Carg17003 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17003
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Flap endonuclease 1
Location	Cucurbita_argyrosperma_scaffold_061 : 1046725 .. 1056566 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCGTCTTCCAAAGCGGTTCCTTCTCTGCTACTGCGACGCCTTGCCATGGGCATTAAGGTATCAGCCTTCACTCTCTACATCATTTTCCGCTCCCTTGCTCTGCCACTCTAGTTTTCCCCTTTTCCATTTTCACATCCCTGGTTTTCTTAGGGTTTAACCAAGCTTTTAGCTGACAATGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTTGGACGAAAAATTGCAATTGATGCCAGCATGAGTATCTATCAATTTCTTGTCAGTACCTCTTTCTCCAATTTTTCCTTTTTTTCCAGTTAAAAACTACTCTGGGCATCTCATATATTTGCGTGAACTAATGCAGATTGTCGTGGGAAGAAGTGGGACTGAGATGTTGACCAACGAAGCTGGTGAAGTCACTAGGTTGGCTTTAGAAAAATTTATACATTTTTACTTGAGTTTTAAAATTTGTGAATTATCTACTTGTTTTTGCTTGATATATTCCATTTTTCATGTTTTTTTAATGTCAAACTCTAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAGTTAAGCCAGTGTAATTTCTCTGTGTCCTGGCATTTCAATTCCAAGTTTTGTCATGAAAATTTTGTCTGACACGGTTTTCTTTTTATGGGAACAAATGTACTCAGCTATGTGTTTGATGGAAAGCCTCCTGATTTGAAAAAGCAAGAACTTGCAAAACGGTAAGTATGCTATCTCATTGTATCTCATTTATTCCGTTCAAAGGGGCAGTCATGATCGTTGTGCCTTATGTAAATTATGTATGCAGTTATTCAAAGAGAGCAGATGCTACTGCAGACCTGGCAGATGCAATTGAGGTACTTTCATTCTTGTACTTTTGTTTTTTCTTCCTTGTAAAGCACGGAAGACAGAAAACTAATTCCAGCAACTGCCCCTTTTGTTATTCTAGGTTGGAAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTCAAGGTTAGTTAACTGCTTTAACATTTTTCCTCAAGAACGTACATATTACATTGTAAATCGATTTACATACTCTCACAAATAATCACTAAAGGATTGGAGCAGCATGCAAATATTTTGGAAGTTGTATAATATTACAATCAATCACATGCATATTGTATAATTTGGGGTTAAACTTGCAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATCGAGGTGACAATACACTATATTTCAGATGTTCATTCAAGTAATCCATTGCTTCAGTTGTAACATGGTTGAGTACATTGCAATTGTTTTTGGATGTTGCAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGCAAGTATCCCTCTCCTGCATGATAATGTGTCTTTTGTTTCTTGAATGTGAACCGATGAACTAAGAATCAAGGGGCAAATATTGACCTTCCTGTTACTAAAATGTAGGGAAAGATTGAATGAAATACAGATTTGGTAACTTTATTTGTGTACTCTATATATTTCAATGCTTCCAAGCACAATGAATTCTGCAATGTAAAGATTTAGCTAGCTATACATGTTTGTTCTCTCATTCCAATTTTAAATTTAGAATAAATTTAAATGTCATAAAACAAATTGTTCTCTCTCCAGGGATGCAATATTCTCTGATGAAATAAATTGTAGCATCTGCAAAAGCTACTTGAGTTTTTGATCTCGCCCTTTTGTATTTAGGTGATGAAGATTTAGTTCTTCTCATTATAACATTTTATTATTATGAATCCATGATATTCAGTCACCATCACCAACATATTTCCTTTGCCTTGTAGACTATTTTGGACACCCTGGAAAATCCTTTTTGATAGAAATAAGATTCCATACTTTAGTATGAATTTTGAATGTCAGACTTGGAACGTAACTGCAGTTTTGCTTTCACAATCTGTTTTCTCTTTCTCTTCACTGAAGAGTTCAAAGGTTGAGACCACTGAAGGAGCTATGGTCTGATGTAGAGTATATTGGCTCGCAAGTGTAGGATTATCAGTCAGTGTGTCCAATAGATTTTGATGAAAAAGAGAAATGAAGGGAGTTTTTGATTTTCGAAACACCTATCCAAGTTTCAATAGAATAATGTCATTATGGAGGGTGATTACGCTAAGACACCTATCCAAGTTCCTCCCACGAATTTGGTCTTATCAACATAAAGTACACCTAGTTTGCATGCTGAGAAGGTTGATTTAAACGATGGCCTCCCAAAGGTAATCAGTCAACCAATGGCATGTAATCAGTCAATTGACTTTATTGCCCAACTAGAGACTTTCAATGCAAAGAATAATGTCATATTGGAGAGGAATTATGCCAAGACGCATATTCAATCTCCTCCCGTGAATTTGGTCTCTAAATATCAAAGAAATTAAAGAGAAGTACACTGAAATTAATTCCAATTTGTATACAATAAAATGTTCTTCGGCCCCTTTGTCTTCCCAATTTCCTGTAACTTTTAACATTAATTCAGATGCGTTGGAAGAGTCTTGATCAACAATTTTGATACCAATTGAATTAGGTGACGATTCATTATAATGGTTCAAAGGTTTACTCCCAAACATTAATCTCCACGTACTATGCTATTGGACCTGATGATGTTTTTTCTTTTTTTTTTCTTTTTTTTTTTGACAAAATTCTTAATTCTTCATAAGTAAGAGCCTTATCTAGTATTGTTCACATTACCATCGACTCTGATGATGAATTCATGGTGAGCTTAAACAGTGTAGAGATTGAACAACAATGACATTCCCAAGCTTTAGATGATTTTATCTGAAGAGCTTTCGTCATTAAATCTTGATTCTCTGTTTCAAACTCTAAATAAGGAAGTCTTAACTACCAAGGAAGATTTGGATATGATACTGAATGGCTTATTGGTTAATTCGCCACATCTCCTTCCATCTTTGAAACATTTCATCTATAATTGAAGCTAGTTGTCAACATTTTTGTGAAACCTACCGTTGCTATCCGAGGGGGTTGGCCAAAAGTGTTAATAGCAGATTGATTGCCTTGTTCGACAATGAAATCAATTCTTGGAATACTGGAGATTTGGGAGATTATTTTAGAAGTCTTAGCTTGAAGAAATTTTTGCAACACCATTACCTTGTGTTTGACCTCCAGACTAAGACTTACATGAGGATAGGTAGTAAGGGAAATACTTCTAATGTTAATTAATTAGCAGTTAGTTGTACGACCTTTTGTGATTGTTGCCTTTATAATCATCTTGCTTTGTACTTTTGAGGTTAGGTGTTATTTTGTTAAACTGAAAATATCAAGGTGCGGTCATTTGAAAGGGTTTTTTTTGGACAATATTGTTCTTCATTCTATGTCTTGGTGTAATTGTTCAGATATTTTTCATTCTTATATGCCAACACATTTGTCCAATTGGAGAATTTTATTGTAACTCCTTTACATTGATGCTCTCTTCCCTCGTTTGTAGTTTCATACATCAACAAAAGTTTCTTCTAAAACAAAAGGCAAGCTAGGAAACTCTTCAAACTACTGGAGATACACTATTCCTACCAAGTATCTAGGACACTCGTTTCCACTCTTCCCCTTTTCTGCCACATGCTAAAAATCTTGTTTGACATTTTCCAATTATCTGCACCCAAGGGCTATATGACCTTTTACCCATGACAATCGATTCATGACTCCCTTCATTGCTTCTAGTCTTACCAAGTACCTAGGAGACCCCCTCTTTCCCCATTGCCCTCATTTCATGTTTAGATCAGGGGATGCAATGGGGCTTGGAGGCTGCTAGGGTTGGGGCATTGAGGGTAGGCTGGGTTCCCGACCTAGTAAAATGCATGCTTTTTTTGTGGTAGGATCTATGAATTTAGGTGGATTTGATTTTGTAAGTTTTGCACACTAAATGAGTGTGTACCTGGATTTTTTTCCTTTTTTACCTGGGTCCTTCGGTGCTTTAATTCTTACATTCATTTTTAATTAATAAGAGGGGCTTGTTCTCAAAGTTTGTATATATTTCAGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGCAAAGGTGATTTGTCTCCATCTTAATTTGTCTATTTACTTATCTATAGGAAATCAAGTTATAAATTATAGCTCGTATATATTTATAGCTGTATTTTCTCTTTTCCTTATAGGTTTAGATTGATTGCATTTTTTTTGCTTATCTAATTGGGCGTCTCTTTGTATGAATCTGATTCTTCTCTACTCTATGAAATATAAAAAATATTATTGTTCATAGATAGCTTCATGGTATTAGAGTTGTGAAACTATTCAATTTGGAAAGGACATCACCCTAAAAAGGTGAAGTTCTTCCTTTGGAAAATAGCGCATAAACCCATTAGCACAAGTGAAAATCTTCAAAATAGAAAGCCTTACATGACCCTATTTCCAAATTGGTGTCCATTATGCAAGAAAGGAAATGAGTCACAAAGCCACTTATTTATGCAATGCACATATGCTCAGAATTTGTAGACAACGATTCTCAATATAATCAGAAGGTATCTCAGATTTCCTAGGGAGAGAAATAATCTATTGGACATGACCTTAACGTACCACCCCTTCAAGAATCCAAAAGCCCTACTATGGAAAAACTTAATTGACTTTTTTTTGGAACCTGTGGAAAAAATTAAATAAAAGAATATTCGTGGAAAAGACATAGACTTATACAAAACTCTTCGTCAATGTTGTTTACCAAGCTATATCTTGGTGTAAATGGTCTAATATTTTTATTTTCTATACTTATACCTCCCTCATAAGAGAATTACATGAATTACATGTCACTTTTATAAGAGAGAGACTAACTAAATCTAAATTAATAGATAATCTAAATAAGTCTCTAGATACTAGGTAATCTAAATTTAAATAAATTCAACCCGATAAATTAGGTAGGTCAAGTACTTGGTTCTCCTATTGACCGTAAGTCGAGATCAGAGATTGTTCCAGTCACTTGGCATAGTAAGGAACAATTAGTTGTAGCTTGAAGTACTACTGAAGTTGAGTTTCGATCACTAGTTCATGGGATTTGTGAAGGAATTTAGTTAAAAGGCCTTCTCATTGAACTAAAGGTCAAGATAGAAGACATCACAGAATTACCGTGTGATAACCAATCAATCATAGTTATTGCAATGAATACAATACACCATGACGGAATAAAGAAGGTCGAGATAGATTGACACTTCGTCAGTGAGAAATTGAGACAAACACTGTTACACTGAGATATGTACCTTCCCAACAAGTTGCAGATTTATTAACTAACGCTTTACAACGAATTCATCTTGATGGTTTAATTTCCAAGCTTGGCGTGACAAGCATGTACTATCCAACTTGAGGGGAGTGTAGAAAATCAAGCTGTGAGTCAGGGCTTTATGTTTGGGATTGTTTCCGTGTATATGTTTATAGTTGTATTTTTCTTTTCCTTATAGGTTTAGATTAGTAGTTTGCTTATTTGATTCTCTTTGTATAAATCTGGTTTTTCTCCACTCAATCAAGTACAGCTTCAGTGATCATTTACCAATAATTTGTTTCATTTCAGATTTTGGAGGAGCTGAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATCCGAGGTATTTGGATTCTATATAGTATATATGTTTTATTGCCTCCTACTGATGTTGATGCTCAAGTTTTATTGTGCTGTTCCAATTTTAGCCCTTACTTATGCATTTACTCCACAGGTATAGGGGGACAGACTGCTTTAAAGCTTATCCGTCAACATGGGTCTATAGAAAATATACTAGAGAACATCAATAAAGAAAGGTGACCTTTTTCTAGGATTGAAATATATATCATAAAGTGCAATTTTATCTTGAATATGCTCAAACTTGTTCACATGATTTGATGAATGCATGGGTATACTTAATTTGTTGGATATGGTCTGGTAATTATGAATCTTGAGATGATGTCCTAGCCAATTTGAATCTTGTTGAATGAGAAGCCTTCTATGTATCTGTATTGCATTGAATCCTATTAGTAGCCAGTGACTGTTTTAGATAATCTTGTAGTGTAGAATTCTTCAATCTTGTCAGATATCGTTAAGCATATGTAGTGCAATCATTTGGAGAATTTATTACCTTTCATGATTCTGTTTTCTAAATTATTCTATTCCTGTTTAAGGCATTGTTATCTTGTAAAGTAAGTAGATAGTCTTATCTTTCTCTTATATTTATCTCAGTTAAAGTATCTTTCAAATAGCTTTGATAAGAGCGTAGTGACCGGAAAGCTGTAAACTTGAGTTGTGCAACTTCAAAATATTTCTTATTAAACAAAGTCTATCTAGATGAGAAGGAAAGAATAACGGTACAACCCATGGCAGATCCAAAGCTTTAAGTCGGCAGCTATATAGAAATAAAGTTAATTACAAGTTTTGTCCTTAGATTTTGAGTGGTGTCTGTTTGGTTTTTGAACTTTTAGAAGTGTTTAATAGATCCTTGAACTTTCAAGTTTGTTTCTAATAGATTTTGGACAAATCTGACTATTATTTTTTTAATTAATTAATCTATTAACTATAAGTTTGAATTATAGTTTAGTGGAACCTTATATAAGTTCAATTTTATGTCTAATAAATCTATAAATTTTAAAAATTTTAAAAATTCAAGGATTAAATTTATAATTTATTGTAGAAATAATTCTGACCACATTGATATACTGATATATTGCTATCAGTTGGTAGATTTTGATAATAAATTGACTAAATTGTAAAATTTGTCCTAAACTTTCATGATTGTGATTAAAAGTCCCTAGCTTTAAAAGTTTGTAACAAGTCACTAAACTTCCAACTTTCAATTGAGAGGTTGCTAAATTTTCAAATTTGTATATAATGTGTCAAATTACAGAAGAGCAACAAAATACCGAATGCTTCTTGTTTCCCATATTATTATTATTATTATGTGTTGTAAACAGGTATCAAATTCCAGAGGGTTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGTAATTTAAATTTTCTGGTTTAAAAGTCATCTCCTGACTATTTTCTTTCTTCATTTTATATATGTACGCGCACACACACGAACATATTTTGATACTAAAGTTTTAGTTCTCCCGCATGCACATGCTTGTTATGATATTAAAGTTGTATTCTCATATCTATTACAGGGCTTAATCTCATTTTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGTTTATAATCCTGATAATCTCAAGTTTTATATCATACAGTTTTTATTTATTTATTTTTTTTTAATGAAAGTCATTTAAATTAAATCTTCAAGAAAGTTTACGTCTCATACATCATTTTCTGTTCTTTCTCCAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGTAAGTGTTAGCTATATACTTTCATTTATTTCTTAAAAATAAAAGTTCTTCATCTCTTTGGTCGATCGTGCTGTTTATTCCTCCTTTTCAGGATGGAGTCATTTTTCAAGCCCGTAACGAATCCTTCAGTATCCACTAAAAGAAAGGTATATTGTTAGCTATCTACTGATATCTGATATTAGGATTGATGCATTTTAAGTTCCATTCTATAATTCTAATAAACCTATTAAATTTCGAATTTTAAGACCAACAGTATTTTAATGGCATTATGACTGTTACATCTAACTCCTCTGCAAATTTTCCTTCATTTTGAATTTGTTGATTTACCATTTTTTTTTAAACTGAGAATCAATTATGTTGATCTTCAACATCAACATTGATTTAAGCTTCACAGTTCATTGGTATTGACTATATTTTTTGTCCGACCGTCCATGATCTGTCCAAAAGTACTTTTCTGCCTCTTTCTGTCTAATTTACTTCAGACTCTCCATTTCCCTCTATTATCTCAAATTACCTACAAAATCCATTAAACGAGAAGCATTAAAAATAATTCGAGTTCTTAAAGAACTGGTGGGATATAGAGACCTAATTGTCTCTACCTTTCTATACCGAATGACAGGTAACCAAATGTGTACTTAAGTCTCCTAAACCAGGAATCCAGCATAAATACTCTCCACAAGCTTTTTATCCGTCAAGGACAAAGGTCATTGGCAGCCTAGGGACGCCAATATTAGACCATTCTTCCAAGTACTCAGGGTCAAGGCCATTAGTCATGGCTGCTTGCTTCGGAACATGAAGCTGAAAACGCTGGTGAAACTGGTTGCTTTGGTTTTTAGTGATGTACTTGAAATCCTCATCATCAATTTCCTTGAACCTTATTGTTCATCTTCAAATATATACATATGGAAACTATAATTATGGAGCTCAATGTGCTGGATTTGACAGTCCTGATTAATTAAAACCCACCCTGTAGCTCTATTACATTAAAAAAGTTGGTGCGTTGTGTAGAAGCAGTTTATGACGCATGATTCTGGAGTTTTTTGGGGGAAAAAAAGCGATTGCTAGAAATAAGACATTACACATCATAAGCAACACACTGATCAATCATCTTGCCGACTTTGATTTTTAGTTTTAGTTGTGGTGGAGTATTTATGATTAATGGTCGTTGCTTTTATTAATGTACATTTGCTCTTTACATTTTCATTTGCATTGTGGCACCACATTTTTCTGCAACTATGACCCATTAATTAAAGTTGGGATTCTTGACTTCAGCAATCTATACCTTTTATTTTATTTTATTTTATGTTATCATTTTTATTTTTACGATTAATATTATCTCTGTTTCACTTTGTATTTGTAATCCAACAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAAGAAAGTAGGAAGAGTTGGTTCCATCGCCACTGTCGAATTTGTGCAACGAACTTGCTGATTTTAAGTAATTTATAAGCTTTAGGTGGCTGCAAATTTAGGAGATAGTTGCGACATTAATGTTCTTGAATGATTGGTCTTGGTGCAATTTTAGGAGGTATATCTTTGAGTACTTGCGGACATGCCTTTTGTGACTGCAATCTATTAGTTTTAAGTTGCAGGCCCTCTCAAGAATGATGATTTTGTTTCTGCTCTGCAACCTGTATATTTCTTAACTAAATGAATAGTGAAGTAAGATCTTATAGGTTTGCTTTTCCAATTCTTAGAACTCCTGGATTGATTGGAGAGGATAGTTGAGTTGCCAAATTTGAAAATTGAATTCATGAATCTCTCTATGTCGATTAGAAATTTAGTCTTGTATTCCAATTTGCATGGTTTTGCATGGAAGGAAGCTTGTTGATACATATATCTGAATCATATTTGTTGCATTTTATCAACTTGATCATGAATGTTGATCATGTACTCCAAGAATTCTCTGCTAGAAGTGTTACTGCATTGCAAATATCTGTGGTAGGAAATGAGGAGCTCATGAGTGTTAGTTTGGAGCATTAAAGAAAAGAGTAGCTACGAGGTGTGTAGCTATAACTTTTGATAGGGATGGGCACAAAACTTAGCAGCTAGCACATAATCTTGTAATCCTAAAATTGCACCAAGGCTTCGTGTGCCAATGGCAGAGTATTTCTTGATTATGGGTTTGCTATGGACTCCTCAAAAGGCCTCATGCCAATGG

