Carg16985 (gene) Silver-seed gourd

Overview
NameCarg16985
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptiontranscription initiation factor TFIID subunit 15
LocationCucurbita_argyrosperma_scaffold_061 : 771214 .. 772148 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTGAGAAAACGAAAACAGTTTTTGGATTGTGATATGATCGTTTCATTACAATATCAGGATGATGGTGAGATGTATGACGAGTTTGGAAACCTTAAGAAGAAGTTTCGAGCCAAATCCCAGCAAATGGAAGCCGGTCAGATAATACCAGGTGCTGGGCGGGCTGGATGGGAATTCGAAGAACTAGGTACGTGTCGGTTGACTAACACCGTGCTATTGTCCTCGGAAAATCGTTGATAATTCTTTGTGCTATTGATTACGTATTTACATCTTTGGCAAACTTACATTTTCAGGTGTAGTTGAGAAGGATAGAAGGGAGAGAAGTAGAGACCAAGGAAGGGAATGGAATGACAGAGACAGAGACCGAGACCGAGATGGTAGCAGAAATAAAGAAAGAGAACCTAGGGAAAGACATCGGAGTCGAAGCAGAGAGCGGGACAGGGGTCGAGATCGTGATCGTGATCGAGATCGAGATCGAGACTATGATTTCGAGCGAGATAAAGAACATGGAAGGGAGAAGGAGCACCGGAGCAGGCACCGGTATTGAAGACCTTGGATTAAAACTTTATGGCAGAACCTGGTGGGTCTCATTTTTTATGAAAGATATTCTATTTTTGGTATTATTGTGATTACATCTTCTTGGCGCTTTTAAGAATTCTATCAGAATACGAATTGAATTTGCAAAGCAATTGGAATTGTTTGGCTGCCTTTTCACCACTAACTCCAAACTTGTAATCAAGTTCACAGATTAGCAAACTTAGGCAATCTTATTTATATGTACACGACTCTCGAAAATATTTATATGTACACTACTCTCGAAAATAGACATGAGAAATTGAAAAACACACTTGTATTTGCACGACTCTCGAGCTTCTGCCAACGACTGTTATCTCACGTTACAATTTGAAACTAAATCGTAGCGTGAGTGAGTA

mRNA sequence

ATGATTTTGAGAAAACGAAAACAGTTTTTGGATTGTGATATGATCGTTTCATTACAATATCAGGATGATGGTGAGATGTATGACGAGTTTGGAAACCTTAAGAAGAAGTTTCGAGCCAAATCCCAGCAAATGGAAGCCGGTCAGATAATACCAGGTGCTGGGCGGGCTGGATGGGAATTCGAAGAACTAGGTGTAGTTGAGAAGGATAGAAGGGAGAGAAGTAGAGACCAAGGAAGGGAATGGAATGACAGAGACAGAGACCGAGACCGAGATGGTAGCAGAAATAAAGAAAGAGAACCTAGGGAAAGACATCGGAGTCGAAGCAGAGAGCGGGACAGGGGTCGAGATCGTGATCGTGATCGAGATCGAGATCGAGACTATGATTTCGAGCGAGATAAAGAACATGGAAGGGAGAAGGAGCACCGGAGCAGGCACCGGTATTGAAGACCTTGGATTAAAACTTTATGGCAGAACCTGGTGGGTCTCATTTTTTATGAAAGATATTCTATTTTTGGTATTATTGTGATTACATCTTCTTGGCGCTTTTAAGAATTCTATCAGAATACGAATTGAATTTGCAAAGCAATTGGAATTGTTTGGCTGCCTTTTCACCACTAACTCCAAACTTGTAATCAAGTTCACAGATTAGCAAACTTAGGCAATCTTATTTATATGTACACGACTCTCGAAAATATTTATATGTACACTACTCTCGAAAATAGACATGAGAAATTGAAAAACACACTTGTATTTGCACGACTCTCGAGCTTCTGCCAACGACTGTTATCTCACGTTACAATTTGAAACTAAATCGTAGCGTGAGTGAGTA

Coding sequence (CDS)

