 

Query: 1   MEQNHSV----HESEHDVSLKQNWRS------VSEDANGCFECNICLDSADDPVVTLCGH 60
           MEQ ++      ESE DVSLKQNW+S      VS+DA+GCF+CNICLDSA +PVVTLCGH
Sbjct: 1   MEQTYTTPEAYFESEQDVSLKQNWKSISSQPTVSDDAHGCFDCNICLDSAAEPVVTLCGH 60

Query: 61  LYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120
           LYCWPCIY WL+VQISS+EPEN QNCPVCKASITPSSLVPLYGRG SN+DSESKKSHLG+
Sbjct: 61  LYCWPCIYKWLNVQISSNEPENVQNCPVCKASITPSSLVPLYGRGKSNTDSESKKSHLGV 120

Query: 121 AVPRRPPPS-MNALPHSNAASALHPSQQXXXNYIRXXXXXXXXXXXXXXXXQQYFPQAYS 180
           AVPRRPPPS  N L +SNA SALHPSQ    NY R                QQYFPQAY 
Sbjct: 121 AVPRRPPPSATNTLHNSNATSALHPSQDLHPNYTR--------SPSHPIYHQQYFPQAYG 180

Query: 181 DIASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRM 240
           DIA+Y PSYLGNAVITSLLNPTIGMFGETVFTRIFGSVD NLLPYP YNNSI GNGSSRM
Sbjct: 181 DIATYTPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDSNLLPYPPYNNSIPGNGSSRM 240

Query: 241 RRQEMQLDKSLNRVSIFLFCCFIICLLLF 259
           RRQEMQLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 RRQEMQLDKSLNRVSIFLFCCFIICLLLF 261

[Close]
BLAST of Carg17107 vs. TAIR10
Match: AT4G27470.1 (RING membrane-anchor 3)

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-47
Identity = 114/235 (48.51%), Postives = 142/235 (60.43%), Query Frame = 0 

Query: 28  NGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPENTQ-NCPVCKASITPS 87
           +GCF+CNICLD+A DPVVTLCGHL+CWPCIY WLHVQ+SS   +  Q NCPVCK++IT +
Sbjct: 39  SGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITIT 98

Query: 88  SLVPLYGRGTSNSDS---ESKKSHLGMAVPRRPPPSMNALPHSNAASALHPSQQXXXNYI 147
           SLVPLYGRG S+  S     K+  L   +PRRP PS    P   +AS+L+PS Q      
Sbjct: 99  SLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNP-ITSASSLNPSLQ------ 158

Query: 148 RXXXXXXXXXXXXXXXXQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGETVFTRI 207
                       X     QY P+ ++   S   + L NAV+ S L P IGMFG+ V+TRI
Sbjct: 159 -------HQTLSXSFHNHQYSPRGFTTTES---TDLANAVMMSFLYPVIGMFGDLVYTRI 218

Query: 208 FGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 259
           FG          T+ N+I     S   ++ MQ +KSLNRVSIF  CC I+CLLLF
Sbjct: 219 FG----------TFTNTIAQPYQS---QRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]
BLAST of Carg17107 vs. TAIR10
Match: AT4G03510.1 (RING membrane-anchor 1)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-33
Identity = 93/226 (41.15%), Postives = 129/226 (57.08%), Query Frame = 0 

Query: 24  SEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQ--ISSDEPENTQNCPVCKA 83
           ++D+N  F+CNICLDS  +PVVTLCGHL+CWPCI+ WL VQ   +SDE +  + CPVCK+
Sbjct: 41  TDDSN--FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKS 100

Query: 84  SITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRP--PPSMNALPHSNAASA-LHPSQQX 143
            ++ S+LVPLYGRG   +  E K S     VP+RP  P     +P+S  AS  L  SQ+ 
Sbjct: 101 KVSHSTLVPLYGRGRCTTQEEGKNS-----VPKRPVGPVYRLEMPNSPYASTDLRLSQRV 160

Query: 144 XXNYIRXXXXXXXXXXXXXXXXQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGET 203
             N                   + Y+P +   ++S + SY      +++L+P + M GE 
Sbjct: 161 HFN----------------SPQEGYYPVS-GVMSSNSLSY------SAVLDPVMVMVGEM 220