mRNA sequence

CTTCGTCTTCCAAAGCGGTTCCTTCTCTGCTACTGCGACGCCTTGCCATGGGCATTAAGGGTTTAACCAAGCTTTTAGCTGACAATGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTTGGACGAAAAATTGCAATTGATGCCAGCATGAGTATCTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACTGAGATGTTGACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAGTTAAGCCAGTCTATGTGTTTGATGGAAAGCCTCCTGATTTGAAAAAGCAAGAACTTGCAAAACGTTATTCAAAGAGAGCAGATGCTACTGCAGACCTGGCAGATGCAATTGAGGTTGGAAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTCAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATCGAGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGCAAAGATTTTGGAGGAGCTGAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATCCGAGGTATAGGGGGACAGACTGCTTTAAAGCTTATCCGTCAACATGGGTCTATAGAAAATATACTAGAGAACATCAATAAAGAAAGGTATCAAATTCCAGAGGGTTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTAATCTCATTTTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCCGTAACGAATCCTTCAGTATCCACTAAAAGAAAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAAGAAAGTAGGAAGAGTTGGTTCCATCGCCACTGTCGAATTTGTGCAACGAACTTGCTGATTTTAAGTAATTTATAAGCTTTAGGTGGCTGCAAATTTAGGAGATAGTTGCGACATTAATGTTCTTGAATGATTGGTCTTGGTGCAATTTTAGGAGGTATATCTTTGAGTACTTGCGGACATGCCTTTTGTGACTGCAATCTATTAGTTTTAAGTTGCAGGCCCTCTCAAGAATGATGATTTTGTTTCTGCTCTGCAACCTGTATATTTCTTAACTAAATGAATAGTGAAGTAAGATCTTATAGGTTTGCTTTTCCAATTCTTAGAACTCCTGGATTGATTGGAGAGGATAGTTGAGTTGCCAAATTTGAAAATTGAATTCATGAATCTCTCTATGTCGATTAGAAATTTAGTCTTGTATTCCAATTTGCATGGTTTTGCATGGAAGGAAGCTTGTTGATACATATATCTGAATCATATTTGTTGCATTTTATCAACTTGATCATGAATGTTGATCATGTACTCCAAGAATTCTCTGCTAGAAGTGTTACTGCATTGCAAATATCTGTGGTAGGAAATGAGGAGCTCATGAGTGTTAGTTTGGAGCATTAAAGAAAAGAGTAGCTACGAGGTGTGTAGCTATAACTTTTGATAGGGATGGGCACAAAACTTAGCAGCTAGCACATAATCTTGTAATCCTAAAATTGCACCAAGGCTTCGTGTGCCAATGGCAGAGTATTTCTTGATTATGGGTTTGCTATGGACTCCTCAAAAGGCCTCATGCCAATGG

Coding sequence (CDS)

ATGGGCATTAAGGGTTTAACCAAGCTTTTAGCTGACAATGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTTGGACGAAAAATTGCAATTGATGCCAGCATGAGTATCTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACTGAGATGTTGACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAGTTAAGCCAGTCTATGTGTTTGATGGAAAGCCTCCTGATTTGAAAAAGCAAGAACTTGCAAAACGTTATTCAAAGAGAGCAGATGCTACTGCAGACCTGGCAGATGCAATTGAGGTTGGAAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTCAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATCGAGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGCAAAGATTTTGGAGGAGCTGAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATCCGAGGTATAGGGGGACAGACTGCTTTAAAGCTTATCCGTCAACATGGGTCTATAGAAAATATACTAGAGAACATCAATAAAGAAAGGTATCAAATTCCAGAGGGTTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTAATCTCATTTTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCCGTAACGAATCCTTCAGTATCCACTAAAAGAAAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAAGAAAGTAG

Protein sequence

MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKETSEKPTKQAITKKSKSSGGKRK

Homology

[Close]

BLAST of Carg17003 vs. NCBI nr
Match: XP_023531872.1 (flap endonuclease 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 703.0 bits (1813), Expect = 5.4e-199
Identity = 364/382 (95.29%), Postives = 365/382 (95.55%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE                 VYAVASED
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIE+ILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW
Sbjct: 241 GIGGQTALKLIRQHGSIESILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
           TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE
Sbjct: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 366
           TSEKPTKQAITKKSKSSGGKRK
Sbjct: 361 TSEKPTKQAITKKSKSSGGKRK 382

[Close]

BLAST of Carg17003 vs. NCBI nr
Match: XP_022931726.1 (flap endonuclease 1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 701.8 bits (1810), Expect = 1.2e-198
Identity = 364/382 (95.29%), Postives = 364/382 (95.29%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE                 VYAVASED
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW
Sbjct: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
           TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE
Sbjct: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 366
           TSEKPTKQAITKKSKSSGGK K
Sbjct: 361 TSEKPTKQAITKKSKSSGGKIK 382

[Close]

BLAST of Carg17003 vs. NCBI nr
Match: XP_022969706.1 (flap endonuclease 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 698.7 bits (1802), Expect = 1.0e-197
Identity = 362/382 (94.76%), Postives = 363/382 (95.03%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE                 VYAVASED
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFGSPRFLRHLMDPSSRKIPVMEFEV+KILEELNLTMDQFVDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVSKILEELNLTMDQFVDLCILSGCDYCDSIR 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIENILENINKERYQIPE WPFQEARQLFKEPLVCTDEEQLDIKW
Sbjct: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEDWPFQEARQLFKEPLVCTDEEQLDIKW 300

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
           TTPDEEGLIS LVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE
Sbjct: 301 TTPDEEGLISLLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 366
           TSEKPTKQAITKKSKSSGGKRK
Sbjct: 361 TSEKPTKQAITKKSKSSGGKRK 382

[Close]

BLAST of Carg17003 vs. NCBI nr
Match: XP_022159615.1 (flap endonuclease 1 isoform X2 [Momordica charantia])

HSP 1 Score: 677.2 bits (1746), Expect = 3.2e-191
Identity = 346/382 (90.58%), Postives = 357/382 (93.46%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFESYFGR+IAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRRIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPPDLKKQELAKRYSKRADAT DLADA+E GN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAMEAGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           KEDIEKFSKRTVKVTKQHN+DCKRLLRLMGVPVIE                 VYAVASED
Sbjct: 121 KEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFGSP+FLRHLMDPSSRKIPVMEFEVAKILEELNL+MDQFVDLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGSPKFLRHLMDPSSRKIPVMEFEVAKILEELNLSMDQFVDLCILSGCDYCDSIR 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIE ILENINKERYQIP  WP+QEARQLFKEPLVCTDEEQLDIKW
Sbjct: 241 GIGGQTALKLIRQHGSIETILENINKERYQIPNDWPYQEARQLFKEPLVCTDEEQLDIKW 300

