Carg17094 (gene) Silver-seed gourd

Overview
NameCarg17094
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_062 : 447404 .. 448592 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAACTGGTTTTCTAAGAAACAATTTCTTGATTTGGCTTCTTCTGGACCTAATCATGAAGTAATGTTGCTTCATTTATATATCTATACGAGTATTTGAGTAAGAAACCTAAGAAAGGAGCAATGGATGAAGTTCATAGTGATAACTGATACATATGCACATGTTTGATAACAGAACTCATTTGTCTCTAATTTTTACCCATTATTTGCATTATTAGACTGTTTGTTTTCTGTACTTCTTGCTTTTAACTGTCGATCTACCGTGAATTTACTATTGTTATCGATTTAACGTCAGTTGAATGAGTTGTTGGAGGAAAAGGTGCAGCCTTACTTAAAGAGTGCCAACAGCAATGTCCTCACGGCACCCATTGTGTTGAAACCACAGAACCCGGATCAGAAGGTTATACCCTTTATTTTTCAACCATTACATTTTTCCTCTTCTTGATTTTATCCCTTTACCTCTCCTTTAGTGCTTCAAATATTCTATTCACTTTAGTTCGGGATAACATAAGTTGCCATTATAAGCATTTGTATATTCTTTCAATGTTAACTAGTTATAGCACGGGTGTGTCCCGAGCCGGGAAGGGAAGTGTATAATAGATAGTCGGTGTGACGGAGAGGCTGCAGTTTTGGTCTTGTACTGAATCAGGGACTAAGCGAGGTGTAGGGAACTCTTGAATCTCCCTTGGTTTAGTTCTTGGTTATAATTATGAATTAAACTCATAGTCTCTTTAAGAAAAACATCTGTTTGAGTGTATCTTAAACATCTGTTTGAGAGCTGCTGTTGCTCTCTATGATGCACTGTGCACACACGTACTAACAAAGCACAGGTTCATCTCCTCACGGCACTACAAGGATTTCATTTAACATGTTAAAATTGTTTCAGAGAAATCAAAGGCGACGATTTTGGTTCTTTTGACAACGTGCCATCTTTTCACGTCAAAGCGCATCTGGTGTATCCTAAGCTAGCTCTGAAAGACAAGATTCATGGTGACGTTCTTTCTTAAGGTACCTTGCCTCTTTTTTTTCGCTTAACGCAGCTGGAAAGTGCACTCGACTAGTGTCCCCGCCCCCGCCCCCGCCCCGGCCCCCGGAAAATAAGAAACGAAGAGTAAAGAAAGTTAAGAGAGAAGAGGCTAGTGTGGTTTTTGTACTCTTAAGATTGCCCACTAGAACCTCTTATTTTT

mRNA sequence

ATGAGTAACTGGTTTTCTAAGAAACAATTTCTTGATTTGGCTTCTTCTGGACCTAATCATGAATTGAATGAGTTGTTGGAGGAAAAGGTGCAGCCTTACTTAAAGAGTGCCAACAGCAATGTCCTCACGGCACCCATTGTGTTGAAACCACAGAACCCGGATCAGAAGCACGGGTGTGTCCCGAGCCGGGAAGGGAAGTGTATAATAGATAGTCGGTGTGACGGAGAGGCTGCAGTTTTGGTCTTAGAAATCAAAGGCGACGATTTTGGTTCTTTTGACAACGTGCCATCTTTTCACGTCAAAGCGCATCTGGTGTATCCTAAGCTAGCTCTGAAAGACAAGATTCATGGTGACGTTCTTTCTTAAGGTACCTTGCCTCTTTTTTTTCGCTTAACGCAGCTGGAAAGTGCACTCGACTAGTGTCCCCGCCCCCGCCCCCGCCCCGGCCCCCGGAAAATAAGAAACGAAGAGTAAAGAAAGTTAAGAGAGAAGAGGCTAGTGTGGTTTTTGTACTCTTAAGATTGCCCACTAGAACCTCTTATTTTT

Coding sequence (CDS)