Query: 204 VFTRIFGSVDGNLLPYP-TYNNSITGNGSSRMRRQEMQLDKSLNRV 244
           V TR+FG+   +   YP TYN  + G    RMRR+ MQ DKSL R+
Sbjct: 221 VATRLFGTRVMDRFAYPDTYN--LAGTSGPRMRRRIMQADKSLGRI 234

[Close]
BLAST of Carg17107 vs. TAIR10
Match: AT4G28270.1 (RING membrane-anchor 2)

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-25
Identity = 75/240 (31.25%), Postives = 103/240 (42.92%), Query Frame = 0 

Query: 26  DANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISS-------DEPENTQNCPV 85
           D+ G F+CNICLD   DPVVTLCGHL+CWPCI+ W +   +S       D       CPV
Sbjct: 14  DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73

Query: 86  CKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNALPHSNAASALHPSQQX 145
           CK+ ++ ++LVP+YGRG        K    G  VP RP   +  L           SQ+ 
Sbjct: 74  CKSDVSEATLVPIYGRG-------QKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGESQR- 133

Query: 146 XXNYIRXXXXXXXXXXXXXXXXQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGET 205
                                                        +  + +P +G+  E 
Sbjct: 134 --------------------------------------------YMYRMPDPVMGVVCEM 193

Query: 206 VFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 259
           V+ R+FG    N+ PY   N         R RR+ MQ ++SL+RV +FL C   +CL LF
Sbjct: 194 VYRRLFGESSSNMAPYRDMN--------VRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]
BLAST of Carg17107 vs. TAIR10
Match: AT2G23780.1 (RING/U-box superfamily protein)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-24
Identity = 53/111 (47.75%), Postives = 68/111 (61.26%), Query Frame = 0 

Query: 24  SEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPENTQNCPVCKASI 83
           + D  G FECNIC + A DP+VTLCGHL+CWPC+Y WLH         ++Q CPVCKA +
Sbjct: 19  TNDQGGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLH------HHSHSQECPVCKAVV 78

Query: 84  TPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRP----PPSMNALPHSNAAS 131
               LVPLYGRG + +D  SK+ + G+ +P RP    P +    P   AAS
Sbjct: 79  QDDKLVPLYGRGKNQTDPRSKR-YPGLRIPNRPTGQRPETAAPPPQPEAAS 122

[Close]
BLAST of Carg17107 vs. TAIR10
Match: AT1G19310.1 (RING/U-box superfamily protein)

HSP 1 Score: 109.8 bits (273), Expect = 2.6e-24
Identity = 59/124 (47.58%), Postives = 72/124 (58.06%), Query Frame = 0 

Query: 13  DVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPEN 72
           DV    +    + + +  FECNICLD A DP+VTLCGHL+CWPC+Y WLH+   S     
Sbjct: 3   DVPSCSSGNDTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQS----- 62

Query: 73  TQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPP---PSMNALPHSNAA 132
            ++CPVCKA I    LVPLYGRG S++D  S KS  G+ VP RP    P     P  N  
Sbjct: 63  -KDCPVCKAVIEEDRLVPLYGRGKSSADPRS-KSIPGLEVPNRPSGQRPETAQPPDPNHG 119

Query: 133 SALH 134
            A H
Sbjct: 123 FAHH 119

[Close]
BLAST of Carg17107 vs. Swiss-Prot
Match: sp|Q8GUK7|RMA3_ARATH (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.3e-46
Identity = 114/235 (48.51%), Postives = 142/235 (60.43%), Query Frame = 0 

Query: 28  NGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPENTQ-NCPVCKASITPS 87
           +GCF+CNICLD+A DPVVTLCGHL+CWPCIY WLHVQ+SS   +  Q NCPVCK++IT +
Sbjct: 39  SGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITIT 98

Query: 88  SLVPLYGRGTSNSDS---ESKKSHLGMAVPRRPPPSMNALPHSNAASALHPSQQXXXNYI 147
           SLVPLYGRG S+  S     K+  L   +PRRP PS    P   +AS+L+PS Q      
Sbjct: 99  SLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNP-ITSASSLNPSLQ------ 158

Query: 148 RXXXXXXXXXXXXXXXXQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGETVFTRI 207
                       X     QY P+ ++   S   + L NAV+ S L P IGMFG+ V+TRI
Sbjct: 159 -------HQTLSXSFHNHQYSPRGFTTTES---TDLANAVMMSFLYPVIGMFGDLVYTRI 218

