Carg16882 (gene) Silver-seed gourd

Overview
NameCarg16882
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionArabinose 5-phosphate isomerase
LocationCucurbita_argyrosperma_scaffold_105 : 641802 .. 642389 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCCGCCGCCGCCGCCGCCTGAAAAATCCCCAAATCCAAATCAGAGCCCTATCGACGAATCTGCGCTTCTCAATCTCTTCAAATCCCAACAAAACCACCTGAATTTCTTCTTCCACAATCTCGATCTCTCCCAAACTCTCAAATTCGCCGTGACCCTTCTCAACTCCACCGGAACCATCTTCTTCTCCGGCGTTGGTAAATCCGGCTTCGTCGCCAACAAGATCTCACAAACCCTAGTTTCTCTTGGCATTCGCTCCGCTTTTCTTTCCCCACTCGATGCGCTTCATGGAGATATCGGCATTTTGAATTCCGGCGATGTTCTTGTTCTCTTTAGCAAATCCGGTAATACCGTAGAGCTTCTTCGCCTTGTTCCTTGTGCTAGGGCTAAGGGTGCGTATCTCATTGCTGTGACCTCTGTTGAAGGTAATGTGCTTGCTGGGGTTTGTGATATGAATGTGCATTTGCCTCTTGAGCGTGAATTGTGCCCTTTTGATCTTGCCCCTGTTACCTCCACTGCGATTCAAATGGTTTTTGGAGATACTGTGGCTATTGCGCTTATGGGTGCGCGGAATTTGACTAAGGAG

mRNA sequence

ATGTCGCCGCCGCCGCCGCCGCCTGAAAAATCCCCAAATCCAAATCAGAGCCCTATCGACGAATCTGCGCTTCTCAATCTCTTCAAATCCCAACAAAACCACCTGAATTTCTTCTTCCACAATCTCGATCTCTCCCAAACTCTCAAATTCGCCGTGACCCTTCTCAACTCCACCGGAACCATCTTCTTCTCCGGCGTTGGTAAATCCGGCTTCGTCGCCAACAAGATCTCACAAACCCTAGTTTCTCTTGGCATTCGCTCCGCTTTTCTTTCCCCACTCGATGCGCTTCATGGAGATATCGGCATTTTGAATTCCGGCGATGTTCTTGTTCTCTTTAGCAAATCCGGTAATACCGTAGAGCTTCTTCGCCTTGTTCCTTGTGCTAGGGCTAAGGGTGCGTATCTCATTGCTGTGACCTCTGTTGAAGGTAATGTGCTTGCTGGGGTTTGTGATATGAATGTGCATTTGCCTCTTGAGCGTGAATTGTGCCCTTTTGATCTTGCCCCTGTTACCTCCACTGCGATTCAAATGGTTTTTGGAGATACTGTGGCTATTGCGCTTATGGGTGCGCGGAATTTGACTAAGGAG

Coding sequence (CDS)

ATGTCGCCGCCGCCGCCGCCGCCTGAAAAATCCCCAAATCCAAATCAGAGCCCTATCGACGAATCTGCGCTTCTCAATCTCTTCAAATCCCAACAAAACCACCTGAATTTCTTCTTCCACAATCTCGATCTCTCCCAAACTCTCAAATTCGCCGTGACCCTTCTCAACTCCACCGGAACCATCTTCTTCTCCGGCGTTGGTAAATCCGGCTTCGTCGCCAACAAGATCTCACAAACCCTAGTTTCTCTTGGCATTCGCTCCGCTTTTCTTTCCCCACTCGATGCGCTTCATGGAGATATCGGCATTTTGAATTCCGGCGATGTTCTTGTTCTCTTTAGCAAATCCGGTAATACCGTAGAGCTTCTTCGCCTTGTTCCTTGTGCTAGGGCTAAGGGTGCGTATCTCATTGCTGTGACCTCTGTTGAAGGTAATGTGCTTGCTGGGGTTTGTGATATGAATGTGCATTTGCCTCTTGAGCGTGAATTGTGCCCTTTTGATCTTGCCCCTGTTACCTCCACTGCGATTCAAATGGTTTTTGGAGATACTGTGGCTATTGCGCTTATGGGTGCGCGGAATTTGACTAAGGAG