ATGAGTAACTGGTTTTCTAAGAAACAATTTCTTGATTTGGCTTCTTCTGGACCTAATCATGAATTGAATGAGTTGTTGGAGGAAAAGGTGCAGCCTTACTTAAAGAGTGCCAACAGCAATGTCCTCACGGCACCCATTGTGTTGAAACCACAGAACCCGGATCAGAAGCACGGGTGTGTCCCGAGCCGGGAAGGGAAGTGTATAATAGATAGTCGGTGTGACGGAGAGGCTGCAGTTTTGGTCTTAGAAATCAAAGGCGACGATTTTGGTTCTTTTGACAACGTGCCATCTTTTCACGTCAAAGCGCATCTGGTGTATCCTAAGCTAGCTCTGAAAGACAAGATTCATGGTGACGTTCTTTCTTAA

Protein sequence

MSNWFSKKQFLDLASSGPNHELNELLEEKVQPYLKSANSNVLTAPIVLKPQNPDQKHGCVPSREGKCIIDSRCDGEAAVLVLEIKGDDFGSFDNVPSFHVKAHLVYPKLALKDKIHGDVLS
Homology
[Close]
BLAST of Carg17094 vs. NCBI nr
Match: XP_022976513.1 (uncharacterized protein LOC111476887 [Cucurbita maxima])

HSP 1 Score: 72.8 bits (177), Expect = 9.1e-10
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 21  ELNELLEEKVQPYLKSANSNVLTAPIVLKPQNPDQK 57
           +LNELLEEKVQPYLKSANSNVLTAPIVLKPQNPDQK
Sbjct: 377 KLNELLEEKVQPYLKSANSNVLTAPIVLKPQNPDQK 412

[Close]
BLAST of Carg17094 vs. NCBI nr
Match: XP_023535106.1 (uncharacterized protein LOC111796624 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.8 bits (177), Expect = 9.1e-10
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 21  ELNELLEEKVQPYLKSANSNVLTAPIVLKPQNPDQK 57
           +LNELLEEKVQPYLKSANSNVLTAPIVLKPQNPDQK
Sbjct: 377 KLNELLEEKVQPYLKSANSNVLTAPIVLKPQNPDQK 412

[Close]
BLAST of Carg17094 vs. NCBI nr
Match: XP_022936132.1 (uncharacterized protein LOC111442822 [Cucurbita moschata])

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-08
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 21  ELNELLEEKVQPYLKSANSNVLTAPIVLKPQNPDQK 57
           +LNELLEEKVQPYLKS NSNVLTAPI+LKPQNPD K
Sbjct: 377 KLNELLEEKVQPYLKSVNSNVLTAPILLKPQNPDPK 412

[Close]
BLAST of Carg17094 vs. NCBI nr
Match: XP_022139600.1 (uncharacterized protein LOC111010460 [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 21  ELNELLEEKVQPYLKSANSNVLTAPIVLKPQNPDQK 57
           +LNELLEEK+QPYLKSANSN+LTAPIVLK ++ DQK
Sbjct: 377 KLNELLEEKLQPYLKSANSNILTAPIVLKSESQDQK 412

[Close]
BLAST of Carg17094 vs. NCBI nr
Match: XP_004141219.1 (PREDICTED: uncharacterized protein LOC101204848 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 6.7e-05
Identity = 26/36 (72.22%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 21  ELNELLEEKVQPYLKSANSNVLTAPIVLKPQNPDQK 57
           +LNELLEEK++PY+ SANS+VLTAPIVLK ++P+QK
Sbjct: 377 KLNELLEEKLRPYVTSANSHVLTAPIVLKSKDPEQK 412

[Close]
BLAST of Carg17094 vs. TrEMBL
Match: tr|A0A1S3BTV9|A0A1S3BTV9_CUCME (uncharacterized protein LOC103493478 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493478 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.8e-05
Identity = 27/36 (75.00%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 21  ELNELLEEKVQPYLKSANSNVLTAPIVLKPQNPDQK 57
           +LNELLEEK++PY+ SANS+VLTAPIVLK Q+P QK
Sbjct: 376 KLNELLEEKLRPYVTSANSHVLTAPIVLKSQDPVQK 411