Query: 208 FGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 259
           FG          T+ N+I     S   ++ MQ +KSLNRVSIF  CC I+CLLLF
Sbjct: 219 FG----------TFTNTIAQPYQS---QRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]
BLAST of Carg17107 vs. Swiss-Prot
Match: sp|Q6R567|RMA1_CAPAN (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.1e-39
Identity = 100/263 (38.02%), Postives = 144/263 (54.75%), Query Frame = 0 

Query: 10  SEHDVSLKQNWRS----VSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQI 69
           ++HD  L + W+S    V E+ +G F+CNICLD   +PV+TLCGHLYCWPCIY W++ Q 
Sbjct: 15  NKHDTPLGK-WKSMNDEVEENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQS 74

Query: 70  SSDEPENTQ--NCPVCKASITPSSLVPLYGR-GTSNSDSESKKSHLGMAVPRRPPPSMNA 129
            S E  + Q   CPVCKA ++  +L+PLYGR G S   SE K  +LG+ +P+RPP     
Sbjct: 75  VSSENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPSPRCG 134

Query: 130 LPHSNAASALHPSQQXXXNYIRXXXXXXXXXXXXXXXXQQYFPQAYSDIASYAPSYLGNA 189
                  +  +PSQ                        + Y  Q+ +   +Y  SY+ + 
Sbjct: 135 GHFLLPTTDSNPSQ--------------------LLQRRGYQQQSQTRQPAYQGSYMSSP 194

Query: 190 VIT------SLLNPTIGMFGETVFTRIFGSVDGNLLPYP-TYNNSITGNGSSRMRRQEMQ 249
           +++      ++L  +  M GE  + RIFG+    +  YP +YN +I  + S RMRRQ  Q
Sbjct: 195 MLSPGGATANMLQHS--MIGEVAYARIFGNSSTTMYTYPNSYNLAI--SSSPRMRRQLSQ 252

Query: 250 LDKSLNRVSIFLFCCFIICLLLF 259
            D+SL R+  FLFCCF+ CL+LF
Sbjct: 255 ADRSLGRICFFLFCCFVTCLILF 252

[Close]
BLAST of Carg17107 vs. Swiss-Prot
Match: sp|O64425|RMA1_ARATH (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.9e-32
Identity = 93/226 (41.15%), Postives = 129/226 (57.08%), Query Frame = 0 

Query: 24  SEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQ--ISSDEPENTQNCPVCKA 83
           ++D+N  F+CNICLDS  +PVVTLCGHL+CWPCI+ WL VQ   +SDE +  + CPVCK+
Sbjct: 41  TDDSN--FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKS 100

Query: 84  SITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRP--PPSMNALPHSNAASA-LHPSQQX 143
            ++ S+LVPLYGRG   +  E K S     VP+RP  P     +P+S  AS  L  SQ+ 
Sbjct: 101 KVSHSTLVPLYGRGRCTTQEEGKNS-----VPKRPVGPVYRLEMPNSPYASTDLRLSQRV 160

Query: 144 XXNYIRXXXXXXXXXXXXXXXXQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGET 203
             N                   + Y+P +   ++S + SY      +++L+P + M GE 
Sbjct: 161 HFN----------------SPQEGYYPVS-GVMSSNSLSY------SAVLDPVMVMVGEM 220

Query: 204 VFTRIFGSVDGNLLPYP-TYNNSITGNGSSRMRRQEMQLDKSLNRV 244
           V TR+FG+   +   YP TYN  + G    RMRR+ MQ DKSL R+
Sbjct: 221 VATRLFGTRVMDRFAYPDTYN--LAGTSGPRMRRRIMQADKSLGRI 234

[Close]
BLAST of Carg17107 vs. Swiss-Prot
Match: sp|P93030|RMA2_ARATH (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.5e-24
Identity = 75/240 (31.25%), Postives = 103/240 (42.92%), Query Frame = 0 

Query: 26  DANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISS-------DEPENTQNCPV 85
           D+ G F+CNICLD   DPVVTLCGHL+CWPCI+ W +   +S       D       CPV
Sbjct: 14  DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73

Query: 86  CKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNALPHSNAASALHPSQQX 145
           CK+ ++ ++LVP+YGRG        K    G  VP RP   +  L           SQ+ 
Sbjct: 74  CKSDVSEATLVPIYGRG-------QKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGESQR- 133

