Carg16923 (gene) Silver-seed gourd

Overview
NameCarg16923
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_061 : 114619 .. 115199 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGACTATACTTGGTATCGTCAACCTAGCTCCCACAATTGCTCCTTTGATCCTCCAATGGCCGTCGCTGTATTTCCCAATCTCCGCTTGGATTCTGTCCCATTCCTGTTGGGCCTCTTGCTTTGATCTCAACAGGAAAAATTGCTGCAGGAGCTCCGGCATTTGGTGTGGACCTTCCACCATCGTTGATGCGCAACGTCGCTTGCACATTCCAGTTGCAGTCGTAATCTCTGAAGCACATCCGTGGCTTGTTTCCCTAGTAATGAAGAACATAAAGGAGGATTGGTAGGTCAGACCCAATAGCCTTGTTTTCATTTTCTTTGTTTCTTGAAGTTCTTCAAGAAATTCATGTGTTTTGGGGTTCTATGCCACCATGTGAATACTTCGTTTGAGTATCCTTGGTCACCTCCATTGTAGGATTCGAATTCGTTGATATGATCCATTAGGAGTTGGAATGTGCAATTTGATGGCTCTATGTGCATTACTCCTGAGTTGAAGAGGGTGCCATTGTTTCCTGTTGTGGAGATCTCTGGCATTCCTAATAAGGTCGGCGTCCATGAAGATCATCTTGTCATAGTC

mRNA sequence

ATGTTGACTATACTTGGTATCGTCAACCTAGCTCCCACAATTGCTCCTTTGATCCTCCAATGGCCGTCGCTGTATTTCCCAATCTCCGCTTGGATTCTGTCCCATTCCTGTTGGGCCTCTTGCTTTGATCTCAACAGGAAAAATTGCTGCAGGAGCTCCGGCATTTGGTGTGGACCTTCCACCATCGTTGATGCGCAACGTCGCTTGCACATTCCAGTTGCAGTCGTAATCTCTGAAGCACATCCGTGGCTTGTTTCCCTAGTAATGAAGAACATAAAGGAGGATTGGAGTTGGAATGTGCAATTTGATGGCTCTATGTGCATTACTCCTGAGTTGAAGAGGGTGCCATTGTTTCCTGTTGTGGAGATCTCTGGCATTCCTAATAAGGTCGGCGTCCATGAAGATCATCTTGTCATAGTC

Coding sequence (CDS)

ATGTTGACTATACTTGGTATCGTCAACCTAGCTCCCACAATTGCTCCTTTGATCCTCCAATGGCCGTCGCTGTATTTCCCAATCTCCGCTTGGATTCTGTCCCATTCCTGTTGGGCCTCTTGCTTTGATCTCAACAGGAAAAATTGCTGCAGGAGCTCCGGCATTTGGTGTGGACCTTCCACCATCGTTGATGCGCAACGTCGCTTGCACATTCCAGTTGCAGTCGTAATCTCTGAAGCACATCCGTGGCTTGTTTCCCTAGTAATGAAGAACATAAAGGAGGATTGGAGTTGGAATGTGCAATTTGATGGCTCTATGTGCATTACTCCTGAGTTGAAGAGGGTGCCATTGTTTCCTGTTGTGGAGATCTCTGGCATTCCTAATAAGGTCGGCGTCCATGAAGATCATCTTGTCATAGTC

Protein sequence

MLTILGIVNLAPTIAPLILQWPSLYFPISAWILSHSCWASCFDLNRKNCCRSSGIWCGPSTIVDAQRRLHIPVAVVISEAHPWLVSLVMKNIKEDWSWNVQFDGSMCITPELKRVPLFPVVEISGIPNKVGVHEDHLVIV
Homology
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BLAST of Carg16923 vs. TrEMBL
Match: tr|A0A0A9K8G6|A0A0A9K8G6_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 75  VVISEAHPWLVSL--VMKNIKEDWSWNVQFDGSMCITPELKRVPLFPVVEISGIPNKVGV 133
           V IS  +PW   L  V+  +    SWNVQF+GSM +TPELK V L PV  ISGI NK  +
Sbjct: 10  VNISFRYPWSPPLYDVISLMCSINSWNVQFEGSMTMTPELKSVALLPVAVISGIANKKSI 69

The following BLAST results are available for this feature:
BLAST of Carg16923 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16923 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg16923 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg16923 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A9K8G6|A0A0A9K8G6_ARUDO1.5e-0451.67Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16923-RACarg16923-RAmRNA