ATGATTTTGAGAAAACGAAAACAGTTTTTGGATTGTGATATGATCGTTTCATTACAATATCAGGATGATGGTGAGATGTATGACGAGTTTGGAAACCTTAAGAAGAAGTTTCGAGCCAAATCCCAGCAAATGGAAGCCGGTCAGATAATACCAGGTGCTGGGCGGGCTGGATGGGAATTCGAAGAACTAGGTGTAGTTGAGAAGGATAGAAGGGAGAGAAGTAGAGACCAAGGAAGGGAATGGAATGACAGAGACAGAGACCGAGACCGAGATGGTAGCAGAAATAAAGAAAGAGAACCTAGGGAAAGACATCGGAGTCGAAGCAGAGAGCGGGACAGGGGTCGAGATCGTGATCGTGATCGAGATCGAGATCGAGACTATGATTTCGAGCGAGATAAAGAACATGGAAGGGAGAAGGAGCACCGGAGCAGGCACCGGTATTGA

Protein sequence

MILRKRKQFLDCDMIVSLQYQDDGEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRRERSRDQGREWNDRDRDRDRDGSRNKEREPRERHRSRSRERDRGRDRDRDRDRDRDYDFERDKEHGREKEHRSRHRY
Homology
[Close]
BLAST of Carg16985 vs. NCBI nr
Match: XP_022931706.1 (transcription initiation factor TFIID subunit 15-like [Cucurbita moschata])

HSP 1 Score: 101.7 bits (252), Expect = 2.2e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 24  GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRR 72
           GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRR
Sbjct: 286 GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRR 333

[Close]
BLAST of Carg16985 vs. NCBI nr
Match: XP_022969708.1 (transcription initiation factor TFIID subunit 15-like [Cucurbita maxima])

HSP 1 Score: 101.7 bits (252), Expect = 2.2e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 24  GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRR 72
           GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRR
Sbjct: 286 GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRR 333

[Close]
BLAST of Carg16985 vs. NCBI nr
Match: XP_023531993.1 (transcription initiation factor TFIID subunit 15-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.7 bits (252), Expect = 2.2e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 24  GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRR 72
           GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRR
Sbjct: 286 GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRR 333

[Close]
BLAST of Carg16985 vs. NCBI nr
Match: XP_022151961.1 (transcription initiation factor TFIID subunit 15 [Momordica charantia] >XP_022151962.1 transcription initiation factor TFIID subunit 15 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 24  GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDR 71
           GEMYDEFGNLKKKFRAKSQQMEAG+I+PGAGRAGWE EELGV+EKDR
Sbjct: 282 GEMYDEFGNLKKKFRAKSQQMEAGRILPGAGRAGWEVEELGVIEKDR 328

[Close]
BLAST of Carg16985 vs. NCBI nr
Match: XP_011652224.1 (PREDICTED: transcription initiation factor TFIID subunit 15 [Cucumis sativus] >XP_011652225.1 PREDICTED: transcription initiation factor TFIID subunit 15 [Cucumis sativus] >KGN59538.1 hypothetical protein Csa_3G824830 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 24  GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKD 70
           GEMYDEFGNLKKKFRAKSQQMEAG+I+PGAGRAGWE EELGVVEKD
Sbjct: 285 GEMYDEFGNLKKKFRAKSQQMEAGRILPGAGRAGWEVEELGVVEKD 330

[Close]
BLAST of Carg16985 vs. TAIR10
Match: AT1G50300.1 (TBP-associated factor 15)

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-09
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 24  GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKD 70
           GEMYDEFGNLKKK+R K+ Q +    +  AGRAGWE EELG ++KD
Sbjct: 269 GEMYDEFGNLKKKYRVKTNQADTRPAV-AAGRAGWEVEELG-IDKD 312

[Close]
BLAST of Carg16985 vs. Swiss-Prot
Match: sp|Q9AST1|TAF15_ARATH (Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702 GN=TAF15 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.4e-08
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 24  GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKD 70
           GEMYDEFGNLKKK+R K+ Q +    +  AGRAGWE EELG ++KD
Sbjct: 269 GEMYDEFGNLKKKYRVKTNQADTRPAV-AAGRAGWEVEELG-IDKD 312

