Carg16999 (gene) Silver-seed gourd

Overview
NameCarg16999
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_061 : 962991 .. 964558 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAACTCATCACCACCGTCTTTCTCTTCAACAACCTCCTCAAATTTGTACCCCAAATGTGGCTTTGCCAGCCAGACCTTGTTGCTATTCTCCTCTGCCTCAGATGGCTGTGGGAATCTCGTCTCTTGAACTTCTTTTGTTACCCAATTTGCCTGTTCTAAAAGACCCTTTCAGGCTTTGAGTTTCTTTAACCATATGAGGCGTCTCTGCTGTTTTATTTGCTTGTTGATTCTTTGGCTTGTGTTCATGGAGATCAGATGCATTTTCTAATTTGGAAACATGGATTCCATGCTGAAGTCTTTGTTGCCAGTGCATTGGTCGATATGTATGCGAAATGTTGCGATATGTGCACTGCTGAGAAGGTGTTTGAGGAAATGCCTGTGGGAAACCTTGTGTCTTGCAATCCACGATTGTGGGGTTCTTGCAGAACAAAGTTTATGGCTCTTGCAGATCAAAGTTTATGATCGGGCCATTTTCTCTAACTGTTCTTGATGAGGTAAGCTTTTCGAGTGCTTTAGTGTTTAGCACCATGTTGGTAACTTGGAGTTTGGGAAACAAGTTCATGGGTTTCTCTGAAGCTTGGTGTCGAGAATTTGGTTCATGTTAATAACTCGCTGATTGACATGTATGGTAAATGTGGCTTGTTTTATGATGTTGTGAAGTTGTTCTCAAATATTGGGGTTTAGAGATGTTGCGGCTAGGAATATAATGATCATGGCATGAGTTTATAGCGACAATTATAAAGGTGCCTACAATAGTTTTTGGAAGATGAGGAGGAAAGGTTTAATACCTGATGATGCATCATACTCTTCTGCGCTTCATTCTTGAGAAAATCTTGCCATTATATCAGGGAACGCTTATCCATTATCAGATCGTACAATCTGGGTTTGTGAACATGTTGTGTGTTACAAGTTCTTTGGTCACAATGTATGCAAAATGCAGCAGCTTGGCAGATGTTTTTTTTGGATATTTGAAGAAACTTTTTTTTGGATATTTGAAGAAACTAAGGACGATAATGTGTTTTGTTGGACAGCCATAATTGCAACTTGTCAACAGCACGGCCATGCTAACCAGGTTGTTGAATCGTTGAAAGAAATGTTGAGAGAGGAGATTACACCTGACTACATTACTTTTATTTCTGTTCTCTCTGCTTGTAGCCACACTGGTCGGGTTGAAGAAGGATTCTTCTACTTTAATTCAATGGTTTAAGTTCATGGTAGTAACCCTGAGTATGAACATTATGCGTGCATAGTTGACTTGCTTGGTCGTGCTGAGCAGTTGAATAGAGCTAAGAGGTTTATAGAACTGATGCCTATCAAACCAGAGGCAGAGTTGCTTGATCTTTATTATGTTGCATATGAGGTTAGCAACTTTAGTTATATCTTTGACATTTCTTAAAAGCATATGAGATTAGCAACTTTAGTTATATCTTTGACATTTCTTAAATCCTGAATTGCACGGTATCTTGCCTTTTTCATGTTGTGCCAAAGGCCATTGCTTTTGTTGTCTGTAAAATGAAGTTCCCTTGTAGTTGTACTAAATTGAGCAGCCTGATGAGGAAATAA