Protein sequence

MSPPPPPPEKSPNPNQSPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANKISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYLIAVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE
Homology
[Close]
BLAST of Carg16882 vs. NCBI nr
Match: XP_022967433.1 (probable arabinose 5-phosphate isomerase [Cucurbita maxima])

HSP 1 Score: 347.4 bits (890), Expect = 3.1e-92
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0 

Query: 16  QSPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANK 75
           QSPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANK
Sbjct: 26  QSPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANK 85

Query: 76  ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYL 135
           ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNT ELLRLVPCARAKGAYL
Sbjct: 86  ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTEELLRLVPCARAKGAYL 145

Query: 136 IAVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK 195
           IA+TSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK
Sbjct: 146 IALTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK 205

Query: 196 E 197
           E
Sbjct: 206 E 206

[Close]
BLAST of Carg16882 vs. NCBI nr
Match: XP_022963934.1 (probable arabinose 5-phosphate isomerase [Cucurbita moschata])

HSP 1 Score: 345.1 bits (884), Expect = 1.5e-91
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 0 

Query: 16  QSPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANK 75
           QSPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANK
Sbjct: 26  QSPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANK 85

Query: 76  ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYL 135
           ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNT ELLRLVPCARAKGA L
Sbjct: 86  ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTEELLRLVPCARAKGACL 145

Query: 136 IAVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK 195
           IAVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK
Sbjct: 146 IAVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK 205

Query: 196 E 197
           E
Sbjct: 206 E 206

[Close]
BLAST of Carg16882 vs. NCBI nr
Match: XP_023554677.1 (probable arabinose 5-phosphate isomerase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343.6 bits (880), Expect = 4.5e-91
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 0 

Query: 17  SPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANKI 76
           SPIDESALLNLFKSQQNHLNFFFHNLDL QTLKFAVTLLN+TGTIFFSGVGKSGFVANKI
Sbjct: 30  SPIDESALLNLFKSQQNHLNFFFHNLDLPQTLKFAVTLLNATGTIFFSGVGKSGFVANKI 89

Query: 77  SQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYLI 136
           SQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNT ELLRLVPCARAKGAYLI
Sbjct: 90  SQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTEELLRLVPCARAKGAYLI 149

Query: 137 AVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE 196
           AVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE
Sbjct: 150 AVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE 209

[Close]
BLAST of Carg16882 vs. NCBI nr
Match: XP_022931177.1 (probable arabinose 5-phosphate isomerase [Cucurbita moschata])

HSP 1 Score: 333.6 bits (854), Expect = 4.6e-88
Identity = 172/180 (95.56%), Postives = 174/180 (96.67%), Query Frame = 0 

Query: 17  SPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANKI 76
           SPIDES LL+LFKSQQNHLNFFFHNLDLSQTLKF VTLLN+ GTIFFSGVGKSGFVA KI
Sbjct: 29  SPIDESTLLDLFKSQQNHLNFFFHNLDLSQTLKFTVTLLNAPGTIFFSGVGKSGFVARKI 88

Query: 77  SQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYLI 136
           SQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNT ELLRLVPCARAKGAYLI
Sbjct: 89  SQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTEELLRLVPCARAKGAYLI 148

Query: 137 AVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE 196
           AVTSVE NVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE
Sbjct: 149 AVTSVEANVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE 208

[Close]
BLAST of Carg16882 vs. NCBI nr
Match: XP_022995847.1 (probable arabinose 5-phosphate isomerase [Cucurbita maxima])

HSP 1 Score: 333.6 bits (854), Expect = 4.6e-88
Identity = 172/180 (95.56%), Postives = 174/180 (96.67%), Query Frame = 0 

Query: 17  SPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANKI 76
           SPIDES LL+LFKSQQNHLNFFFHNLDLSQTLKF VTLLN+ GTIFFSGVGKSGFVA KI
Sbjct: 29  SPIDESTLLDLFKSQQNHLNFFFHNLDLSQTLKFTVTLLNAPGTIFFSGVGKSGFVARKI 88