Query: 146 XXNYIRXXXXXXXXXXXXXXXXQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGET 205
                                                        +  + +P +G+  E 
Sbjct: 134 --------------------------------------------YMYRMPDPVMGVVCEM 193

Query: 206 VFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 259
           V+ R+FG    N+ PY   N         R RR+ MQ ++SL+RV +FL C   +CL LF
Sbjct: 194 VYRRLFGESSSNMAPYRDMN--------VRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]
BLAST of Carg17107 vs. Swiss-Prot
Match: sp|Q09463|RNF5_CAEEL (RING finger protein 5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.1e-19
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 0 

Query: 10  SEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDE 69
           SE     ++   S ++D +  FECNICLD+A D VV+LCGHL+CWPC+  WL      D 
Sbjct: 3   SETKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWL------DT 62

Query: 70  PENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPP 119
             N Q CPVCK++I  + +VP+YGRG  +SD   K           PPP
Sbjct: 63  RPNNQVCPVCKSAIDGNKVVPIYGRGGDSSDPRKKVPPRPKGQRSEPPP 105

[Close]
BLAST of Carg17107 vs. TrEMBL
Match: tr|A0A0A0KZN0|A0A0A0KZN0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637750 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 4.0e-112
Identity = 213/269 (79.18%), Postives = 226/269 (84.01%), Query Frame = 0 

Query: 1   MEQNHSVH----ESEHDVSLKQNWRS------VSEDANGCFECNICLDSADDPVVTLCGH 60
           MEQN+SV     ESE DVSLKQNW+S      +SEDANGCF+CNICLDSA DPVVTLCGH
Sbjct: 1   MEQNYSVPEAYLESEQDVSLKQNWKSISTQSTISEDANGCFDCNICLDSAADPVVTLCGH 60

Query: 61  LYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120
           LYCWPCIY WLHVQISS+EPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM
Sbjct: 61  LYCWPCIYKWLHVQISSNEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120

Query: 121 AVPRRPPPSMNALPHSNAASALHPSQQXXXNYIRXXXXXXXXXXXXXXXXQQYFPQA-YS 180
           AVPRRPPPSMN   HSN++S L+PSQ+   NYIR                QQYFPQA Y 
Sbjct: 121 AVPRRPPPSMNTPSHSNSSSTLYPSQELHSNYIR--------SPSHPIYHQQYFPQATYG 180

Query: 181 DIASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRM 240
           + ASY+PSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPY  YNNSI+GN S+RM
Sbjct: 181 NFASYSPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYSPYNNSISGNASTRM 240

Query: 241 RRQEMQLDKSLNRVSIFLFCCFIICLLLF 259
           RRQEMQLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 RRQEMQLDKSLNRVSIFLFCCFIICLLLF 261

[Close]
BLAST of Carg17107 vs. TrEMBL
Match: tr|A0A1S3BTX0|A0A1S3BTX0_CUCME (E3 ubiquitin-protein ligase RMA3 OS=Cucumis melo OX=3656 GN=LOC103493490 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 4.7e-105
Identity = 203/268 (75.75%), Postives = 213/268 (79.48%), Query Frame = 0 

Query: 1   MEQNHSVH----ESEHDVSLKQNWRS------VSEDANGCFECNICLDSADDPVVTLCGH 60
           MEQN+SV     ESE DVSLKQNW+S      +SEDANGCF+CNICLDSA DPVVTLCGH
Sbjct: 1   MEQNYSVPEAYLESEQDVSLKQNWKSISTESTISEDANGCFDCNICLDSAADPVVTLCGH 60

Query: 61  LYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120
           LYCWPCIY WLHVQISS+EPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM
Sbjct: 61  LYCWPCIYKWLHVQISSNEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120

Query: 121 AVPRRPPPSMNALPHSNAASALHPSQQXXXNYIRXXXXXXXXXXXXXXXXQQYFPQAYSD 180
           AVPR                  +PSQ+   NYIR                QQYFPQAY +
Sbjct: 121 AVPRXXXXXXXXXXXXXXXXXSYPSQELHSNYIR--------SPSHPIYHQQYFPQAYGN 180

Query: 181 IASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMR 240
            ASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYP YNNSI+GN S+RMR
Sbjct: 181 FASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPPYNNSISGNASTRMR 240

Query: 241 RQEMQLDKSLNRVSIFLFCCFIICLLLF 259
           RQEMQLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 RQEMQLDKSLNRVSIFLFCCFIICLLLF 260

[Close]
BLAST of Carg17107 vs. TrEMBL
Match: tr|A0A2P5A6S6|A0A2P5A6S6_PARAD (Cdk-activating kinase assembly factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_363130 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.5e-69
Identity = 150/261 (57.47%), Postives = 178/261 (68.20%), Query Frame = 0 

Query: 9   ESEHDVSLKQNWRS------VSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLH 68
           ES+ DVSLKQ WRS      VSE+ NGCFECNICLDSA++PVVTLCGHLYCWPCIY WL 
Sbjct: 13  ESDEDVSLKQKWRSISASSTVSENENGCFECNICLDSANEPVVTLCGHLYCWPCIYKWLQ 72

Query: 69  VQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNA 128
           VQ  SDE +  QNCPVCKA+I+ +SL+PLYGRG S SDSESKK+ LG+A+PRRP PS   
Sbjct: 73  VQNDSDELDQ-QNCPVCKANISHASLIPLYGRGISRSDSESKKARLGLAIPRRPLPSGLN 132

Query: 129 LPHSNAASALHPSQQXXXNYIRXXXXXXXXXXXXXXXXQQYFPQAY-----SDIASYAPS 188
              ++  S    +QQ   NY +                QQYFP  Y     ++++S   S
Sbjct: 133 TIITSTTSTSQQNQQLHPNYFQ---------SNPRPFHQQYFPHPYRVHGANNLSS--SS 192

Query: 189 YLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLD 248
           + G AV+TSL NPTIG+FGE VF R+FG    +L PYP       G+ S RMRRQE+QLD
Sbjct: 193 HPGGAVMTSLFNPTIGVFGEMVFARMFGGSGTSLFPYPP-----AGSSSPRMRRQEVQLD 252

Query: 249 KSLNRVSIFLFCCFIICLLLF 259
           KSLNRVSIFLFCC I+CLLLF
Sbjct: 253 KSLNRVSIFLFCCIILCLLLF 256

[Close]
BLAST of Carg17107 vs. TrEMBL
Match: tr|A0A2P5E8J1|A0A2P5E8J1_9ROSA (Cdk-activating kinase assembly factor OS=Trema orientalis OX=63057 GN=TorRG33x02_223750 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 148/261 (56.70%), Postives = 176/261 (67.43%), Query Frame = 0 

Query: 9   ESEHDVSLKQNWRS------VSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLH 68
           ES+ DVSLKQ WRS      VSE+ NGCFECNICLDSA++PVVTLCGHLYCWPCIY WL 
Sbjct: 13  ESDEDVSLKQKWRSISASSTVSENENGCFECNICLDSANEPVVTLCGHLYCWPCIYKWLQ 72

Query: 69  VQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKS-HLGMAVPRRPPPSMN 128
           VQ  SDE +  QNCPVCKA+I+ +SL+PLYGRGTS SDSESKK   LG+ +P RP PS  
Sbjct: 73  VQNDSDELDQ-QNCPVCKANISHASLIPLYGRGTSRSDSESKKQPQLGLVIPHRPLPSGL 132

Query: 129 ALPHSNAASALHPSQQXXXNYIRXXXXXXXXXXXXXXXXQQYFPQAY----SDIASYAPS 188
               ++  S    +Q    NY +                QQYFP  Y    ++  S + S
Sbjct: 133 NTVMTSTTSTSQQNQHLRPNYFQ---------SNPRPFHQQYFPHPYRVHGANNLSSSSS 192

Query: 189 YLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLD 248
           +LG AV+TSL NPTIG+FGE V+ R+FG    +L PYP+      G+ S RMRRQE+QLD
Sbjct: 193 HLGGAVMTSLFNPTIGVFGEMVYARMFGGSGTSLFPYPS-----AGSSSPRMRRQEVQLD 252

Query: 249 KSLNRVSIFLFCCFIICLLLF 259
           KSLNRVSIFLFCC I+CLLLF
Sbjct: 253 KSLNRVSIFLFCCIILCLLLF 258

[Close]
BLAST of Carg17107 vs. TrEMBL
Match: tr|G9CSC7|G9CSC7_MEDTR (MAKIBISHI 1 OS=Medicago truncatula OX=3880 GN=MKB1 PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.8e-67
Identity = 140/256 (54.69%), Postives = 167/256 (65.23%), Query Frame = 0 