mRNA sequence

ATGCCCAACTCATCACCACCGTCTTTCTCTTCAACAACCTCCTCAAATTTGTACCCCAAATGTGGCTTTGCCAGCCAGACCTTGTTGCTATTCTCCTCTGCCTCAGATGGCTGTGGGAATCTCGCGTCTCTGCTGTTTTATTTGCTTGTTGATTCTTTGGCTTGTGTTCATGGAGATCAGATGCATTTTCTAATTTGGAAACATGGATTCCATGCTGAAGTCTTTGTTGCCAGTGCATTGGTCGATATGTATGCGAAATGTTGCGATATGTGCACTGCTGAGAAGAACAAAGTTTATGGCTCTTGCAGATCAAAGTTTATGATCGGGCCATTTTCTCTAACTGTTCTTGATGAGCTTGGTGTCGAGAATTTGGTTCATGTTAATAACTCGCTGATTGACATGTATGCCATAATTGCAACTTGTCAACAGCACGGCCATGCTAACCAGGTTGTTGAATCGTTGAAAGAAATGTTGAGAGAGGAGATTACACCTGACTACATTACTTTTATTTCTGTTCTCTCTGCTTGTAGCCACACTGGTCGGGTTGAAGAAGGATTCTTCTACTTTAATTCAATGTTGAATAGAGCTAAGAGGTTTATAGAACTGATGCCTATCAAACCAGAGGCAGAGTTGCTTGATCTTTATTATGTTGCATATGAGGCCATTGCTTTTGTTGTCTGTAAAATGAAGTTCCCTTGTAGTTGTACTAAATTGAGCAGCCTGATGAGGAAATAA

Coding sequence (CDS)

ATGCCCAACTCATCACCACCGTCTTTCTCTTCAACAACCTCCTCAAATTTGTACCCCAAATGTGGCTTTGCCAGCCAGACCTTGTTGCTATTCTCCTCTGCCTCAGATGGCTGTGGGAATCTCGCGTCTCTGCTGTTTTATTTGCTTGTTGATTCTTTGGCTTGTGTTCATGGAGATCAGATGCATTTTCTAATTTGGAAACATGGATTCCATGCTGAAGTCTTTGTTGCCAGTGCATTGGTCGATATGTATGCGAAATGTTGCGATATGTGCACTGCTGAGAAGAACAAAGTTTATGGCTCTTGCAGATCAAAGTTTATGATCGGGCCATTTTCTCTAACTGTTCTTGATGAGCTTGGTGTCGAGAATTTGGTTCATGTTAATAACTCGCTGATTGACATGTATGCCATAATTGCAACTTGTCAACAGCACGGCCATGCTAACCAGGTTGTTGAATCGTTGAAAGAAATGTTGAGAGAGGAGATTACACCTGACTACATTACTTTTATTTCTGTTCTCTCTGCTTGTAGCCACACTGGTCGGGTTGAAGAAGGATTCTTCTACTTTAATTCAATGTTGAATAGAGCTAAGAGGTTTATAGAACTGATGCCTATCAAACCAGAGGCAGAGTTGCTTGATCTTTATTATGTTGCATATGAGGCCATTGCTTTTGTTGTCTGTAAAATGAAGTTCCCTTGTAGTTGTACTAAATTGAGCAGCCTGATGAGGAAATAA

Protein sequence

MPNSSPPSFSSTTSSNLYPKCGFASQTLLLFSSASDGCGNLASLLFYLLVDSLACVHGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDELGVENLVHVNNSLIDMYAIIATCQQHGHANQVVESLKEMLREEITPDYITFISVLSACSHTGRVEEGFFYFNSMLNRAKRFIELMPIKPEAELLDLYYVAYEAIAFVVCKMKFPCSCTKLSSLMRK
Homology
[Close]
BLAST of Carg16999 vs. NCBI nr
Match: XP_023530039.1 (putative pentatricopeptide repeat-containing protein At3g15130 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.9 bits (603), Expect = 7.3e-59
Identity = 138/229 (60.26%), Postives = 142/229 (62.01%), Query Frame = 0 

Query: 53  LACVHGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFS 112
           +ACVHGDQMHFLIWKHGFHAEVFVASALVD+                    +KFMIGPFS
Sbjct: 1   MACVHGDQMHFLIWKHGFHAEVFVASALVDI--------------------TKFMIGPFS 60

Query: 113 LTVLDELGVENLVHVNNSLIDMYA----------------------IIATCQ-------- 172
           LTVLDE GVENLVHVNNSLIDMY                        I  C+        
Sbjct: 61  LTVLDEPGVENLVHVNNSLIDMYGKCGLFYDVVKLFSRNAYPLSDHTIWVCEHVVCYKFF 120

Query: 173 --QHGHANQVVESLKEMLREEITPDYITFISVLSACSHTGRVEEGFFYFNSM-------- 225
              HGHANQVVE LKEMLREEITPDYITFISVLSACSHTGRVEEGFFYFNSM        
Sbjct: 121 GHNHGHANQVVELLKEMLREEITPDYITFISVLSACSHTGRVEEGFFYFNSMVEVHGSNP 180