Query: 77  SQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYLI 136
           SQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNT ELLRLVPCARAKGAYLI
Sbjct: 89  SQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTEELLRLVPCARAKGAYLI 148

Query: 137 AVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE 196
           AVTSVE NVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE
Sbjct: 149 AVTSVEANVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE 208

[Close]
BLAST of Carg16882 vs. TAIR10
Match: AT3G54690.1 (Sugar isomerase (SIS) family protein)

HSP 1 Score: 269.6 bits (688), Expect = 1.5e-72
Identity = 137/178 (76.97%), Postives = 156/178 (87.64%), Query Frame = 0 

Query: 19  IDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANKISQ 78
           I    LLNLFKSQQ+ LN FF +LDLSQTL F+  LL++TGT+FF+GVGKS FVANK+SQ
Sbjct: 29  ISHDNLLNLFKSQQDLLNHFFKHLDLSQTLDFSRILLSTTGTVFFTGVGKSAFVANKVSQ 88

Query: 79  TLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYLIAV 138
           TLVSL  RS+FLSPLDALHGDIG L+  DVLV FSKSG T ELLRLVPCARAKGA+L+++
Sbjct: 89  TLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEELLRLVPCARAKGAFLVSL 148

Query: 139 TSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE 197
           TSV GN LAGVCDMNVHLPL+RELCPF+LAPVTSTAIQMVFGDT+A+ALM ARNL+KE
Sbjct: 149 TSVSGNPLAGVCDMNVHLPLQRELCPFNLAPVTSTAIQMVFGDTIAVALMAARNLSKE 206

[Close]
BLAST of Carg16882 vs. Swiss-Prot
Match: sp|Q9M1T1|SETH3_ARATH (Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana OX=3702 GN=SETH3 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.7e-71
Identity = 137/178 (76.97%), Postives = 156/178 (87.64%), Query Frame = 0 

Query: 19  IDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANKISQ 78
           I    LLNLFKSQQ+ LN FF +LDLSQTL F+  LL++TGT+FF+GVGKS FVANK+SQ
Sbjct: 29  ISHDNLLNLFKSQQDLLNHFFKHLDLSQTLDFSRILLSTTGTVFFTGVGKSAFVANKVSQ 88

Query: 79  TLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYLIAV 138
           TLVSL  RS+FLSPLDALHGDIG L+  DVLV FSKSG T ELLRLVPCARAKGA+L+++
Sbjct: 89  TLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEELLRLVPCARAKGAFLVSL 148

Query: 139 TSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE 197
           TSV GN LAGVCDMNVHLPL+RELCPF+LAPVTSTAIQMVFGDT+A+ALM ARNL+KE
Sbjct: 149 TSVSGNPLAGVCDMNVHLPLQRELCPFNLAPVTSTAIQMVFGDTIAVALMAARNLSKE 206

[Close]
BLAST of Carg16882 vs. Swiss-Prot
Match: sp|Q9Z826|Y526_CHLPN (Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 OS=Chlamydia pneumoniae OX=83558 GN=CPn_0526 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-32
Identity = 74/169 (43.79%), Postives = 110/169 (65.09%), Query Frame = 0 

Query: 26  NLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANKISQTLVSLGI 85
           ++   Q+  ++FFF      + ++ A  +L  +G +FFSGVGKSG VA K+  TL SL  
Sbjct: 13  DILGKQKEAVDFFFQAFQPKEAMQLAEKILGHSGWVFFSGVGKSGCVARKLVATLQSLSE 72

Query: 86  RSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYLIAVTSVEGNV 145
           R+ F SP+D LHGD+G+++ GD++ LFSKSG T ELL  VP  +++ A L+A+TS+  + 
Sbjct: 73  RALFFSPVDLLHGDLGLVSPGDIVCLFSKSGETQELLDTVPHLKSRRAILVAITSMPYSN 132

Query: 146 LAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLT 195
           LA + D+ V LP   EL PF+L P  ST  QM+FGD +A+ L  +R ++
Sbjct: 133 LAALSDLVVILPSVAELDPFNLIPTNSTTCQMIFGDFLAMLLFHSRGVS 181

