Carg17049 (gene) Silver-seed gourd

Overview
NameCarg17049
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_062 : 226272 .. 226748 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACGTTTAACGTTTGAAGAATTGCAAGAACATGATGGGGAAAAGACGATGAGTCCATCGACAACAACAAATGGAATGGATACTTGTTCAGGACAGAAAGCTATTCAGTCTGTACAAGAACAAGAACATGATGGAGGAAAGTGTTGCACTGACGAAGTTGGTGCTGCAAGTGAAACACACATCCACGAGGGGAACGAGTCGTTAGAAGTAGAAGTCGTTGGCACGGAACGTGAGACGTTCAGCTTACAGAAGGAAAGAGCTGGGATGGGGTTCGTGCAGTGGTCGGTATGACGGGATTTGTAGAAGCTGGTGTTCTAACTTTTAGGTAAAAACAAGGTTTAGAGAGAGGAGTAGAGTTAAAAGAGGAAAGGAGTTTGCAGGACCATTTTTGAAAGCTGTCCAGTGAACATGAAGTTTCTAAGATAGGGAATGAATGACCAAGTTTGGTTTTTTTTTTTTTTGAAGGTAGGATAG

mRNA sequence

ATGAAACGTTTAACGTTTGAAGAATTGCAAGAACATGATGGGGAAAAGACGATGAGTCCATCGACAACAACAAATGGAATGGATACTTGTTCAGGACAGAAAGCTATTCAGTCTGTACAAGAACAAGAACATGATGGAGGAAAGTGTTGCACTGACGAAGTTGGTGCTGCAAGTGAAACACACATCCACGAGGGGAACGAGTCGTTAGAAGTAGAAGTCGTTGGCACGGAACGTGAGACGTTCAGCTTACAGAAGGAAAGAGCTGGGATGGGGTTCGTGCAGTGGTCGGTAGGATAG

Coding sequence (CDS)

ATGAAACGTTTAACGTTTGAAGAATTGCAAGAACATGATGGGGAAAAGACGATGAGTCCATCGACAACAACAAATGGAATGGATACTTGTTCAGGACAGAAAGCTATTCAGTCTGTACAAGAACAAGAACATGATGGAGGAAAGTGTTGCACTGACGAAGTTGGTGCTGCAAGTGAAACACACATCCACGAGGGGAACGAGTCGTTAGAAGTAGAAGTCGTTGGCACGGAACGTGAGACGTTCAGCTTACAGAAGGAAAGAGCTGGGATGGGGTTCGTGCAGTGGTCGGTAGGATAG

Protein sequence

MKRLTFEELQEHDGEKTMSPSTTTNGMDTCSGQKAIQSVQEQEHDGGKCCTDEVGAASETHIHEGNESLEVEVVGTERETFSLQKERAGMGFVQWSVG
Homology
[Close]
BLAST of Carg17049 vs. NCBI nr
Match: XP_023535996.1 (LOW QUALITY PROTEIN: increased DNA methylation 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-30
Identity = 76/90 (84.44%), Postives = 78/90 (86.67%), Query Frame = 0 

Query: 1    MKRLTFEELQEHDGEKT----------MSPSTTTNGMDTCSGQKAIQSV-QEQEHDGGKC 60
            MKRLTFEELQEHDGEKT          MSPSTTTNGMDTCSGQK+IQSV QEQEHDGGKC
Sbjct: 1258 MKRLTFEELQEHDGEKTMDDREGNPAPMSPSTTTNGMDTCSGQKSIQSVQQEQEHDGGKC 1317

Query: 61   CTDEVGAASETHIHEGNESLEVEVVGTERE 80
            CTDEVGAASET IHEGNESLEVEVVGTER+
Sbjct: 1318 CTDEVGAASETRIHEGNESLEVEVVGTERD 1347

[Close]
BLAST of Carg17049 vs. NCBI nr
Match: XP_022936023.1 (LOW QUALITY PROTEIN: increased DNA methylation 1-like [Cucurbita moschata])

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 75/89 (84.27%), Postives = 77/89 (86.52%), Query Frame = 0 

Query: 1    MKRLTFEELQEHDGEKT----------MSPSTTTNGMDTCSGQKAIQSVQEQEHDGGKCC 60
            MKRLTFEELQEHDGEKT          MSP+TTTNGMDTCSGQKAIQSVQEQE D GKCC
Sbjct: 1258 MKRLTFEELQEHDGEKTMDDREGNPAPMSPATTTNGMDTCSGQKAIQSVQEQEPD-GKCC 1317

Query: 61   TDEVGAASETHIHEGNESLEVEVVGTERE 80
            TDEVGAASETHIHEGNESLEVEVVGTER+
Sbjct: 1318 TDEVGAASETHIHEGNESLEVEVVGTERD 1345

[Close]
BLAST of Carg17049 vs. NCBI nr
Match: XP_022976399.1 (increased DNA methylation 1 isoform X1 [Cucurbita maxima] >XP_022976400.1 increased DNA methylation 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 121.3 bits (303), Expect = 1.8e-24
Identity = 67/89 (75.28%), Postives = 72/89 (80.90%), Query Frame = 0 

Query: 1    MKRLTFEELQEHDGEKT----------MSPSTTTNGMDTCSGQKAIQSVQEQEHDGGKCC 60
            MKRL ++ELQE +GEKT          MSPSTTTN MDTCSGQK+IQSVQEQ    GKCC
Sbjct: 1264 MKRLMYQELQEQNGEKTMDDCEGNPAPMSPSTTTNEMDTCSGQKSIQSVQEQ--SDGKCC 1323

Query: 61   TDEVGAASETHIHEGNESLEVEVVGTERE 80
            TDEVGAASETHIHEGNESLEVEVVGTER+
Sbjct: 1324 TDEVGAASETHIHEGNESLEVEVVGTERD 1350

[Close]
BLAST of Carg17049 vs. NCBI nr
Match: XP_022976401.1 (increased DNA methylation 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 121.3 bits (303), Expect = 1.8e-24
Identity = 67/89 (75.28%), Postives = 72/89 (80.90%), Query Frame = 0 

Query: 1    MKRLTFEELQEHDGEKT----------MSPSTTTNGMDTCSGQKAIQSVQEQEHDGGKCC 60
            MKRL ++ELQE +GEKT          MSPSTTTN MDTCSGQK+IQSVQEQ    GKCC
Sbjct: 1260 MKRLMYQELQEQNGEKTMDDCEGNPAPMSPSTTTNEMDTCSGQKSIQSVQEQ--SDGKCC 1319

Query: 61   TDEVGAASETHIHEGNESLEVEVVGTERE 80
            TDEVGAASETHIHEGNESLEVEVVGTER+
Sbjct: 1320 TDEVGAASETHIHEGNESLEVEVVGTERD 1346

The following BLAST results are available for this feature:
BLAST of Carg17049 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023535996.12.2e-3084.44LOW QUALITY PROTEIN: increased DNA methylation 1 [Cucurbita pepo subsp. pepo][more]
XP_022936023.11.4e-2984.27LOW QUALITY PROTEIN: increased DNA methylation 1-like [Cucurbita moschata][more]
XP_022976399.11.8e-2475.28increased DNA methylation 1 isoform X1 [Cucurbita maxima] >XP_022976400.1 increa... [more]
XP_022976401.11.8e-2475.28increased DNA methylation 1 isoform X2 [Cucurbita maxima][more]
BLAST of Carg17049 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg17049 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg17049 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17049-RACarg17049-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15