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
           TTPDEEGL++FLVNENGFNSDRVTKAVEKIKAAKNKSSQGR+ESFFKPVTNPSV  KRKE
Sbjct: 301 TTPDEEGLLTFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRLESFFKPVTNPSVPIKRKE 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 366
           TSEKPTKQA+TKKSKS GGKRK
Sbjct: 361 TSEKPTKQAVTKKSKSGGGKRK 382

[Close]

BLAST of Carg17003 vs. NCBI nr
Match: KGN66008.1 (hypothetical protein Csa_1G561390 [Cucumis sativus])

HSP 1 Score: 675.6 bits (1742), Expect = 9.2e-191
Identity = 346/382 (90.58%), Postives = 358/382 (93.72%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 41  MGIKGLTKLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 100

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPPDLKKQELAKRYSKRADAT DLADAIEVGN
Sbjct: 101 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 160

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           K+DIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE                 VYAVASED
Sbjct: 161 KDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 220

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF+DLCILSGCDYCD+IR
Sbjct: 221 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIR 280

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGG TALKLIRQHGSIE+ILENINKERYQIP+ WP++EARQLFKEPLVCTDEEQLDIKW
Sbjct: 281 GIGGLTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKW 340

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
           TTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVS KRKE
Sbjct: 341 TTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKE 400

Query: 361 TSEKPTKQAITKKSKSSGGKRK 366
           TSEKPTKQAITKKSK  G KRK
Sbjct: 401 TSEKPTKQAITKKSKFGGSKRK 422

[Close]

BLAST of Carg17003 vs. TAIR10
Match: AT5G26680.1 (5'-3' exonuclease family protein)

HSP 1 Score: 608.2 bits (1567), Expect = 3.3e-174
Identity = 305/359 (84.96%), Postives = 323/359 (89.97%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAP  MKEQKFESYFGRKIA+DASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPP+LK+QELAKRYSKRADATADL  AIE GN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           KEDIEK+SKRTVKVTKQHNDDCKRLLRLMGVPV+E                 VY VASED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+P+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQF+DLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIE ILEN+NKERYQIPE WP+ EAR+LFKEP V TDEEQLDIKW
Sbjct: 241 GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW 300

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRK 343
           T+PDEEG++ FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV N SV  KRK
Sbjct: 301 TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANSSVPAKRK 359

[Close]

BLAST of Carg17003 vs. TAIR10
Match: AT1G29630.2 (5'-3' exonuclease family protein)

HSP 1 Score: 79.0 bits (193), Expect = 6.9e-15
Identity = 75/297 (25.25%), Postives = 131/297 (44.11%), Query Frame = 0


Query: 1   MGIKGLTKLLAD-NAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAG 60
           MGI+GL  LL     P  +KE +     G  +A+D    +++  +   R   + L  +  
Sbjct: 1   MGIQGLLPLLKSIMVPIHIKELE-----GCIVAVDTYSWLHKGALSCSRELCKGLPTK-- 60

Query: 61  EVTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVG 120
               H+Q   +R   L   GVKP+ VFDG P  +K ++  KR   R +  A   +    G
Sbjct: 61  ---RHIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKENLARALEHEANG 120

Query: 121 NKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVI-----------------EVYAVASE 180
           N     +   + V ++     +  ++LR   V  +                 +V A+ +E
Sbjct: 121 NSSAAYECYSKAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITE 180

Query: 181 DMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----VDLCILSGCD 240
           D D + FG  R +   MD     +   EF+ +K+ +  +L++  F     +++CILSGCD
Sbjct: 181 DSDLIPFGCLRII-FKMDKFGHGV---EFQASKLPKNKDLSLSGFSSQMLLEMCILSGCD 240

Query: 241 YCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPEGW--PFQEARQLFKEPLV 273
           Y  S+ G+G + A  LI +  S + +++++      +P  +   F+ A   FK   V
Sbjct: 241 YLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRV 283

[Close]

BLAST of Carg17003 vs. TAIR10
Match: AT3G28030.1 (5'-3' exonuclease family protein)

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-09
Identity = 39/117 (33.33%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MG++GL +LL   AP G +    E+   +++AIDAS+ + QF+  +     +M+ N    
Sbjct: 1   MGVQGLWELL---APVG-RRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQN---- 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIE 118
             +HL G F R  +LL    KP++VFDG  P LK++ +  R  +R +A   +    E
Sbjct: 61  --AHLIGFFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAE 107

[Close]

BLAST of Carg17003 vs. TAIR10
Match: AT1G18090.1 (5'-3' exonuclease family protein)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-06
Identity = 84/379 (22.16%), Postives = 150/379 (39.58%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRS-GTEMLTNEAG 60
           MGIK L + +       +     + Y G+++ IDA    Y +L     S   E+  +  G
Sbjct: 1   MGIKDLLRFMKPY----ILPIHIQKYAGKRVGIDA----YSWLHKGAYSCSMELCLDTDG 60

Query: 61  EVTSHLQGMFNRTIRLLE-AGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEV 120
           +        F   + LL+   + PV V DG     K     +R+ KR          ++ 
Sbjct: 61  KKKLRYIDYFMHRVNLLQHYEIIPVVVLDGGNMPCKAATGDERHRKRKANFDAAMVKLKE 120

Query: 121 GNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVI---------------------EVY 180
           GN     +  +R V VT        ++L+   V  I                      + 
Sbjct: 121 GNVAAATELFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIA 180

Query: 181 AVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEE----LNLTMDQFVDLCIL 240
           AV +ED D L +G    +   MD   +   ++   V + +++     N   + F  +C+L
Sbjct: 181 AVITEDSDLLAYGCKAVI-FKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVL 240

Query: 241 SGCDYCDSIRGIGGQTALKLIRQHGSIENILENI-NKERYQIPEGW--PFQEARQLFKEP 300
           +GCD+  S+ G+G   A   I ++ S+E +L  +  K+   +P+ +   F EA  +F+  
Sbjct: 241 AGCDFLPSVPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSSFTEAVSVFQHA 300

Query: 301 LVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESF-- 344
            V  D +   +K   P    L++  V +  F    ++ +V  +  A+       M++F  
Sbjct: 301 RV-YDFDAKKLKHLKPLSHNLLNLPVEQLEFLGPDLSPSV-AVAIAEGNVDPITMKAFNH 360

[Close]

BLAST of Carg17003 vs. TAIR10
Match: AT3G52050.3 (5'-3' exonuclease family protein)

HSP 1 Score: 43.9 bits (102), Expect = 2.5e-04
Identity = 35/132 (26.52%), Postives = 61/132 (46.21%), Query Frame = 0


Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEVYAVASEDMDSLTFGSPRFLRHLMD 180
           K  I+  S + ++V     DD    L +  +       V S D D     SP     L+ 
Sbjct: 231 KASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSL--RLLR 290

Query: 181 PSSRKIPVMEFEVAKILEEL-NLTMDQFVDLCILSG--CDYCDSIRGIGGQTALKLIRQH 240
            + R   +  F +    ++  NL   QFVD+  L+G   D    + GIG   A++LI + 
Sbjct: 291 LTPRGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRF 350

Query: 241 GSIENILENINK 250
           G++EN+L+++++
Sbjct: 351 GTLENLLQSVDE 360

[Close]

BLAST of Carg17003 vs. Swiss-Prot
Match: sp|O65251|FEN1_ARATH (Flap endonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=FEN1 PE=3 SV=2)

HSP 1 Score: 622.9 bits (1605), Expect = 2.3e-177
Identity = 316/382 (82.72%), Postives = 338/382 (88.48%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAP  MKEQKFESYFGRKIA+DASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPP+LK+QELAKRYSKRADATADL  AIE GN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           KEDIEK+SKRTVKVTKQHNDDCKRLLRLMGVPV+E                 VY VASED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+P+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQF+DLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIE ILEN+NKERYQIPE WP+ EAR+LFKEP V TDEEQLDIKW
Sbjct: 241 GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW 300

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
           T+PDEEG++ FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV N SV  KRKE
Sbjct: 301 TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANSSVPAKRKE 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 366
             E  TK A  KK+K +GG++K
Sbjct: 361 IPESTTKGAANKKTKGAGGRKK 382

[Close]

BLAST of Carg17003 vs. Swiss-Prot
Match: sp|C6TEX6|FEN1_SOYBN (Flap endonuclease 1 OS=Glycine max OX=3847 GN=FEN1 PE=2 SV=1)

HSP 1 Score: 615.5 bits (1586), Expect = 3.7e-175
Identity = 312/382 (81.68%), Postives = 339/382 (88.74%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKE KFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMF+RTIRLLEAG+KPVYVFDGKPPDLKKQELAKRYSKRA+AT DL++A+E  N
Sbjct: 61  VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETAN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPV+E                 VY V SED
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYGVVSED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+P+FLRHLMDPSS+KIPVMEFEVAKILEELN+TMDQF+DLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDYCDSIR 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGG TALKLIRQHGSIENI EN+NKERYQIP+ WP+QEAR+LFKEPLV TDE++LDIKW
Sbjct: 241 GIGGLTALKLIRQHGSIENIPENLNKERYQIPDNWPYQEARRLFKEPLVITDEKELDIKW 300

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
           ++PDEEGLI+FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKP  NPSV  KRKE
Sbjct: 301 SSPDEEGLITFLVNENGFNRDRVTKAIEKIKVAKNKSSQGRLESFFKPTANPSVPIKRKE 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 366
           T     K+   KK+K+ GGK+K
Sbjct: 361 TPVNNAKET-NKKTKAGGGKKK 381

[Close]

BLAST of Carg17003 vs. Swiss-Prot
Match: sp|B8AW67|FEN11_ORYSI (Flap endonuclease 1-A OS=Oryza sativa subsp. indica OX=39946 GN=FEN1a PE=3 SV=1)

HSP 1 Score: 596.3 bits (1536), Expect = 2.3e-169
Identity = 303/382 (79.32%), Postives = 333/382 (87.17%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKEQKFESYFGR+IA+DASMSIYQFLIVVGR+G E LTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPPDLKKQELAKRYSKR DAT +L +A+E G+
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           K+ IEKFSKRTVKVTKQHN++CKRLLRLMGVPV+E                 VYAVASED
Sbjct: 121 KDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+PRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQF+DLCILSGCDYCDSI+
Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIK 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIE+ILENINK+RYQIPE WP+QEAR+LFKEP V  D  +L  KW
Sbjct: 241 GIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL--KW 300

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
             PDEEGL+ FLV ENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV + SV  KRK+
Sbjct: 301 NAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPLKRKD 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 366
           TSEKPTK    KK+K +GGK+K
Sbjct: 361 TSEKPTKAVANKKTKGAGGKKK 380

[Close]

BLAST of Carg17003 vs. Swiss-Prot
Match: sp|Q9SXQ6|FEN11_ORYSJ (Flap endonuclease 1-A OS=Oryza sativa subsp. japonica OX=39947 GN=FEN1A PE=1 SV=1)

HSP 1 Score: 596.3 bits (1536), Expect = 2.3e-169
Identity = 303/382 (79.32%), Postives = 333/382 (87.17%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKEQKFESYFGR+IA+DASMSIYQFLIVVGR+G E LTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPPDLKKQELAKRYSKR DAT +L +A+E G+
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           K+ IEKFSKRTVKVTKQHN++CKRLLRLMGVPV+E                 VYAVASED
Sbjct: 121 KDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+PRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQF+DLCILSGCDYCDSI+
Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIK 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIE+ILENINK+RYQIPE WP+QEAR+LFKEP V  D  +L  KW
Sbjct: 241 GIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL--KW 300

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
             PDEEGL+ FLV ENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV + SV  KRK+
Sbjct: 301 NAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPLKRKD 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 366
           TSEKPTK    KK+K +GGK+K
Sbjct: 361 TSEKPTKAVANKKTKGAGGKKK 380

[Close]

BLAST of Carg17003 vs. Swiss-Prot
Match: sp|B4FHY0|FEN1_MAIZE (Flap endonuclease 1 OS=Zea mays OX=4577 GN=FEN1 PE=2 SV=1)

HSP 1 Score: 585.9 bits (1509), Expect = 3.1e-166
Identity = 299/382 (78.27%), Postives = 332/382 (86.91%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKEQKFESYFGRKIA+DASMSIYQFLIVVGR+G E LTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPPD+KKQELAKRYSKR DAT DL +A+EVG+
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRDDATKDLTEAVEVGD 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           K+ IEK SKRTVKVT+QHN+DCKRLLRLMGVPV+E                 V+AVASED
Sbjct: 121 KDAIEKLSKRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALCINDKVFAVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+PRFLRHLMDPSS+KIPVMEF+VAK+LEEL LTMDQF+DLCIL GCDYCDSI+
Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIK 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIE+ILEN+NK+RYQIPE WP+QEAR+LFKEP V  D  +L  KW
Sbjct: 241 GIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL--KW 300

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
           T PDEEGLISFLV +NGFN DRVTKA+EKIK+AKNKSSQGR+ESFFKP    S   KRKE
Sbjct: 301 TAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFFKPTATTSAPLKRKE 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 366
           TS+K +K A  KK+K +GGK+K
Sbjct: 361 TSDKTSKAAANKKTK-AGGKKK 379