Query: 10  SEHDVSLKQNWRSVSEDA------NGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHV 69
           S  +VSLKQ W+S +ED       N CF+CNICL+SA+DPVVTLCGHLYCWPCIY WL+V
Sbjct: 8   SNDEVSLKQKWKSTTEDTTISSGENNCFDCNICLESANDPVVTLCGHLYCWPCIYKWLNV 67

Query: 70  QISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPP-SMNA 129
           Q SS EP+    CPVCKA I+ +SLVPLYGRG SNS++ES K  +G+ +P RPPP ++NA
Sbjct: 68  QSSSVEPDTQPTCPVCKAVISHTSLVPLYGRGKSNSETESNKLQVGLGIPHRPPPYNLNA 127

Query: 130 LPHSNAASALHPSQQXXXNYIRXXXXXXXXXXXXXXXXQQYFPQAYSDIASYAPSYLGNA 189
           L  SN  S L   QQ   NY +                Q Y P  Y    +    YLG A
Sbjct: 128 LLTSNRPSNLRHEQQLHPNYFQ--------SQSRPIHYQHYIPHLYGGHGANGLHYLGGA 187

Query: 190 VITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNR 249
            +TS +NP +G+FGE V TR+FG  D NL  YP       G+ S RMRRQEMQ+DKSLNR
Sbjct: 188 AMTSFVNPVMGLFGEMVSTRMFGVSDANLFAYPR-----NGSTSPRMRRQEMQIDKSLNR 247

Query: 250 VSIFLFCCFIICLLLF 259
           VSIFL CCFI+CLLLF
Sbjct: 248 VSIFLLCCFILCLLLF 250

The following BLAST results are available for this feature:
BLAST of Carg17107 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022976563.13.1e-12491.47E3 ubiquitin-protein ligase RMA3-like [Cucurbita maxima][more]
XP_022937391.13.5e-12090.53E3 ubiquitin-protein ligase RMA3-like [Cucurbita moschata][more]
XP_023535125.11.0e-11490.31E3 ubiquitin-protein ligase RMA3-like [Cucurbita pepo subsp. pepo][more]
XP_004141226.16.0e-11279.18PREDICTED: E3 ubiquitin-protein ligase RMA3 [Cucumis sativus] >KGN55135.1 hypoth... [more]
XP_022139659.19.0e-10876.95E3 ubiquitin-protein ligase RMA3-like [Momordica charantia][more]
BLAST of Carg17107 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G27470.11.3e-4748.51RING membrane-anchor 3[more]
AT4G03510.11.1e-3341.15RING membrane-anchor 1[more]
AT4G28270.13.1e-2531.25RING membrane-anchor 2[more]
AT2G23780.12.0e-2447.75RING/U-box superfamily protein[more]
AT1G19310.12.6e-2447.58RING/U-box superfamily protein[more]
BLAST of Carg17107 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8GUK7|RMA3_ARATH2.3e-4648.51E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV... [more]
sp|Q6R567|RMA1_CAPAN6.1e-3938.02E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=... [more]
sp|O64425|RMA1_ARATH1.9e-3241.15E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV... [more]
sp|P93030|RMA2_ARATH5.5e-2431.25E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV... [more]
sp|Q09463|RNF5_CAEEL3.1e-1944.04RING finger protein 5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1[more]
BLAST of Carg17107 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZN0|A0A0A0KZN0_CUCSA4.0e-11279.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637750 PE=4 SV=1[more]
tr|A0A1S3BTX0|A0A1S3BTX0_CUCME4.7e-10575.75E3 ubiquitin-protein ligase RMA3 OS=Cucumis melo OX=3656 GN=LOC103493490 PE=4 SV... [more]
tr|A0A2P5A6S6|A0A2P5A6S6_PARAD2.5e-6957.47Cdk-activating kinase assembly factor OS=Parasponia andersonii OX=3476 GN=PanWU0... [more]
tr|A0A2P5E8J1|A0A2P5E8J1_9ROSA1.6e-6856.70Cdk-activating kinase assembly factor OS=Trema orientalis OX=63057 GN=TorRG33x02... [more]
tr|G9CSC7|G9CSC7_MEDTR1.8e-6754.69MAKIBISHI 1 OS=Medicago truncatula OX=3880 GN=MKB1 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17107-RACarg17107-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 33..79
e-value: 1.2E-9
score: 48.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 33..80
score: 12.489
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 12..107
e-value: 2.6E-17
score: 64.4
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 33..79
e-value: 8.5E-8
score: 31.8
NoneNo IPR availablePANTHERPTHR12313:SF2SUBFAMILY NOT NAMEDcoord: 6..258
NoneNo IPR availablePANTHERPTHR12313RNF5coord: 6..258
NoneNo IPR availableCDDcd16745RING-HC_AtRMA_likecoord: 31..81
e-value: 1.47127E-23
score: 89.6707
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 25..92
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 48..57

