Carg16883 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16883
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Arabinose 5-phosphate isomerase
Location	Cucurbita_argyrosperma_scaffold_105 : 645392 .. 646201 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAATTAGTGGAGCTTACGAGCAAAGGATGCGGCTGCCTACTTGTCATAGATGAGGAACATCACCTGATTGGGACATTCACAGATGGTGATTTGCGGCGCACTCTCAAAGCTAGTGGTGAAGCCATCTTCAAGCTCACCGTAGGCCAAATGTGCAACAGGTATCAATCTTTAATACCCACTTGTTTTAGCTGACTCCATGAGAGGTACTTGCTTGTACAAGATCTTGCTGTTTGTTGAACTTGTCCCGTATGGCAGGAACCCGAGAACGATCGATCCCGAGGCGATGGCGGTCGACGCAATGAAAAAGATGGAAGCACCGCCATCTCCTGTGCAATTTCTGCCTGTTATCAATCAGCAAGCTATGTTGATTGGCATTATCACATTACATGGCCTAGTTTCTGCAGGACTGTGAGTGGCATATGTCTCCCATTTCTTTGTCTGCATTAGAGGTTTCTATTTTTTGTGCAACACTGTTCATCATTGATAGCCCTGTCTAAGTGTAGTGATTACATAAGTGTAAGAAAACTCGATACGTAGAGGATGAATCATGTCGTTTTCATATATTTGTCTTTATAGGGCATGTGAGAACCATTACTACTCTCGAAAACTCTCGAAAACATAGGTCAACGGATTTAGGCATATAACCTTGAGAAAGATGCTAGAAGTTTAAATATTTCTGATACGGATAGTGTTGAGCTTAGAATGAAGATGTTCGATCGTAAATCTCTCCACCATATACACATACTCAAGTGAAAAATAAGTTAGATTCTACACGACCTGTAATGGCCCAAACCCACCTCTAGC

mRNA sequence

ATGGATCAATTAGTGGAGCTTACGAGCAAAGGATGCGGCTGCCTACTTGTCATAGATGAGGAACATCACCTGATTGGGACATTCACAGATGGTGATTTGCGGCGCACTCTCAAAGCTAGTGGTGAAGCCATCTTCAAGCTCACCGTAGGCCAAATGTGCAACAGGAACCCGAGAACGATCGATCCCGAGGCGATGGCGGTCGACGCAATGAAAAAGATGGAAGCACCGCCATCTCCTGTGCAATTTCTGCCTGTTATCAATCAGCAAGCTATGTTGATTGGCATTATCACATTACATGGCCTAGTTTCTGCAGGACTGTGAGTGGCATATGTCTCCCATTTCTTTGTCTGCATTAGAGGTTTCTATTTTTTGTGCAACACTGTTCATCATTGATAGCCCTGTCTAAGTGTAGTGATTACATAAGTGTAAGAAAACTCGATACGTAGAGGATGAATCATGTCGTTTTCATATATTTGTCTTTATAGGGCATGTGAGAACCATTACTACTCTCGAAAACTCTCGAAAACATAGGTCAACGGATTTAGGCATATAACCTTGAGAAAGATGCTAGAAGTTTAAATATTTCTGATACGGATAGTGTTGAGCTTAGAATGAAGATGTTCGATCGTAAATCTCTCCACCATATACACATACTCAAGTGAAAAATAAGTTAGATTCTACACGACCTGTAATGGCCCAAACCCACCTCTAGC

Coding sequence (CDS)

ATGGATCAATTAGTGGAGCTTACGAGCAAAGGATGCGGCTGCCTACTTGTCATAGATGAGGAACATCACCTGATTGGGACATTCACAGATGGTGATTTGCGGCGCACTCTCAAAGCTAGTGGTGAAGCCATCTTCAAGCTCACCGTAGGCCAAATGTGCAACAGGAACCCGAGAACGATCGATCCCGAGGCGATGGCGGTCGACGCAATGAAAAAGATGGAAGCACCGCCATCTCCTGTGCAATTTCTGCCTGTTATCAATCAGCAAGCTATGTTGATTGGCATTATCACATTACATGGCCTAGTTTCTGCAGGACTGTGA