[Close]
BLAST of Carg16882 vs. Swiss-Prot
Match: sp|Q9PJZ7|Y679_CHLMU (Uncharacterized protein TC_0679 OS=Chlamydia muridarum (strain MoPn / Nigg) OX=243161 GN=TC_0679 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.1e-27
Identity = 66/176 (37.50%), Postives = 104/176 (59.09%), Query Frame = 0 

Query: 19  IDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANKISQ 78
           + E   L++F  Q+  ++ +F N       +    LL   G +FFSG+GKSG +A K+  
Sbjct: 6   VAEDLCLDIFHKQKQVISRYFANFHCDVVRQLTERLLCHQGAVFFSGIGKSGCIARKLVA 65

Query: 79  TLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYLIAV 138
           T+ S G ++ FLS  D LHGD+G+++SGD++ LFS SG T E+L  +P  + +  +L+ +
Sbjct: 66  TMQSFGEKAFFLSG-DLLHGDLGVVSSGDIVCLFSNSGETREILEWIPHLKNRQVFLVGI 125

Query: 139 TSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLT 195
           TS   + LA   D  V LP   EL PF+L P TST  Q++F D +A+ ++  R ++
Sbjct: 126 TSSPCSSLAVFSDFVVMLPKLEELDPFNLIPTTSTTCQLLFSDLLAMTVLRCRKIS 180

[Close]
BLAST of Carg16882 vs. Swiss-Prot
Match: sp|O67500|Y1546_AQUAE (Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_1546 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 62/154 (40.26%), Postives = 95/154 (61.69%), Query Frame = 0 

Query: 44  LSQTLKFAVTLL-NSTGTIFFSGVGKSGFVANKISQTLVSLGIRSAFLSPLDALHGDIGI 103
           L +    AV +L N  G +  +G+GKSG +A KIS TL S G  S FL P +ALHGD+G+
Sbjct: 28  LDENFSKAVEILRNCEGKVILTGIGKSGHIARKISSTLSSTGTPSVFLHPAEALHGDMGL 87

Query: 104 LNSGDVLVLFSKSGNTVELLRLVPCARAKGAYLIAVTSVEGNVLAGVCDMNVHLPLEREL 163
           L+S D L+  S SG + E+L ++  A+A    +I +T  E + LA   D+ + +P++RE 
Sbjct: 88  LDSKDALIAISNSGESTEVLYVLQYAKALNIPVIGITGNEKSSLAKYSDVVLKIPVDREA 147

Query: 164 CPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE 197
           CPF+LAP  S+ + +  GD +A+ LM  +  ++E
Sbjct: 148 CPFNLAPTVSSTVTLALGDAIAMTLMKLKGFSQE 181

[Close]
BLAST of Carg16882 vs. Swiss-Prot
Match: sp|O84404|Y399_CHLTR (Uncharacterized protein CT_399 OS=Chlamydia trachomatis (strain D/UW-3/Cx) OX=272561 GN=CT_399 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-26
Identity = 64/176 (36.36%), Postives = 105/176 (59.66%), Query Frame = 0 

Query: 19  IDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANKISQ 78
           I E+  L++F  Q+  ++ +F +       +    LL   G++FFSG+GKSG +A K+  
Sbjct: 6   IAENLCLDIFHKQKQVISQYFASFHYDCVHQLTEKLLCHQGSLFFSGIGKSGCIARKLVA 65

Query: 79  TLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYLIAV 138
           T+ S G ++ FLS  D LHGD+G+++ GD++ LFS SG T E+L  +P  + +  +L+ +
Sbjct: 66  TMQSFGEKAFFLSG-DLLHGDLGVVSPGDIVCLFSNSGETREILEWIPHLKNRPVFLVGI 125

Query: 139 TSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLT 195
           T+   + LA   D  + LP   EL PF+L P TST  Q++F D +A+ L+  R ++
Sbjct: 126 TAAPCSSLAAFSDFVIVLPKLEELDPFNLMPTTSTTCQLLFSDLLAMTLLRCRKIS 180

[Close]
BLAST of Carg16882 vs. TrEMBL
Match: tr|A0A1S3BI02|A0A1S3BI02_CUCME (probable arabinose 5-phosphate isomerase OS=Cucumis melo OX=3656 GN=LOC103489865 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 5.8e-87
Identity = 170/181 (93.92%), Postives = 173/181 (95.58%), Query Frame = 0 