[Close]
BLAST of Carg16999 vs. NCBI nr
Match: XP_008450508.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 140/435 (32.18%), Postives = 158/435 (36.32%), Query Frame = 0 

Query: 16  NLYPKCGFASQTLLLFSSASDGCGNLAS-----------------LLFY----------- 75
           NLY KCG   QTLLLFSSA D   ++ S                 L F+           
Sbjct: 70  NLYAKCGCVDQTLLLFSSAPDVSKDVVSWTSLITQLTRSKRPFKALTFFNQMRLSGVYPN 129

Query: 76  ---------LLVDSLACVHGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEK--- 135
                       D++  VHG+QMH L+WKHGFHAEVFV SALVDMYAKCCDM  AEK   
Sbjct: 130 HYTLSAVLSACTDTMVSVHGEQMHSLVWKHGFHAEVFVVSALVDMYAKCCDMRMAEKVFE 189

Query: 136 -------------------NKVYGSCRSKF-MIGPFSLTVLDE----------------- 195
                              NK+Y      F  +   +LT LDE                 
Sbjct: 190 EMPVRNLVSWNSMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLA 249

Query: 196 -----------LGVENLVHVNNSLIDMY-------------------------------- 212
                      LGV NLV++NNSLIDMY                                
Sbjct: 250 FGKQVHGVALKLGVRNLVYINNSLIDMYSKCGLFNEVAKLFSNIGARDVVTWNIMIMACV 309

[Close]
BLAST of Carg16999 vs. NCBI nr
Match: XP_023538639.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023538645.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 141/435 (32.41%), Postives = 158/435 (36.32%), Query Frame = 0 

Query: 16  NLYPKCGFASQTLLLFSSASDGCGNLAS-----------------LLFY----------- 75
           NLY K G   QTLL FSS      N+ S                 L F+           
Sbjct: 49  NLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHALAFFNHMRCSGVYPN 108

Query: 76  ---------LLVDSLACVHGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEK--- 135
                       D++A VHGDQMH LIWKHGFHA+VFVASAL+DMYAKCCDMC AEK   
Sbjct: 109 HYTFSAVLSACTDTMASVHGDQMHSLIWKHGFHADVFVASALLDMYAKCCDMCRAEKVFE 168

Query: 136 -------------------NKVYGSCRSKF-MIGPFSLTVLDE----------------- 195
                              NK+Y      F  +   SLT +DE                 
Sbjct: 169 EMPLRNLVSWNSMIVGFLQNKLYDRAILFFKTLLLESLTAVDEVSFSSALSACANVGNWE 228

Query: 196 -----------LGVENLVHVNNSLIDMY-------------------------------- 212
                      LGV NLV+VNNSLIDMY                                
Sbjct: 229 FGKQVHGVALKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACV 288

[Close]
BLAST of Carg16999 vs. NCBI nr
Match: XP_022968835.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022968836.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 163.7 bits (413), Expect = 7.9e-37
Identity = 141/435 (32.41%), Postives = 158/435 (36.32%), Query Frame = 0 

Query: 16  NLYPKCGFASQTLLLFSSASDGCGNLAS-----------------LLFY----------- 75
           NLY K G    TLLLFSS      N+ S                 L F+           
Sbjct: 49  NLYAKSGSFDHTLLLFSSTPHDSKNVVSWTSLITQFSRSKRPFHALTFFNRMRCSGVFPN 108

Query: 76  ---------LLVDSLACVHGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEK--- 135
                       D++A VHGDQMH LIWKHGFHA+VFVASALVDMYAKCCDMC AEK   
Sbjct: 109 HYTFSAVLSASTDTMASVHGDQMHSLIWKHGFHADVFVASALVDMYAKCCDMCRAEKVFE 168

Query: 136 -------------------NKVYGSCRSKF-MIGPFSLTVLDE----------------- 195
                              NK+Y      F  +   +LT +DE                 
Sbjct: 169 EMPLRNLVSWNSMIVGFLQNKLYDRAILFFKTLLLENLTAVDEVSFSSALSACANVGNWE 228

Query: 196 -----------LGVENLVHVNNSLIDMY-------------------------------- 212
                      LGV NLV+VNNSLIDMY                                
Sbjct: 229 FGKQVHGVALKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACV 288