Protein sequence

MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTIDPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL

Homology

[Close]

BLAST of Carg16883 vs. NCBI nr
Match: XP_022963934.1 (probable arabinose 5-phosphate isomerase [Cucurbita moschata])

HSP 1 Score: 214.2 bits (544), Expect = 2.2e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 60
           MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI
Sbjct: 245 MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 304

Query: 61  DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 107
           DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL
Sbjct: 305 DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 350

[Close]

BLAST of Carg16883 vs. NCBI nr
Match: XP_023554677.1 (probable arabinose 5-phosphate isomerase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.7 bits (535), Expect = 2.4e-51
Identity = 104/106 (98.11%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 60
           MDQLVELTSKGCGCLLVID+E+HLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI
Sbjct: 248 MDQLVELTSKGCGCLLVIDDEYHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 307

Query: 61  DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 107
           DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL
Sbjct: 308 DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 353

[Close]

BLAST of Carg16883 vs. NCBI nr
Match: XP_022967433.1 (probable arabinose 5-phosphate isomerase [Cucurbita maxima])

HSP 1 Score: 209.5 bits (532), Expect = 5.4e-51
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 60
           MDQLVELTSKGCGCLLVIDEE+HLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI
Sbjct: 245 MDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 304

Query: 61  DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 107
           DPEAMAVDAMKKMEAPPSPVQFLPVINQQ MLIGIITLHGLVSAGL
Sbjct: 305 DPEAMAVDAMKKMEAPPSPVQFLPVINQQDMLIGIITLHGLVSAGL 350

[Close]

BLAST of Carg16883 vs. NCBI nr
Match: XP_022931177.1 (probable arabinose 5-phosphate isomerase [Cucurbita moschata])

HSP 1 Score: 201.4 bits (511), Expect = 1.5e-48
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 60
           MDQLVELTSKGCGCLLVIDEE+HLIGTFTDGDLRRTLKASGE IFKLTVGQMCNR PRTI
Sbjct: 247 MDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGQMCNRKPRTI 306

Query: 61  DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 107
           DPEAMAVDAMKKMEAPPSPVQFLPVIN Q MLIGI+TLHGLVS+GL
Sbjct: 307 DPEAMAVDAMKKMEAPPSPVQFLPVINLQNMLIGIVTLHGLVSSGL 352

[Close]

BLAST of Carg16883 vs. NCBI nr
Match: XP_022995847.1 (probable arabinose 5-phosphate isomerase [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 1.5e-48
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 60
           MDQLVELTSKGCGCLLVIDEE+HLIGTFTDGDLRRTLKASGE IFKLTVGQMCNR PRTI
Sbjct: 247 MDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGQMCNRKPRTI 306

Query: 61  DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 107
           DPEAMAVDAMKKMEAPPSPVQFLPVIN Q MLIGI+TLHGLVS+GL
Sbjct: 307 DPEAMAVDAMKKMEAPPSPVQFLPVINLQNMLIGIVTLHGLVSSGL 352

[Close]

BLAST of Carg16883 vs. TAIR10
Match: AT3G54690.1 (Sugar isomerase (SIS) family protein)

HSP 1 Score: 184.9 bits (468), Expect = 2.6e-47
Identity = 89/106 (83.96%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 60
           MDQLVELTSKGCGCLLV+DE   LIGTFTDGDLRRTLKASGEAIFKL+VG+MCNR PRTI
Sbjct: 245 MDQLVELTSKGCGCLLVVDEHSRLIGTFTDGDLRRTLKASGEAIFKLSVGEMCNRKPRTI 304