Query: 16  QSPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANK 75
           Q+ I+ES LLNLFKSQQNHLNFFFHNLDLSQTLKF VTLLNS GTIFFSGVGKSGFVA K
Sbjct: 28  QTSINESTLLNLFKSQQNHLNFFFHNLDLSQTLKFTVTLLNSPGTIFFSGVGKSGFVARK 87

Query: 76  ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYL 135
           ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLV+FSKSGNT ELLRLVPCARAKGA L
Sbjct: 88  ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVMFSKSGNTEELLRLVPCARAKGALL 147

Query: 136 IAVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK 195
           IAVTSVEGNVL GVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK
Sbjct: 148 IAVTSVEGNVLGGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK 207

Query: 196 E 197
           E
Sbjct: 208 E 208

[Close]
BLAST of Carg16882 vs. TrEMBL
Match: tr|A0A0A0L7X3|A0A0A0L7X3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G379750 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 4.9e-86
Identity = 168/181 (92.82%), Postives = 172/181 (95.03%), Query Frame = 0 

Query: 16  QSPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANK 75
           Q+ I+ES LLNLFKSQQNHLNFFF NLDLSQTLKF  TLLNS GTIFFSGVGKSGFVA K
Sbjct: 24  QTSINESTLLNLFKSQQNHLNFFFQNLDLSQTLKFTATLLNSPGTIFFSGVGKSGFVARK 83

Query: 76  ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYL 135
           ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLV+FSKSGNT ELLRLVPCARAKGA+L
Sbjct: 84  ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVMFSKSGNTEELLRLVPCARAKGAFL 143

Query: 136 IAVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK 195
           IAVTSVEGNVL GVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK
Sbjct: 144 IAVTSVEGNVLGGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK 203

Query: 196 E 197
           E
Sbjct: 204 E 204

[Close]
BLAST of Carg16882 vs. TrEMBL
Match: tr|A0A2P6PV66|A0A2P6PV66_ROSCH (Putative arabinose-5-phosphate isomerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0287891 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 4.3e-82
Identity = 161/181 (88.95%), Postives = 170/181 (93.92%), Query Frame = 0 

Query: 16  QSPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANK 75
           QSPIDE+ LLNLFKSQQ+HLNFFF +LDLSQTL F  TLL S+GTIFFSGVGKSGFVANK
Sbjct: 28  QSPIDETTLLNLFKSQQSHLNFFFQHLDLSQTLSFTRTLLRSSGTIFFSGVGKSGFVANK 87

Query: 76  ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYL 135
           ISQTLVSLGIRSAFLSPLDALHGDIGIL + DVLVLFSKSGNT ELLRLVPCA+AKGA+L
Sbjct: 88  ISQTLVSLGIRSAFLSPLDALHGDIGILAAADVLVLFSKSGNTDELLRLVPCAKAKGAFL 147

Query: 136 IAVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK 195
           I+VTSV+GN LA VCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK
Sbjct: 148 ISVTSVDGNALASVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK 207

Query: 196 E 197
           E
Sbjct: 208 E 208

[Close]
BLAST of Carg16882 vs. TrEMBL
Match: tr|A0A067K2N0|A0A067K2N0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17678 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.5e-79
Identity = 153/181 (84.53%), Postives = 167/181 (92.27%), Query Frame = 0 

Query: 16  QSPIDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANK 75
           Q  ID++ LL+LFKSQQNHLN+FF NLDLSQTL FA  LLNS GTIFFSGVGKSGFVANK
Sbjct: 18  QQQIDQTTLLSLFKSQQNHLNYFFQNLDLSQTLSFAQLLLNSRGTIFFSGVGKSGFVANK 77

Query: 76  ISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYL 135
           ISQTL+SLGIR+ FLSP+DALHGDIGIL S D+LVLFSKSGNT ELLRLVPCA+AKGAYL
Sbjct: 78  ISQTLISLGIRAGFLSPVDALHGDIGILTSRDILVLFSKSGNTEELLRLVPCAKAKGAYL 137

Query: 136 IAVTSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK 195
           ++VTSVEGN +A VC+MNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK
Sbjct: 138 VSVTSVEGNAIAAVCNMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTK 197