[Close]
BLAST of Carg16999 vs. NCBI nr
Match: XP_022961446.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 162.2 bits (409), Expect = 2.3e-36
Identity = 141/435 (32.41%), Postives = 157/435 (36.09%), Query Frame = 0 

Query: 16  NLYPKCGFASQTLLLFSSASDGCGNLAS-----------------LLFY----------- 75
           NLY K      TLLLFSSA     N+ S                 L F+           
Sbjct: 49  NLYAKSASLDHTLLLFSSAPHDSKNVVSWTSLITQFSRSKRPFHALTFFNHMRCSGVYPN 108

Query: 76  ---------LLVDSLACVHGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEK--- 135
                       D++A VHGDQMH LIWKHGFHA+VFVASAL+DMYAKCCDMC AEK   
Sbjct: 109 HYTFSAVLSACTDTMASVHGDQMHSLIWKHGFHADVFVASALLDMYAKCCDMCRAEKVFE 168

Query: 136 -------------------NKVYGSCRSKF-MIGPFSLTVLDE----------------- 195
                              NK+Y      F  +   SLT +DE                 
Sbjct: 169 EMPLRNLVSWNSMIVGFLQNKLYDRAILFFKTLLLESLTAVDEVSFSSALSACANVGNWE 228

Query: 196 -----------LGVENLVHVNNSLIDMY-------------------------------- 212
                      LGV NLV+VNNSLIDMY                                
Sbjct: 229 FGKQVHGVALKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACV 288

[Close]
BLAST of Carg16999 vs. TAIR10
Match: AT4G13650.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-18
Identity = 58/177 (32.77%), Postives = 86/177 (48.59%), Query Frame = 0 

Query: 58  GDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLD 117
           G Q+H +I K G+ +E  V +AL+ MYAKC  +  AEK         +F+          
Sbjct: 711 GKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEK---------QFL---------- 770

Query: 118 ELGVENLVHVNNSLIDMYAIIATCQQHGHANQVVESLKEMLREEITPDYITFISVLSACS 177
           E+  +N V  N       AII    +HG  ++ ++S  +M+   + P+++T + VLSACS
Sbjct: 771 EVSTKNEVSWN-------AIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 830

Query: 178 HTGRVEEGFFYFNSM-------------------------LNRAKRFIELMPIKPEA 210
           H G V++G  YF SM                         L+RAK FI+ MPIKP+A
Sbjct: 831 HIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA 861

[Close]
BLAST of Carg16999 vs. TAIR10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-17
Identity = 55/162 (33.95%), Postives = 82/162 (50.62%), Query Frame = 0 

Query: 31  FSSASDGCGNLASLLFYLLVDSLACVHGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDM 90
           FSS    C +LA+L             G Q+H  + + GF + +F+ASALVDMY+KC ++
Sbjct: 346 FSSVIPACAHLATLHL-----------GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNI 405

Query: 91  CTAEKNKVYGSCRSKFMIGPFSLTVLDELGVENLVHVNNSLIDMYAIIATCQQHGHANQV 150
             A   K++             + VLDE             +   AII     HGH ++ 
Sbjct: 406 KAA--RKIFD-----------RMNVLDE-------------VSWTAIIMGHALHGHGHEA 465

Query: 151 VESLKEMLREEITPDYITFISVLSACSHTGRVEEGFFYFNSM 193
           V   +EM R+ + P+ + F++VL+ACSH G V+E + YFNSM
Sbjct: 466 VSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSM 470

[Close]
BLAST of Carg16999 vs. TAIR10
Match: AT5G04780.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 7.9e-15
Identity = 57/167 (34.13%), Postives = 82/167 (49.10%), Query Frame = 0 

Query: 26  QTLLLFSSASDGCGNLASLLFYLLVDSLACVHGDQMHFLIWKHGFHAEVFVASALVDMYA 85
           Q     SS    C NLA+L           + G QMH +I K GF + VFVAS+ VDMYA
Sbjct: 261 QNQFTLSSVICACSNLAAL-----------IEGKQMHAVICKSGFGSNVFVASSAVDMYA 320

Query: 86  KCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDELGVENLVHVNNSLIDMYAIIATCQQHG 145
           KC            GS R  ++I         E+  +NL  + N++I  +A      +H 
Sbjct: 321 KC------------GSLRESYII-------FSEVQEKNL-ELWNTIISGFA------KHA 380