Query: 61  DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 107
            PE MAV+AMKKME+PPSPVQFLPV+N+   LIGI+TLHGLVSAGL
Sbjct: 305 GPETMAVEAMKKMESPPSPVQFLPVVNEDNTLIGIVTLHGLVSAGL 350

[Close]

BLAST of Carg16883 vs. Swiss-Prot
Match: sp|Q9M1T1|SETH3_ARATH (Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana OX=3702 GN=SETH3 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-46
Identity = 89/106 (83.96%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 60
           MDQLVELTSKGCGCLLV+DE   LIGTFTDGDLRRTLKASGEAIFKL+VG+MCNR PRTI
Sbjct: 245 MDQLVELTSKGCGCLLVVDEHSRLIGTFTDGDLRRTLKASGEAIFKLSVGEMCNRKPRTI 304

Query: 61  DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 107
            PE MAV+AMKKME+PPSPVQFLPV+N+   LIGI+TLHGLVSAGL
Sbjct: 305 GPETMAVEAMKKMESPPSPVQFLPVVNEDNTLIGIVTLHGLVSAGL 350

[Close]

BLAST of Carg16883 vs. Swiss-Prot
Match: sp|O84404|Y399_CHLTR (Uncharacterized protein CT_399 OS=Chlamydia trachomatis (strain D/UW-3/Cx) OX=272561 GN=CT_399 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.2e-13
Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 2   DQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTID 61
           + L  L+S G GC+ V++E   L+G FTDGDLRR L   G  I    + Q+  RNP+ I 
Sbjct: 222 ESLPTLSSYGYGCVCVVNELFELLGIFTDGDLRRGLSEYGGDILAYPLQQIMTRNPKVIS 281

Query: 62  PEAMAVDAMKKMEAPPSPVQFLPVIN--QQAMLIGIITLHGLVSAGL 107
            ++  + +++ ME+  +PV  LPV++  QQ  ++G++ +H L  AGL
Sbjct: 282 EDSDVLLSLEMMES-GNPVTVLPVVDAQQQRFIVGLLHMHALARAGL 327

[Close]

BLAST of Carg16883 vs. Swiss-Prot
Match: sp|Q9PJZ7|Y679_CHLMU (Uncharacterized protein TC_0679 OS=Chlamydia muridarum (strain MoPn / Nigg) OX=243161 GN=TC_0679 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.2e-13
Identity = 40/107 (37.38%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 2   DQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTID 61
           + L  L+S G GC+ V++E+  L+G FTDGDLRR L   G AI +  + Q+  R P+ I 
Sbjct: 222 EALTVLSSYGYGCVCVVNEQFELLGIFTDGDLRRGLSECGGAILECPLEQVMTRKPKVIS 281

Query: 62  PEAMAVDAMKKMEAPPSPVQFLPVIN--QQAMLIGIITLHGLVSAGL 107
            ++  +  ++ ME+  +PV  LPV++   Q  ++G++ +H L  AGL
Sbjct: 282 EDSDVLLGLEMMES-GNPVTVLPVVDAQHQRFIVGLLHMHTLARAGL 327

[Close]

BLAST of Carg16883 vs. Swiss-Prot
Match: sp|Q9Z826|Y526_CHLPN (Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 OS=Chlamydia pneumoniae OX=83558 GN=CPn_0526 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-12
Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 11  GCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTIDPEAMAVDAM 70
           GCGC+ ++D +  L+G FTDGDLRR+L + G  +  L++ ++   NPR I  ++    A+
Sbjct: 232 GCGCVCIVDPQFRLMGIFTDGDLRRSLASYGGEVLSLSLEKVMTANPRCITEDSDIAIAL 291

Query: 71  KKMEAPPSPVQFLPVIN--QQAMLIGIITLHGLVSAGL 107
           + ME+  SPV  LPV++  +   + G++ +H L  AGL
Sbjct: 292 QLMES-SSPVAVLPVLDNEENRHVTGLLHMHTLAKAGL 328