Query: 196 E 197
           +
Sbjct: 198 D 198

[Close]
BLAST of Carg16882 vs. TrEMBL
Match: tr|A0A2C9UV60|A0A2C9UV60_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G033300 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.5e-79
Identity = 154/178 (86.52%), Postives = 164/178 (92.13%), Query Frame = 0 

Query: 19  IDESALLNLFKSQQNHLNFFFHNLDLSQTLKFAVTLLNSTGTIFFSGVGKSGFVANKISQ 78
           ID + LLNLFKSQQNHLNFFF NLDLSQTL F  TLLNS GTIFFSGVGKSGFVANKISQ
Sbjct: 15  IDPNTLLNLFKSQQNHLNFFFQNLDLSQTLSFTQTLLNSRGTIFFSGVGKSGFVANKISQ 74

Query: 79  TLVSLGIRSAFLSPLDALHGDIGILNSGDVLVLFSKSGNTVELLRLVPCARAKGAYLIAV 138
           TL+SLGIR+ FLSP+DALHGDIGIL S D+LVLFSKSGNT ELLRLVPCA+AKGAYL++V
Sbjct: 75  TLISLGIRAGFLSPVDALHGDIGILTSRDILVLFSKSGNTEELLRLVPCAKAKGAYLVSV 134

Query: 139 TSVEGNVLAGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKE 197
           TSVEGN LA VCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGAR L+K+
Sbjct: 135 TSVEGNALASVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARKLSKD 192

The following BLAST results are available for this feature:
BLAST of Carg16882 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022967433.13.1e-9298.90probable arabinose 5-phosphate isomerase [Cucurbita maxima][more]
XP_022963934.11.5e-9198.90probable arabinose 5-phosphate isomerase [Cucurbita moschata][more]
XP_023554677.14.5e-9198.33probable arabinose 5-phosphate isomerase [Cucurbita pepo subsp. pepo][more]
XP_022931177.14.6e-8895.56probable arabinose 5-phosphate isomerase [Cucurbita moschata][more]
XP_022995847.14.6e-8895.56probable arabinose 5-phosphate isomerase [Cucurbita maxima][more]
BLAST of Carg16882 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G54690.11.5e-7276.97Sugar isomerase (SIS) family protein[more]
BLAST of Carg16882 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M1T1|SETH3_ARATH2.7e-7176.97Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana OX=3702 GN=SETH... [more]
sp|Q9Z826|Y526_CHLPN1.4e-3243.79Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 OS=Chlamydia pneumoniae... [more]
sp|Q9PJZ7|Y679_CHLMU4.1e-2737.50Uncharacterized protein TC_0679 OS=Chlamydia muridarum (strain MoPn / Nigg) OX=2... [more]
sp|O67500|Y1546_AQUAE1.2e-2640.26Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus (strain VF5) ... [more]
sp|O84404|Y399_CHLTR2.6e-2636.36Uncharacterized protein CT_399 OS=Chlamydia trachomatis (strain D/UW-3/Cx) OX=27... [more]
BLAST of Carg16882 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BI02|A0A1S3BI02_CUCME5.8e-8793.92probable arabinose 5-phosphate isomerase OS=Cucumis melo OX=3656 GN=LOC103489865... [more]
tr|A0A0A0L7X3|A0A0A0L7X3_CUCSA4.9e-8692.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G379750 PE=3 SV=1[more]
tr|A0A2P6PV66|A0A2P6PV66_ROSCH4.3e-8288.95Putative arabinose-5-phosphate isomerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_... [more]
tr|A0A067K2N0|A0A067K2N0_JATCU1.5e-7984.53Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17678 PE=3 SV=1[more]
tr|A0A2C9UV60|A0A2C9UV60_MANES1.5e-7986.52Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G033300 PE=3 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:1901135carbohydrate derivative metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0097367carbohydrate derivative binding
Vocabulary: INTERPRO
TermDefinition
IPR035474SIS_Kpsf
IPR001347SIS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1901135 carbohydrate derivative metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0097367 carbohydrate derivative binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16882-RACarg16882-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001347Sugar isomerase (SIS)PFAMPF01380SIScoord: 55..185
e-value: 1.4E-18
score: 66.9
IPR001347Sugar isomerase (SIS)PROSITEPS51464SIScoord: 51..193
score: 22.661
NoneNo IPR availableGENE3DG3DSA:3.40.50.10490coord: 15..196
e-value: 9.8E-48
score: 164.4
NoneNo IPR availablePANTHERPTHR11911:SF62ARABINOSE 5-PHOSPHATE ISOMERASE-RELATEDcoord: 10..196
NoneNo IPR availablePANTHERPTHR11911INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATEDcoord: 10..196
NoneNo IPR availableSUPERFAMILYSSF53697SIS domaincoord: 28..196
IPR035474KpsF-like, SIS domainCDDcd05014SIS_Kpsfcoord: 59..186
e-value: 2.67719E-57
score: 178.12