Query: 146 HANQVVESLKEMLREEITPDYITFISVLSACSHTGRVEEGFFYFNSM 193
              +V+   ++M ++ + P+ +TF S+LS C HTG VEEG  +F  M
Sbjct: 381 RPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLM 390

[Close]
BLAST of Carg16999 vs. TAIR10
Match: AT1G25360.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-14
Identity = 57/183 (31.15%), Postives = 80/183 (43.72%), Query Frame = 0 

Query: 54  ACVHGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSL 113
           A  +G Q H  + K GF + +   +AL+ MYAKC          V    R  F   P   
Sbjct: 432 AYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKC---------GVVEEARQVFRTMP--- 491

Query: 114 TVLDELGVENLVHVNNSLIDMYAIIATCQQHGHANQVVESLKEMLREEITPDYITFISVL 173
             LD              +   A+IA   QHGH  + V+  +EML++ I PD IT ++VL
Sbjct: 492 -CLDS-------------VSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVL 551

Query: 174 SACSHTGRVEEGFFYFNSM-------------------------LNRAKRFIELMPIKPE 212
           +ACSH G V++G  YF+SM                          + A+  IE +P KP 
Sbjct: 552 TACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPT 588

[Close]
BLAST of Carg16999 vs. TAIR10
Match: AT2G33680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 3.9e-14
Identity = 47/135 (34.81%), Postives = 68/135 (50.37%), Query Frame = 0 

Query: 58  GDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLD 117
           G Q+H    KHGF  EV + SAL  MY+KC            GS     ++  F  T   
Sbjct: 442 GKQVHGHTIKHGFGLEVPIGSALSTMYSKC------------GSLEDGNLV--FRRT--- 501

Query: 118 ELGVENLVHVNNSLIDMYAIIATCQQHGHANQVVESLKEMLREEITPDYITFISVLSACS 177
                     N  ++   A+I+    +G  ++ +E  +EML E + PD +TF++++SACS
Sbjct: 502 ---------PNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACS 550

Query: 178 HTGRVEEGFFYFNSM 193
           H G VE G+FYFN M
Sbjct: 562 HKGFVERGWFYFNMM 550

[Close]
BLAST of Carg16999 vs. Swiss-Prot
Match: sp|Q9SVP7|PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 8.1e-17
Identity = 58/177 (32.77%), Postives = 86/177 (48.59%), Query Frame = 0 

Query: 58  GDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLD 117
           G Q+H +I K G+ +E  V +AL+ MYAKC  +  AEK         +F+          
Sbjct: 711 GKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEK---------QFL---------- 770

Query: 118 ELGVENLVHVNNSLIDMYAIIATCQQHGHANQVVESLKEMLREEITPDYITFISVLSACS 177
           E+  +N V  N       AII    +HG  ++ ++S  +M+   + P+++T + VLSACS
Sbjct: 771 EVSTKNEVSWN-------AIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 830

Query: 178 HTGRVEEGFFYFNSM-------------------------LNRAKRFIELMPIKPEA 210
           H G V++G  YF SM                         L+RAK FI+ MPIKP+A
Sbjct: 831 HIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA 861

[Close]
BLAST of Carg16999 vs. Swiss-Prot
Match: sp|Q9LW63|PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.0e-16
Identity = 55/162 (33.95%), Postives = 82/162 (50.62%), Query Frame = 0 

Query: 31  FSSASDGCGNLASLLFYLLVDSLACVHGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDM 90
           FSS    C +LA+L             G Q+H  + + GF + +F+ASALVDMY+KC ++
Sbjct: 346 FSSVIPACAHLATLHL-----------GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNI 405

Query: 91  CTAEKNKVYGSCRSKFMIGPFSLTVLDELGVENLVHVNNSLIDMYAIIATCQQHGHANQV 150
             A   K++             + VLDE             +   AII     HGH ++ 
Sbjct: 406 KAA--RKIFD-----------RMNVLDE-------------VSWTAIIMGHALHGHGHEA 465

Query: 151 VESLKEMLREEITPDYITFISVLSACSHTGRVEEGFFYFNSM 193
           V   +EM R+ + P+ + F++VL+ACSH G V+E + YFNSM
Sbjct: 466 VSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSM 470