[Close]

BLAST of Carg16883 vs. Swiss-Prot
Match: sp|O67500|Y1546_AQUAE (Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_1546 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-11
Identity = 37/105 (35.24%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 2   DQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTID 61
           + ++E+T+KG G   V++EE  L+G  TDGDLRR +   G +        +  +NP+TI 
Sbjct: 220 EAIIEMTAKGFGATAVVNEEGKLVGIITDGDLRRFVNRGG-SFENTRAKDVMTKNPKTIK 279

Query: 62  PEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 107
           P+ +A+ A++KME     +  L V+N++   IGI+ +H ++ A L
Sbjct: 280 PDELALKALRKME--DHNITVLIVVNEENEPIGILHMHDILKAEL 321

[Close]

BLAST of Carg16883 vs. TrEMBL
Match: tr|A0A1S3BI02|A0A1S3BI02_CUCME (probable arabinose 5-phosphate isomerase OS=Cucumis melo OX=3656 GN=LOC103489865 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.7e-48
Identity = 98/106 (92.45%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 60
           MDQLVELTSKGCGCLLVID+E+ LIGTFTDGDLRRTLKASGEAIFKLTVG+MCNR PRTI
Sbjct: 247 MDQLVELTSKGCGCLLVIDDEYRLIGTFTDGDLRRTLKASGEAIFKLTVGEMCNRKPRTI 306

Query: 61  DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 107
           DPEAMAVDAMKKMEAPPSPVQFLPVINQQ +LIGI+TLHGLVSAGL
Sbjct: 307 DPEAMAVDAMKKMEAPPSPVQFLPVINQQTILIGIVTLHGLVSAGL 352

[Close]

BLAST of Carg16883 vs. TrEMBL
Match: tr|A0A0A0L7X3|A0A0A0L7X3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G379750 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.7e-48
Identity = 98/106 (92.45%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 60
           MDQLVELTSKGCGCLLVID+E+ LIGTFTDGDLRRTLKASGEAIFKLTVG+MCNR PRTI
Sbjct: 243 MDQLVELTSKGCGCLLVIDDEYRLIGTFTDGDLRRTLKASGEAIFKLTVGEMCNRKPRTI 302

Query: 61  DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 107
           DPEAMAVDAMKKMEAPPSPVQFLPVINQQ +LIGI+TLHGLVSAGL
Sbjct: 303 DPEAMAVDAMKKMEAPPSPVQFLPVINQQTILIGIVTLHGLVSAGL 348

[Close]

BLAST of Carg16883 vs. TrEMBL
Match: tr|A0A067K2N0|A0A067K2N0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17678 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.2e-47
Identity = 95/106 (89.62%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 60
           MDQLVELTSKGCGCLLVI+EE+HLIGTFTDGDLRRTLKASGE IFKLTVG+MCNRNPRTI
Sbjct: 237 MDQLVELTSKGCGCLLVINEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRNPRTI 296

Query: 61  DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 107
            P+AMAV+AMKKME+PPSPVQFLPVINQQ +LIGI+TLHGLVSAGL
Sbjct: 297 GPDAMAVEAMKKMESPPSPVQFLPVINQQNILIGIVTLHGLVSAGL 342

[Close]

BLAST of Carg16883 vs. TrEMBL
Match: tr|A9PBR5|A9PBR5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G037400v3 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.1e-47
Identity = 95/106 (89.62%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 60
           MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVG+MCNRNPRTI
Sbjct: 236 MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGEMCNRNPRTI 295

Query: 61  DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 107
            P+AMAV+AMKKME+PPSPVQFLPVI    +LIGI+TLHGLVSAGL
Sbjct: 296 GPDAMAVEAMKKMESPPSPVQFLPVIKDDNILIGIVTLHGLVSAGL 341

[Close]