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16882Cla005971Watermelon (97103) v1carwmB0750
Carg16882Csa3G379750Cucumber (Chinese Long) v2carcuB0769
Carg16882MELO3C012874Melon (DHL92) v3.5.1carmeB0744
Carg16882ClCG07G001120Watermelon (Charleston Gray)carwcgB0730
Carg16882CSPI03G22440Wild cucumber (PI 183967)carcpiB0786
Carg16882CmaCh19G000950Cucurbita maxima (Rimu)carcmaB1049
Carg16882CmaCh02G017410Cucurbita maxima (Rimu)carcmaB1051
Carg16882CmoCh19G001070Cucurbita moschata (Rifu)carcmoB1021
Carg16882CmoCh02G017840Cucurbita moschata (Rifu)carcmoB1023
Carg16882Lsi05G010260Bottle gourd (USVL1VR-Ls)carlsiB689
Carg16882Cp4.1LG05g01140Cucurbita pepo (Zucchini)carcpeB1062
Carg16882Cp4.1LG15g00800Cucurbita pepo (Zucchini)carcpeB1057
Carg16882CsGy3G021510Cucumber (Gy14) v2carcgybB0747
Carg16882MELO3C012874.2Melon (DHL92) v3.6.1carmedB0757
Carg16882CsaV3_3G022160Cucumber (Chinese Long) v3carcucB0789
Carg16882Cla97C07G129400Watermelon (97103) v2carwmbB0788
Carg16882Bhi05G000144Wax gourdcarwgoB0888
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg16882Carg08961Silver-seed gourdcarcarB599
The following block(s) are covering this gene:
GeneOrganismBlock
Carg16882Silver-seed gourdcarcarB262
Carg16882Silver-seed gourdcarcarB272
Carg16882Silver-seed gourdcarcarB600
Carg16882Silver-seed gourdcarcarB601
Carg16882Cucumber (Gy14) v2carcgybB0745
Carg16882Cucumber (Gy14) v1carcgyB0847
Carg16882Cucumber (Gy14) v1carcgyB0849
Carg16882Cucurbita maxima (Rimu)carcmaB1052
Carg16882Cucurbita moschata (Rifu)carcmoB1025
Carg16882Cucurbita pepo (Zucchini)carcpeB1058
Carg16882Cucurbita pepo (Zucchini)carcpeB1060
Carg16882Wild cucumber (PI 183967)carcpiB0783
Carg16882Wild cucumber (PI 183967)carcpiB0787
Carg16882Cucumber (Chinese Long) v2carcuB0766
Carg16882Cucumber (Chinese Long) v3carcucB0786
Carg16882Cucumber (Chinese Long) v3carcucB0790
Carg16882Bottle gourd (USVL1VR-Ls)carlsiB687
Carg16882Bottle gourd (USVL1VR-Ls)carlsiB690
Carg16882Melon (DHL92) v3.5.1carmeB0749
Carg16882Melon (DHL92) v3.6.1carmedB0760
Carg16882Melon (DHL92) v3.6.1carmedB0763
Carg16882Watermelon (Charleston Gray)carwcgB0728
Carg16882Watermelon (97103) v1carwmB0752
Carg16882Watermelon (97103) v1carwmB0753
Carg16882Watermelon (97103) v2carwmbB0786
Carg16882Watermelon (97103) v2carwmbB0787
Carg16882Wax gourdcarwgoB0886