[Close]
BLAST of Carg16999 vs. Swiss-Prot
Match: sp|Q9LZ19|PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-13
Identity = 57/167 (34.13%), Postives = 82/167 (49.10%), Query Frame = 0 

Query: 26  QTLLLFSSASDGCGNLASLLFYLLVDSLACVHGDQMHFLIWKHGFHAEVFVASALVDMYA 85
           Q     SS    C NLA+L           + G QMH +I K GF + VFVAS+ VDMYA
Sbjct: 261 QNQFTLSSVICACSNLAAL-----------IEGKQMHAVICKSGFGSNVFVASSAVDMYA 320

Query: 86  KCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLDELGVENLVHVNNSLIDMYAIIATCQQHG 145
           KC            GS R  ++I         E+  +NL  + N++I  +A      +H 
Sbjct: 321 KC------------GSLRESYII-------FSEVQEKNL-ELWNTIISGFA------KHA 380

Query: 146 HANQVVESLKEMLREEITPDYITFISVLSACSHTGRVEEGFFYFNSM 193
              +V+   ++M ++ + P+ +TF S+LS C HTG VEEG  +F  M
Sbjct: 381 RPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLM 390

[Close]
BLAST of Carg16999 vs. Swiss-Prot
Match: sp|Q9FRI5|PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.4e-13
Identity = 57/183 (31.15%), Postives = 80/183 (43.72%), Query Frame = 0 

Query: 54  ACVHGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSL 113
           A  +G Q H  + K GF + +   +AL+ MYAKC          V    R  F   P   
Sbjct: 432 AYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKC---------GVVEEARQVFRTMP--- 491

Query: 114 TVLDELGVENLVHVNNSLIDMYAIIATCQQHGHANQVVESLKEMLREEITPDYITFISVL 173
             LD              +   A+IA   QHGH  + V+  +EML++ I PD IT ++VL
Sbjct: 492 -CLDS-------------VSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVL 551

Query: 174 SACSHTGRVEEGFFYFNSM-------------------------LNRAKRFIELMPIKPE 212
           +ACSH G V++G  YF+SM                          + A+  IE +P KP 
Sbjct: 552 TACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPT 588

[Close]
BLAST of Carg16999 vs. Swiss-Prot
Match: sp|P93005|PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-13
Identity = 47/135 (34.81%), Postives = 68/135 (50.37%), Query Frame = 0 

Query: 58  GDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLD 117
           G Q+H    KHGF  EV + SAL  MY+KC            GS     ++  F  T   
Sbjct: 442 GKQVHGHTIKHGFGLEVPIGSALSTMYSKC------------GSLEDGNLV--FRRT--- 501

Query: 118 ELGVENLVHVNNSLIDMYAIIATCQQHGHANQVVESLKEMLREEITPDYITFISVLSACS 177
                     N  ++   A+I+    +G  ++ +E  +EML E + PD +TF++++SACS
Sbjct: 502 ---------PNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACS 550

Query: 178 HTGRVEEGFFYFNSM 193
           H G VE G+FYFN M
Sbjct: 562 HKGFVERGWFYFNMM 550

[Close]
BLAST of Carg16999 vs. TrEMBL
Match: tr|A0A1S3BPE7|A0A1S3BPE7_CUCME (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492091 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.0e-37
Identity = 140/435 (32.18%), Postives = 158/435 (36.32%), Query Frame = 0 

Query: 16  NLYPKCGFASQTLLLFSSASDGCGNLAS-----------------LLFY----------- 75
           NLY KCG   QTLLLFSSA D   ++ S                 L F+           
Sbjct: 70  NLYAKCGCVDQTLLLFSSAPDVSKDVVSWTSLITQLTRSKRPFKALTFFNQMRLSGVYPN 129

Query: 76  ---------LLVDSLACVHGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEK--- 135
                       D++  VHG+QMH L+WKHGFHAEVFV SALVDMYAKCCDM  AEK   
Sbjct: 130 HYTLSAVLSACTDTMVSVHGEQMHSLVWKHGFHAEVFVVSALVDMYAKCCDMRMAEKVFE 189

Query: 136 -------------------NKVYGSCRSKF-MIGPFSLTVLDE----------------- 195
                              NK+Y      F  +   +LT LDE                 
Sbjct: 190 EMPVRNLVSWNSMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLA 249