BLAST of Carg16883 vs. TrEMBL
Match: tr|A0A2P6PV66|A0A2P6PV66_ROSCH (Putative arabinose-5-phosphate isomerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0287891 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.2e-47
Identity = 93/106 (87.74%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGQMCNRNPRTI 60
           M+QLVELTSKGCGCLLVID+EHHLIGTFTDGDLRRTLKASGEAIFKLTVG+MCNRNPRTI
Sbjct: 247 MEQLVELTSKGCGCLLVIDDEHHLIGTFTDGDLRRTLKASGEAIFKLTVGEMCNRNPRTI 306

Query: 61  DPEAMAVDAMKKMEAPPSPVQFLPVINQQAMLIGIITLHGLVSAGL 107
            P+AMAVDAM+KMEAPPSPVQFLPVI+++ ++IGI+TLHGLVSAGL
Sbjct: 307 GPDAMAVDAMQKMEAPPSPVQFLPVIDEKNVVIGIVTLHGLVSAGL 352

The following BLAST results are available for this feature:

BLAST of Carg16883 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963934.1	2.2e-52	100.00	probable arabinose 5-phosphate isomerase [Cucurbita moschata]	[more]
XP_023554677.1	2.4e-51	98.11	probable arabinose 5-phosphate isomerase [Cucurbita pepo subsp. pepo]	[more]
XP_022967433.1	5.4e-51	98.11	probable arabinose 5-phosphate isomerase [Cucurbita maxima]	[more]
XP_022931177.1	1.5e-48	93.40	probable arabinose 5-phosphate isomerase [Cucurbita moschata]	[more]
XP_022995847.1	1.5e-48	93.40	probable arabinose 5-phosphate isomerase [Cucurbita maxima]	[more]

BLAST of Carg16883 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54690.1	2.6e-47	83.96	Sugar isomerase (SIS) family protein	[more]

BLAST of Carg16883 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M1T1\|SETH3_ARATH	4.7e-46	83.96	Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana OX=3702 GN=SETH...	[more]
sp\|O84404\|Y399_CHLTR	5.2e-13	38.32	Uncharacterized protein CT_399 OS=Chlamydia trachomatis (strain D/UW-3/Cx) OX=27...	[more]
sp\|Q9PJZ7\|Y679_CHLMU	5.2e-13	37.38	Uncharacterized protein TC_0679 OS=Chlamydia muridarum (strain MoPn / Nigg) OX=2...	[more]
sp\|Q9Z826\|Y526_CHLPN	2.6e-12	37.76	Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 OS=Chlamydia pneumoniae...	[more]
sp\|O67500\|Y1546_AQUAE	1.3e-11	35.24	Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus (strain VF5) ...	[more]

BLAST of Carg16883 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BI02\|A0A1S3BI02_CUCME	1.7e-48	92.45	probable arabinose 5-phosphate isomerase OS=Cucumis melo OX=3656 GN=LOC103489865...	[more]
tr\|A0A0A0L7X3\|A0A0A0L7X3_CUCSA	1.7e-48	92.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G379750 PE=3 SV=1	[more]
tr\|A0A067K2N0\|A0A067K2N0_JATCU	3.2e-47	89.62	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17678 PE=3 SV=1	[more]
tr\|A9PBR5\|A9PBR5_POPTR	4.1e-47	89.62	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G037400v3 PE=...	[more]
tr\|A0A2P6PV66\|A0A2P6PV66_ROSCH	9.2e-47	87.74	Putative arabinose-5-phosphate isomerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000644	CBS_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16883-RA	Carg16883-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000644	CBS domain	PFAM	PF00571	CBS	coord: 49..104 e-value: 1.5E-7 score: 31.6 coord: 6..38 e-value: 4.6E-4 score: 20.5
IPR000644	CBS domain	PROSITE	PS51371	CBS	coord: 53..106 score: 9.992
IPR000644	CBS domain	PROSITE	PS51371	CBS	coord: 1..44 score: 7.75
None	No IPR available	GENE3D	G3DSA:3.10.580.10		coord: 1..104 e-value: 1.0E-25 score: 92.4
None	No IPR available	PANTHER	PTHR11911:SF62	ARABINOSE 5-PHOSPHATE ISOMERASE-RELATED	coord: 1..106
None	No IPR available	PANTHER	PTHR11911	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED	coord: 1..106
None	No IPR available	CDD	cd04604	CBS_pair_KpsF_GutQ_assoc	coord: 1..104 e-value: 2.75376E-35 score: 117.59
None	No IPR available	SUPERFAMILY	SSF54631	CBS-domain pair	coord: 4..104