[Close]
BLAST of Carg17094 vs. TrEMBL
Match: tr|A0A1S3BTT4|A0A1S3BTT4_CUCME (uncharacterized protein LOC103493478 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493478 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.8e-05
Identity = 27/36 (75.00%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 21  ELNELLEEKVQPYLKSANSNVLTAPIVLKPQNPDQK 57
           +LNELLEEK++PY+ SANS+VLTAPIVLK Q+P QK
Sbjct: 300 KLNELLEEKLRPYVTSANSHVLTAPIVLKSQDPVQK 335

The following BLAST results are available for this feature:
BLAST of Carg17094 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022976513.19.1e-1097.22uncharacterized protein LOC111476887 [Cucurbita maxima][more]
XP_023535106.19.1e-1097.22uncharacterized protein LOC111796624 [Cucurbita pepo subsp. pepo][more]
XP_022936132.12.9e-0888.89uncharacterized protein LOC111442822 [Cucurbita moschata][more]
XP_022139600.11.6e-0680.56uncharacterized protein LOC111010460 [Momordica charantia][more]
XP_004141219.16.7e-0572.22PREDICTED: uncharacterized protein LOC101204848 [Cucumis sativus][more]
BLAST of Carg17094 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg17094 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg17094 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BTV9|A0A1S3BTV9_CUCME5.8e-0575.00uncharacterized protein LOC103493478 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BTT4|A0A1S3BTT4_CUCME5.8e-0575.00uncharacterized protein LOC103493478 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17094-RACarg17094-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17094Cla023377Watermelon (97103) v1carwmB0160
Carg17094ClCG11G018010Watermelon (Charleston Gray)carwcgB0161
Carg17094CmaCh09G008580Cucurbita maxima (Rimu)carcmaB0224
Carg17094CmoCh09G008500Cucurbita moschata (Rifu)carcmoB0235
Carg17094Cp4.1LG06g06850Cucurbita pepo (Zucchini)carcpeB0245
Carg17094Bhi09G002809Wax gourdcarwgoB0219
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg17094Silver-seed gourdcarcarB171
Carg17094Silver-seed gourdcarcarB204
Carg17094Silver-seed gourdcarcarB206
Carg17094Cucumber (Gy14) v2carcgybB0182
Carg17094Cucumber (Gy14) v2carcgybB0181
Carg17094Cucumber (Gy14) v2carcgybB0185
Carg17094Cucumber (Gy14) v1carcgyB0206
Carg17094Cucumber (Gy14) v1carcgyB0208
Carg17094Cucurbita maxima (Rimu)carcmaB0225
Carg17094Cucurbita maxima (Rimu)carcmaB0227
Carg17094Cucurbita maxima (Rimu)carcmaB0229
Carg17094Cucurbita moschata (Rifu)carcmoB0237
Carg17094Cucurbita moschata (Rifu)carcmoB0239
Carg17094Cucurbita pepo (Zucchini)carcpeB0241
Carg17094Cucurbita pepo (Zucchini)carcpeB0242
Carg17094Wild cucumber (PI 183967)carcpiB0193
Carg17094Wild cucumber (PI 183967)carcpiB0194
Carg17094Wild cucumber (PI 183967)carcpiB0197
Carg17094Cucumber (Chinese Long) v2carcuB0186
Carg17094Cucumber (Chinese Long) v2carcuB0187
Carg17094Cucumber (Chinese Long) v2carcuB0190
Carg17094Cucumber (Chinese Long) v3carcucB0193
Carg17094Cucumber (Chinese Long) v3carcucB0194
Carg17094Cucumber (Chinese Long) v3carcucB0197
Carg17094Bottle gourd (USVL1VR-Ls)carlsiB150
Carg17094Bottle gourd (USVL1VR-Ls)carlsiB151
Carg17094Melon (DHL92) v3.5.1carmeB0172
Carg17094Melon (DHL92) v3.5.1carmeB0175
Carg17094Melon (DHL92) v3.5.1carmeB0177
Carg17094Melon (DHL92) v3.6.1carmedB0175
Carg17094Melon (DHL92) v3.6.1carmedB0178
Carg17094Melon (DHL92) v3.6.1carmedB0180
Carg17094Watermelon (Charleston Gray)carwcgB0164
Carg17094Watermelon (97103) v1carwmB0159
Carg17094Watermelon (97103) v2carwmbB0174
Carg17094Watermelon (97103) v2carwmbB0175
Carg17094Wax gourdcarwgoB0217