Query: 196 -----------LGVENLVHVNNSLIDMY-------------------------------- 212
                      LGV NLV++NNSLIDMY                                
Sbjct: 250 FGKQVHGVALKLGVRNLVYINNSLIDMYSKCGLFNEVAKLFSNIGARDVVTWNIMIMACV 309

[Close]
BLAST of Carg16999 vs. TrEMBL
Match: tr|A0A0A0LVV0|A0A0A0LVV0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560780 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.8e-28
Identity = 90/206 (43.69%), Postives = 107/206 (51.94%), Query Frame = 0 

Query: 31  FSSASDGCGNLASLLFYLLVDSLACVHGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDM 90
           +SS    C NLA+L             G  +H  I + GF   + VAS+L+ MYAKC   
Sbjct: 292 YSSVLHSCANLAAL-----------YQGTLIHNQIIRSGFVKNLRVASSLITMYAKC--- 351

Query: 91  CTAEKNKVYGSCRSKFMIGPFSLTVLDELGVENLVHVNNSLIDMYAIIATCQQHGHANQV 150
                    GS    F I  F  T             + +++   AIIA CQQHGHAN V
Sbjct: 352 ---------GSLVDAFQI--FEET------------EDRNVVCWTAIIAACQQHGHANWV 411

Query: 151 VESLKEMLREEITPDYITFISVLSACSHTGRVEEGFFYFNSM------------------ 210
           VE  ++MLRE I PDYITF+SVLSACSHTGRVEEGFFYFNSM                  
Sbjct: 412 VELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVD 460

Query: 211 -------LNRAKRFIELMPIKPEAEL 212
                  L+RAKRFIELMPIKP+A +
Sbjct: 472 LLSRAGELDRAKRFIELMPIKPDASV 460

[Close]
BLAST of Carg16999 vs. TrEMBL
Match: tr|A0A2N9J223|A0A2N9J223_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58432 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-20
Identity = 75/186 (40.32%), Postives = 95/186 (51.08%), Query Frame = 0 

Query: 52  SLACV-HGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGP 111
           SLA +  G  +H  I K GF     + S+LV MYAKC            GS    + +  
Sbjct: 225 SLAALDQGSLIHDQIIKTGFVKNACIESSLVTMYAKC------------GSLGDAYRV-- 284

Query: 112 FSLTVLDELGVENLVHVNNSLIDMYAIIATCQQHGHANQVVESLKEMLREEITPDYITFI 171
                      EN+   + ++I   A+IA CQQHG  NQV+E  +EMLRE I PDYITF+
Sbjct: 285 ----------FENI--EDRNVICWTAMIAACQQHGCTNQVIELFEEMLREGIKPDYITFV 344

Query: 172 SVLSACSHTGRVEEGFFYFNSM-------------------------LNRAKRFIELMPI 212
           SVLSACS+ G VEEGF YF+SM                         L+ AKRFIE MPI
Sbjct: 345 SVLSACSYAGCVEEGFVYFDSMTKVHGMNPGPEHYACMADLLGRAGRLDEAKRFIESMPI 384

[Close]
BLAST of Carg16999 vs. TrEMBL
Match: tr|A0A022Q8M2|A0A022Q8M2_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a002297mg PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.8e-20
Identity = 76/203 (37.44%), Postives = 95/203 (46.80%), Query Frame = 0 

Query: 31  FSSASDGCGNLASLLFYLLVDSLACVHGDQMHFLIWKHGFHAEVFVASALVDMYAKCCDM 90
           FS+    C  +A+L             G  +H  I K GF A   VAS+LV MYAKC  +
Sbjct: 322 FSTVLHACAGIAAL-----------DQGCLVHNQITKTGFSANTCVASSLVTMYAKCGSL 381

Query: 91  CTAEKNKVYGSCRSKFMIGPFSLTVLDELGVENLVHVNNSLIDMYAIIATCQQHGHANQV 150
             A +                          EN  H   ++I   A+I+  QQHG A++V
Sbjct: 382 VDARR-----------------------AFAENQEH---NVISWTAMISAYQQHGCADRV 441