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17107Cla009617Watermelon (97103) v1carwmB0159
Carg17107Cla023391Watermelon (97103) v1carwmB0160
Carg17107Csa1G073810Cucumber (Chinese Long) v2carcuB0186
Carg17107Csa6G517320Cucumber (Chinese Long) v2carcuB0190
Carg17107Csa4G637750Cucumber (Chinese Long) v2carcuB0187
Carg17107MELO3C007285Melon (DHL92) v3.5.1carmeB0177
Carg17107MELO3C002598Melon (DHL92) v3.5.1carmeB0172
Carg17107MELO3C016706Melon (DHL92) v3.5.1carmeB0175
Carg17107ClCG11G018130Watermelon (Charleston Gray)carwcgB0161
Carg17107ClCG01G022960Watermelon (Charleston Gray)carwcgB0164
Carg17107CSPI06G34590Wild cucumber (PI 183967)carcpiB0197
Carg17107CSPI01G12070Wild cucumber (PI 183967)carcpiB0193
Carg17107CSPI04G23560Wild cucumber (PI 183967)carcpiB0194
Carg17107Cucsa.046190Cucumber (Gy14) v1carcgyB0206
Carg17107Cucsa.123210Cucumber (Gy14) v1carcgyB0208
Carg17107CmaCh07G002460Cucurbita maxima (Rimu)carcmaB0229
Carg17107CmaCh13G006490Cucurbita maxima (Rimu)carcmaB0225
Carg17107CmaCh09G008720Cucurbita maxima (Rimu)carcmaB0224
Carg17107CmaCh01G012050Cucurbita maxima (Rimu)carcmaB0227
Carg17107CmoCh01G012580Cucurbita moschata (Rifu)carcmoB0237
Carg17107CmoCh09G008610Cucurbita moschata (Rifu)carcmoB0235
Carg17107CmoCh07G002410Cucurbita moschata (Rifu)carcmoB0239
Carg17107Lsi02G007470Bottle gourd (USVL1VR-Ls)carlsiB150
Carg17107Lsi04G013280Bottle gourd (USVL1VR-Ls)carlsiB154
Carg17107Cp4.1LG06g06950Cucurbita pepo (Zucchini)carcpeB0245
Carg17107Cp4.1LG20g04250Cucurbita pepo (Zucchini)carcpeB0241
Carg17107Cp4.1LG02g01660Cucurbita pepo (Zucchini)carcpeB0242
Carg17107CsGy1G012090Cucumber (Gy14) v2carcgybB0181
Carg17107CsGy6G034130Cucumber (Gy14) v2carcgybB0185
Carg17107MELO3C016706.2Melon (DHL92) v3.6.1carmedB0178
Carg17107MELO3C007285.2Melon (DHL92) v3.6.1carmedB0180
Carg17107MELO3C002598.2Melon (DHL92) v3.6.1carmedB0175
Carg17107CsaV3_6G050110Cucumber (Chinese Long) v3carcucB0197
Carg17107CsaV3_4G033770Cucumber (Chinese Long) v3carcucB0194
Carg17107CsaV3_1G012230Cucumber (Chinese Long) v3carcucB0193
Carg17107Cla97C01G022840Watermelon (97103) v2carwmbB0174
Carg17107Cla97C11G224210Watermelon (97103) v2carwmbB0175
Carg17107Bhi03G000323Wax gourdcarwgoB0217
Carg17107Bhi09G002793Wax gourdcarwgoB0219
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg17107Carg14694Silver-seed gourdcarcarB204
Carg17107Carg21495Silver-seed gourdcarcarB206
The following block(s) are covering this gene:
GeneOrganismBlock
Carg17107Silver-seed gourdcarcarB171
Carg17107Cucumber (Gy14) v2carcgybB0182