[Close]
BLAST of Carg16985 vs. TrEMBL
Match: tr|A0A1S3B7U8|A0A1S3B7U8_CUCME (transcription initiation factor TFIID subunit 15 OS=Cucumis melo OX=3656 GN=LOC103486976 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.8e-16
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 24  GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKD 70
           GEMYDEFGNLKKKFRAKSQQMEAG+I+PGAGRAGWE EELGVVEKD
Sbjct: 285 GEMYDEFGNLKKKFRAKSQQMEAGRILPGAGRAGWEVEELGVVEKD 330

[Close]
BLAST of Carg16985 vs. TrEMBL
Match: tr|A0A0A0LCQ7|A0A0A0LCQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824830 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.8e-16
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 24  GEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKD 70
           GEMYDEFGNLKKKFRAKSQQMEAG+I+PGAGRAGWE EELGVVEKD
Sbjct: 285 GEMYDEFGNLKKKFRAKSQQMEAGRILPGAGRAGWEVEELGVVEKD 330

[Close]
BLAST of Carg16985 vs. TrEMBL
Match: tr|A0A067EQ34|A0A067EQ34_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g016526mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.5e-15
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 22  DDGEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRR 72
           DDGE+YDEFGNLKKKFRAK+QQ+EA Q++PGAGRAGWE EELGV ++D R
Sbjct: 276 DDGELYDEFGNLKKKFRAKTQQVEAAQVLPGAGRAGWEVEELGVTDRDGR 325

[Close]
BLAST of Carg16985 vs. TrEMBL
Match: tr|V4TGM1|V4TGM1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10031922mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.5e-15
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 22  DDGEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRR 72
           DDGE+YDEFGNLKKKFRAK+QQ+EA Q++PGAGRAGWE EELGV ++D R
Sbjct: 248 DDGELYDEFGNLKKKFRAKTQQVEAAQVLPGAGRAGWEVEELGVTDRDGR 297

[Close]
BLAST of Carg16985 vs. TrEMBL
Match: tr|A0A2H5NT55|A0A2H5NT55_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_073570 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 22  DDGEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKD 70
           DDGE+YDEFGNLKKKFRAK+QQ+EA Q++PGAGRAGWE EELGV ++D
Sbjct: 211 DDGELYDEFGNLKKKFRAKTQQVEAAQVLPGAGRAGWEVEELGVTDRD 258

The following BLAST results are available for this feature:
BLAST of Carg16985 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022931706.12.2e-18100.00transcription initiation factor TFIID subunit 15-like [Cucurbita moschata][more]
XP_022969708.12.2e-18100.00transcription initiation factor TFIID subunit 15-like [Cucurbita maxima][more]
XP_023531993.12.2e-18100.00transcription initiation factor TFIID subunit 15-like [Cucurbita pepo subsp. pep... [more]
XP_022151961.13.5e-1691.49transcription initiation factor TFIID subunit 15 [Momordica charantia] >XP_02215... [more]
XP_011652224.11.0e-1593.48PREDICTED: transcription initiation factor TFIID subunit 15 [Cucumis sativus] >X... [more]
BLAST of Carg16985 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G50300.13.0e-0963.04TBP-associated factor 15[more]
BLAST of Carg16985 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9AST1|TAF15_ARATH5.4e-0863.04Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702... [more]
BLAST of Carg16985 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B7U8|A0A1S3B7U8_CUCME6.8e-1693.48transcription initiation factor TFIID subunit 15 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A0A0LCQ7|A0A0A0LCQ7_CUCSA6.8e-1693.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824830 PE=4 SV=1[more]
tr|A0A067EQ34|A0A067EQ34_CITSI7.5e-1578.00Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g016526mg PE=4 SV=1[more]
tr|V4TGM1|V4TGM1_9ROSI7.5e-1578.00Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10031922mg PE=4 ... [more]
tr|A0A2H5NT55|A0A2H5NT55_CITUN1.7e-1479.17Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_073570 PE=4... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16985-RACarg16985-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..139

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16985CmaCh11G012020Cucurbita maxima (Rimu)carcmaB0651
Carg16985CmoCh11G012370Cucurbita moschata (Rifu)carcmoB0632
Carg16985Cp4.1LG04g02120Cucurbita pepo (Zucchini)carcpeB0657
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None