[Close]

BLAST of Carg17003 vs. TrEMBL
Match: tr|A0A0A0LWA2|A0A0A0LWA2_CUCSA (Flap endonuclease 1 OS=Cucumis sativus OX=3659 GN=FEN1 PE=3 SV=1)

HSP 1 Score: 675.6 bits (1742), Expect = 6.1e-191
Identity = 346/382 (90.58%), Postives = 358/382 (93.72%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 41  MGIKGLTKLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 100

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPPDLKKQELAKRYSKRADAT DLADAIEVGN
Sbjct: 101 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 160

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           K+DIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE                 VYAVASED
Sbjct: 161 KDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 220

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF+DLCILSGCDYCD+IR
Sbjct: 221 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIR 280

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGG TALKLIRQHGSIE+ILENINKERYQIP+ WP++EARQLFKEPLVCTDEEQLDIKW
Sbjct: 281 GIGGLTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKW 340

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
           TTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVS KRKE
Sbjct: 341 TTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKE 400

Query: 361 TSEKPTKQAITKKSKSSGGKRK 366
           TSEKPTKQAITKKSK  G KRK
Sbjct: 401 TSEKPTKQAITKKSKFGGSKRK 422

[Close]

BLAST of Carg17003 vs. TrEMBL
Match: tr|A0A1S3BQC8|A0A1S3BQC8_CUCME (Flap endonuclease 1 OS=Cucumis melo OX=3656 GN=LOC103492083 PE=3 SV=1)

HSP 1 Score: 674.9 bits (1740), Expect = 1.0e-190
Identity = 346/383 (90.34%), Postives = 357/383 (93.21%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPPDLKKQELAKRYSKRADAT DLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE------------------VYAVASE 180
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE                  VYAVASE
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEQAPSEAEAQCAALCKLGKVYAVASE 180

Query: 181 DMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSI 240
           DMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF+DLCILSGCDYCD+I
Sbjct: 181 DMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNI 240

Query: 241 RGIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIK 300
           RGIGG TALKLIRQHG+IE ILENINKERYQIP+ WP++EARQLFKEPLVCTDEEQLDIK
Sbjct: 241 RGIGGLTALKLIRQHGAIEGILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIK 300

Query: 301 WTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRK 360
           WTTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVS KRK
Sbjct: 301 WTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRK 360

Query: 361 ETSEKPTKQAITKKSKSSGGKRK 366
           ETSEKPTKQAI KKSKS G KRK
Sbjct: 361 ETSEKPTKQAIMKKSKSGGSKRK 383

[Close]

BLAST of Carg17003 vs. TrEMBL
Match: tr|A0A1S3BQ01|A0A1S3BQ01_CUCME (Flap endonuclease 1 OS=Cucumis melo OX=3656 GN=LOC103492083 PE=3 SV=1)

HSP 1 Score: 644.8 bits (1662), Expect = 1.2e-181
Identity = 326/359 (90.81%), Postives = 337/359 (93.87%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPPDLKKQELAKRYSKRADAT DLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE                 VYAVASED
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF+DLCILSGCDYCD+IR
Sbjct: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIR 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGG TALKLIRQHG+IE ILENINKERYQIP+ WP++EARQLFKEPLVCTDEEQLDIKW
Sbjct: 241 GIGGLTALKLIRQHGAIEGILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKW 300

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRK 343
           TTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVS KRK
Sbjct: 301 TTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRK 359

[Close]

BLAST of Carg17003 vs. TrEMBL
Match: tr|A0A1S3BPA7|A0A1S3BPA7_CUCME (Flap endonuclease 1 OS=Cucumis melo OX=3656 GN=LOC103492083 PE=3 SV=1)

HSP 1 Score: 644.4 bits (1661), Expect = 1.5e-181
Identity = 326/360 (90.56%), Postives = 337/360 (93.61%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPPDLKKQELAKRYSKRADAT DLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE------------------VYAVASE 180
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE                  VYAVASE
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEQAPSEAEAQCAALCKLGKVYAVASE 180

Query: 181 DMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSI 240
           DMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF+DLCILSGCDYCD+I
Sbjct: 181 DMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNI 240

Query: 241 RGIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIK 300
           RGIGG TALKLIRQHG+IE ILENINKERYQIP+ WP++EARQLFKEPLVCTDEEQLDIK
Sbjct: 241 RGIGGLTALKLIRQHGAIEGILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIK 300

Query: 301 WTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRK 343
           WTTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVS KRK
Sbjct: 301 WTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRK 360

[Close]

BLAST of Carg17003 vs. TrEMBL
Match: tr|A0A251NXV1|A0A251NXV1_PRUPE (Flap endonuclease 1 OS=Prunus persica OX=3760 GN=FEN1 PE=3 SV=1)

HSP 1 Score: 638.3 bits (1645), Expect = 1.1e-179
Identity = 324/382 (84.82%), Postives = 344/382 (90.05%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 55  MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 114

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMF+RTIRLLEAG+KP+YVFDGKPPDLKKQELAKRYSKRADAT DLA A+EVGN
Sbjct: 115 VTSHLQGMFSRTIRLLEAGIKPLYVFDGKPPDLKKQELAKRYSKRADATEDLAAAVEVGN 174

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-----------------VYAVASED 180
           KEDIEK+SKRTVKVTKQHNDDCKRLLRLMGVPVIE                 VYAVASED
Sbjct: 175 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASED 234

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+PRFLRHLMDPSSRKIPVMEFEVAK+LEELNLTMDQF+DLCILSGCDYCDSIR
Sbjct: 235 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKVLEELNLTMDQFIDLCILSGCDYCDSIR 294

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIENILENINKERYQIPE WP+QEAR+LFKEP+  +DEEQL+IKW
Sbjct: 295 GIGGQTALKLIRQHGSIENILENINKERYQIPEDWPYQEARRLFKEPVALSDEEQLEIKW 354

Query: 301 TTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
             PDEEGLISFLVNENGFNSDRVTKA+EKIKAAKNKSSQGR+ESFFKP  NPSV  KRKE
Sbjct: 355 IAPDEEGLISFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKE 414

Query: 361 TSEKPTKQAITKKSKSSGGKRK 366
           T +   K+   KK K+ GG++K
Sbjct: 415 TPQNTAKEPANKKPKAGGGRKK 436

The following BLAST results are available for this feature:

BLAST of Carg17003 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531872.1	5.4e-199	95.29	flap endonuclease 1 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022931726.1	1.2e-198	95.29	flap endonuclease 1 isoform X2 [Cucurbita moschata]	[more]
XP_022969706.1	1.0e-197	94.76	flap endonuclease 1 isoform X2 [Cucurbita maxima]	[more]
XP_022159615.1	3.2e-191	90.58	flap endonuclease 1 isoform X2 [Momordica charantia]	[more]
KGN66008.1	9.2e-191	90.58	hypothetical protein Csa_1G561390 [Cucumis sativus]	[more]

BLAST of Carg17003 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26680.1	3.3e-174	84.96	5'-3' exonuclease family protein	[more]
AT1G29630.2	6.9e-15	25.25	5'-3' exonuclease family protein	[more]
AT3G28030.1	3.3e-09	33.33	5'-3' exonuclease family protein	[more]
AT1G18090.1	1.2e-06	22.16	5'-3' exonuclease family protein	[more]
AT3G52050.3	2.5e-04	26.52	5'-3' exonuclease family protein	[more]

BLAST of Carg17003 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O65251\|FEN1_ARATH	2.3e-177	82.72	Flap endonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=FEN1 PE=3 SV=2	[more]
sp\|C6TEX6\|FEN1_SOYBN	3.7e-175	81.68	Flap endonuclease 1 OS=Glycine max OX=3847 GN=FEN1 PE=2 SV=1	[more]
sp\|B8AW67\|FEN11_ORYSI	2.3e-169	79.32	Flap endonuclease 1-A OS=Oryza sativa subsp. indica OX=39946 GN=FEN1a PE=3 SV=1	[more]
sp\|Q9SXQ6\|FEN11_ORYSJ	2.3e-169	79.32	Flap endonuclease 1-A OS=Oryza sativa subsp. japonica OX=39947 GN=FEN1A PE=1 SV=...	[more]
sp\|B4FHY0\|FEN1_MAIZE	3.1e-166	78.27	Flap endonuclease 1 OS=Zea mays OX=4577 GN=FEN1 PE=2 SV=1	[more]

BLAST of Carg17003 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWA2\|A0A0A0LWA2_CUCSA	6.1e-191	90.58	Flap endonuclease 1 OS=Cucumis sativus OX=3659 GN=FEN1 PE=3 SV=1	[more]
tr\|A0A1S3BQC8\|A0A1S3BQC8_CUCME	1.0e-190	90.34	Flap endonuclease 1 OS=Cucumis melo OX=3656 GN=LOC103492083 PE=3 SV=1	[more]
tr\|A0A1S3BQ01\|A0A1S3BQ01_CUCME	1.2e-181	90.81	Flap endonuclease 1 OS=Cucumis melo OX=3656 GN=LOC103492083 PE=3 SV=1	[more]
tr\|A0A1S3BPA7\|A0A1S3BPA7_CUCME	1.5e-181	90.56	Flap endonuclease 1 OS=Cucumis melo OX=3656 GN=LOC103492083 PE=3 SV=1	[more]
tr\|A0A251NXV1\|A0A251NXV1_PRUPE	1.1e-179	84.82	Flap endonuclease 1 OS=Prunus persica OX=3760 GN=FEN1 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016788	hydrolase activity, acting on ester bonds
GO:0003824	catalytic activity
GO:0003677	DNA binding
GO:0004518	nuclease activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

Vocabulary: **INTERPRO**
Term	Definition
IPR036279	5-3_exonuclease_C_sf
IPR029060	PIN-like_dom_sf
IPR023426	Flap_endonuc
IPR019974	XPG_CS
IPR006086	XPG-I_dom
IPR002421	5-3_exonuclease_N
IPR008918	HhH2
IPR006085	XPG_DNA_repair_N
IPR006084	XPG/Rad2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17003-RA	Carg17003-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006084	XPG/Rad2 endonuclease	PRINTS	PR00853	XPGRADSUPER	coord: 82..101 score: 57.5 coord: 28..42 score: 49.38 coord: 207..222 score: 52.93 coord: 150..170 score: 37.8
IPR006084	XPG/Rad2 endonuclease	PANTHER	PTHR11081	XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY	coord: 1..344
IPR006085	XPG N-terminal	SMART	SM00485	xpgn3	coord: 1..108 e-value: 1.3E-55 score: 200.7
IPR006085	XPG N-terminal	PFAM	PF00752	XPG_N	coord: 1..107 e-value: 3.0E-30 score: 104.6
IPR008918	Helix-hairpin-helix motif, class 2	SMART	SM00279	HhH_4	coord: 204..237 e-value: 5.0E-14 score: 62.6
IPR002421	5'-3' exonuclease, N-terminal	SMART	SM00475	53exo3	coord: 29..282 e-value: 0.001 score: -75.6
IPR006086	XPG-I domain	SMART	SM00484	xpgineu	coord: 147..202 e-value: 1.2E-11 score: 54.7
IPR006086	XPG-I domain	PFAM	PF00867	XPG_I	coord: 156..217 e-value: 1.3E-15 score: 57.4
None	No IPR available	GENE3D	G3DSA:3.40.50.1010		coord: 2..343 e-value: 3.0E-126 score: 423.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 317..365
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 320..339
None	No IPR available	PANTHER	PTHR11081:SF30	SUBFAMILY NOT NAMED	coord: 1..344
None	No IPR available	CDD	cd09907	H3TH_FEN1-Euk	coord: 205..272 e-value: 5.29815E-41 score: 139.219
IPR019974	XPG conserved site	PROSITE	PS00841	XPG_1	coord: 80..94
IPR023426	Flap endonuclease 1	HAMAP	MF_00614	Fen	coord: 1..330 score: 126.355
IPR023426	Flap endonuclease 1	CDD	cd09867	PIN_FEN1	coord: 4..329 e-value: 7.5437E-125 score: 362.207
IPR029060	PIN-like domain superfamily	SUPERFAMILY	SSF88723	PIN domain-like	coord: 2..217
IPR036279	5'-3' exonuclease, C-terminal domain superfamily	SUPERFAMILY	SSF47807	5' to 3' exonuclease, C-terminal subdomain	coord: 202..336

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17003	CmaCh11G011830	Cucurbita maxima (Rimu)	carcmaB0651
Carg17003	CmoCh11G012560	Cucurbita moschata (Rifu)	carcmoB0632
Carg17003	Cp4.1LG04g00130	Cucurbita pepo (Zucchini)	carcpeB0657

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17003	Wild cucumber (PI 183967)	carcpiB0504
Carg17003	Cucumber (Chinese Long) v3	carcucB0501
Carg17003	Melon (DHL92) v3.5.1	carmeB0473
Carg17003	Melon (DHL92) v3.6.1	carmedB0477