Query: 151 VESLKEMLREEITPDYITFISVLSACSHTGRVEEGFFYFNSM------------------ 209
           VE   EML+  I PDYITF+SVLSAC HTGRV+EGF YFN M                  
Sbjct: 442 VEMFDEMLKAGIKPDYITFVSVLSACGHTGRVDEGFSYFNLMSESYKMNPGLEHYACMVD 487

[Close]
BLAST of Carg16999 vs. TrEMBL
Match: tr|A0A061F539|A0A061F539_THECC (Tetratricopeptide repeat superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_026848 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 65/179 (36.31%), Postives = 91/179 (50.84%), Query Frame = 0 

Query: 58  GDQMHFLIWKHGFHAEVFVASALVDMYAKCCDMCTAEKNKVYGSCRSKFMIGPFSLTVLD 117
           G  +H  I K GF     +AS+L+ MYAKC  +  A +                   V +
Sbjct: 356 GTLIHNQIIKTGFSKNTCIASSLITMYAKCGSLDDARR-------------------VFE 415

Query: 118 ELGVENLVHVNNSLIDMYAIIATCQQHGHANQVVESLKEMLREEITPDYITFISVLSACS 177
           E+        N +++   A+IA CQQHG+ NQV++  ++ML + + PDYITF+ VLSACS
Sbjct: 416 EI-------KNRNVVCWTAMIAACQQHGNGNQVIDLFEKMLADGLKPDYITFVCVLSACS 475

Query: 178 HTGRVEEGFFYFNSM-------------------------LNRAKRFIELMPIKPEAEL 212
           HTGRVEEG+ YFNSM                         L+ AK+FI  M IKP++ +
Sbjct: 476 HTGRVEEGYAYFNSMEKVHGISPGHEHYACMVDLLGRAGQLDEAKKFIAQMRIKPDSSV 508

The following BLAST results are available for this feature:
BLAST of Carg16999 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023530039.17.3e-5960.26putative pentatricopeptide repeat-containing protein At3g15130 [Cucurbita pepo s... [more]
XP_008450508.16.0e-3732.18PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-... [more]
XP_023538639.16.0e-3732.41pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isofor... [more]
XP_022968835.17.9e-3732.41pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isofor... [more]
XP_022961446.12.3e-3632.41pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isofor... [more]
BLAST of Carg16999 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G13650.14.5e-1832.77Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G23330.12.2e-1733.95Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G04780.17.9e-1534.13Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G25360.11.3e-1431.15Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G33680.13.9e-1434.81Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Carg16999 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SVP7|PP307_ARATH8.1e-1732.77Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX... [more]
sp|Q9LW63|PP251_ARATH4.0e-1633.95Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th... [more]
sp|Q9LZ19|PP364_ARATH1.4e-1334.13Pentatricopeptide repeat-containing protein At5g04780, mitochondrial OS=Arabidop... [more]
sp|Q9FRI5|PPR57_ARATH2.4e-1331.15Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX... [more]
sp|P93005|PP181_ARATH7.1e-1334.81Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg16999 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BPE7|A0A1S3BPE7_CUCME4.0e-3732.18pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like OS=Cuc... [more]
tr|A0A0A0LVV0|A0A0A0LVV0_CUCSA5.8e-2843.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560780 PE=4 SV=1[more]
tr|A0A2N9J223|A0A2N9J223_FAGSY2.6e-2040.32Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58432 PE=4 SV=1[more]
tr|A0A022Q8M2|A0A022Q8M2_ERYGU5.8e-2037.44Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a002297mg PE... [more]
tr|A0A061F539|A0A061F539_THECC1.7e-1936.31Tetratricopeptide repeat superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_0... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16999-RACarg16999-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 167..194
e-value: 0.003
score: 15.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 13..209
e-value: 3.2E-14
score: 55.2
NoneNo IPR availablePANTHERPTHR24015:SF995SUBFAMILY NOT NAMEDcoord: 136..194
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 136..194

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16999CmaCh11G011880Cucurbita maxima (Rimu)carcmaB0651
Carg16999CmoCh11G012490Cucurbita moschata (Rifu)carcmoB0632
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg16999Cucurbita pepo (Zucchini)carcpeB0657
Carg16999Wild cucumber (PI 183967)carcpiB0504
Carg16999Cucumber (Chinese Long) v3carcucB0501
Carg16999Melon (DHL92) v3.5.1carmeB0473
Carg16999Melon (DHL92) v3.6.1carmedB0477