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16883	Silver-seed gourd	carcarB262
Carg16883	Silver-seed gourd	carcarB272
Carg16883	Silver-seed gourd	carcarB599
Carg16883	Silver-seed gourd	carcarB600
Carg16883	Silver-seed gourd	carcarB601
Carg16883	Cucumber (Gy14) v2	carcgybB0745
Carg16883	Cucumber (Gy14) v2	carcgybB0747
Carg16883	Cucumber (Gy14) v1	carcgyB0847
Carg16883	Cucumber (Gy14) v1	carcgyB0849
Carg16883	Cucurbita maxima (Rimu)	carcmaB1052
Carg16883	Cucurbita maxima (Rimu)	carcmaB1049
Carg16883	Cucurbita maxima (Rimu)	carcmaB1051
Carg16883	Cucurbita moschata (Rifu)	carcmoB1021
Carg16883	Cucurbita moschata (Rifu)	carcmoB1023
Carg16883	Cucurbita moschata (Rifu)	carcmoB1025
Carg16883	Cucurbita pepo (Zucchini)	carcpeB1057
Carg16883	Cucurbita pepo (Zucchini)	carcpeB1058
Carg16883	Cucurbita pepo (Zucchini)	carcpeB1060
Carg16883	Cucurbita pepo (Zucchini)	carcpeB1062
Carg16883	Wild cucumber (PI 183967)	carcpiB0783
Carg16883	Wild cucumber (PI 183967)	carcpiB0786
Carg16883	Wild cucumber (PI 183967)	carcpiB0787
Carg16883	Cucumber (Chinese Long) v2	carcuB0766
Carg16883	Cucumber (Chinese Long) v2	carcuB0769
Carg16883	Cucumber (Chinese Long) v3	carcucB0786
Carg16883	Cucumber (Chinese Long) v3	carcucB0789
Carg16883	Cucumber (Chinese Long) v3	carcucB0790
Carg16883	Bottle gourd (USVL1VR-Ls)	carlsiB687
Carg16883	Bottle gourd (USVL1VR-Ls)	carlsiB689
Carg16883	Bottle gourd (USVL1VR-Ls)	carlsiB690
Carg16883	Melon (DHL92) v3.5.1	carmeB0744
Carg16883	Melon (DHL92) v3.5.1	carmeB0749
Carg16883	Melon (DHL92) v3.6.1	carmedB0757
Carg16883	Melon (DHL92) v3.6.1	carmedB0760
Carg16883	Melon (DHL92) v3.6.1	carmedB0763
Carg16883	Watermelon (Charleston Gray)	carwcgB0728
Carg16883	Watermelon (Charleston Gray)	carwcgB0730
Carg16883	Watermelon (97103) v1	carwmB0750
Carg16883	Watermelon (97103) v1	carwmB0752
Carg16883	Watermelon (97103) v1	carwmB0753
Carg16883	Watermelon (97103) v2	carwmbB0786
Carg16883	Watermelon (97103) v2	carwmbB0787
Carg16883	Watermelon (97103) v2	carwmbB0788
Carg16883	Wax gourd	carwgoB0886
Carg16883	Wax gourd	carwgoB0888